Rh6CG244600

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004376
Physical Location & Seq
Forward (+)
41192247 .. 41202087
9841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG244600.1

Sequence Viewer

Length: 1518 bp
ATGGAGGGAGATACAGTGCGCCGTGAACATCAGGAGGAAGAAGAAGCAGAATATGTATTGCTTGATCTTGATTCTGTTTACTGCCAGCTTCAGATTCCACCAAACGCACCATATGTACTTTCAGGTTTGGATACAATGCAACCGGTATTGATTCTAGATGGCAAATTTAAGTTGATCGGTCAGTGGGATGAGACAATTGGGACATGTCTTATATTCAAAGAGGAAGTTGTCCCTGTTGTTCACGAAGAAACAGGACCATCAGAAGCAAACCTTTTTGCTGGAAAATGCATTGTTGATCAAAAGCAATCTTCAAGCAAGCAAGTAAAACCAGTTGGCCGCACTCATAGGATTCTAAAATTCAGATTGGCACCAAATTTTAACTCTCCTAATACTGCATCTGCACAGACTGAGCAATTTCCAAAACAAAAACCAAAAAATCAAAGATCCCACCTTTCCTTCTTGGTAAAAGTGCTGTTTGAGCGGTGCGGTGGCAAGTGGAAGAGGATTTTGAGGTTCTTGCAATCCGTGGAGCAATCGTCTGACATGGTGGAGACTTCAGCAGGCAATATGCATATTACCACTGGAAGTTTTCCATCTCCAGCACATGTGGTCCAAGTCTCAGCCTCCCACAACCATGCTGCTTTTGTTATGCAATCTGGAGAGGTTTTCACATGTGGGGACAATTCGTCATTTTGTTGTGGGCATAAAGATACAAACCGGCCAATATTTAGGCCTAGGCTCGTAGAGGCAATGAAGGGAATTCCTTGCAAGCAGGTTGTTGCAGGGCTTAATTTTACAGCTTTCCTTACAAGACAAGGCCATGTTTATACATGTGGGGCCAATACACATGGACAACTCGGTCATGGAGACACCACAGATGGCCCAACTCCCAAAATTATTGAATTTCTCAAGCAAATTGGCTCCATAATTCAGATTGCTGCTGGACCAAGTTACGTCTTAGCTGTAACTGACAACGGAGTAGTCTACTCTTTTGGGTCAGGTTCTAATTTATGTCTCGGCCATGGAGAGCAGCATGATGAGTTCCAACCACGTGCAATCCAATCATTTAGAAGGAAGGGTATTCATGTAGTTCGAGTCTCTGTATATACCTGGGGTAAAGGGTACTGTGGTGCATTAGGCCATGGGGATGAGATTGACAAGACTACCCCGGAACTCTTGAGCAGAGTTCACAGCCAGCTGGCCGTGCAGGTGTGTGCAAGAAATCGGAAGACCTTTGTTCTAATGGATAATGGTTTAGTATATGGTTGTGGTTGGATGGGGTTTGGTAGCCTTGGGTTTACAGACAGGGGACTATCTGGCAAAATCTTGAGCCCTCGCATCCTTGATAGCTTAAGACCTCATCATGTTTCTCAGATTAGCACTGGGCTGTACCATACTGTTGCTATCACTAACTCTGGACAACTCTTTGGATTCGGAGATAATGAAAGAGCACAACTTGGGCACGATACACTGAGAGCAACTGAAACTTTGGCCTCAAACCAACTGAAATTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

505

Amino Acids

55.54

Weight (kDa)

8.17

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIIC_sub6 PF10419 12 - 122 1e-15 TFIIIC subunit triple barrel domain
WD40_RLD PF25390 192 - 366 5.8e-38 RCC1-like domain
RCC1_2 PF13540 203 - 230 5.2e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 219 - 269 1.4e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 257 - 285 1.3e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 272 - 322 1.7e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 325 - 367 1.3e-07 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 367 - 489 2.8e-23 RCC1-like domain
RCC1_2 PF13540 456 - 485 7.4e-08 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1198
AasI GACNNNNNNGTC 1 cut(s) 858
Acc36I ACCTGC 2 cut(s) 763, 1198
AccB1I GGYRCC 1 cut(s) 367
AccBSI CCGCTC 1 cut(s) 481
AccI GTMKAC 1 cut(s) 984
AciI CCGC 3 cut(s) 337, 481, 486
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 4 cut(s) 334, 719, 1018, 1200
AcsI RAATTY 6 cut(s) 164, 356, 373, 759, 902, 1508
AcuI CTGAAG 2 cut(s) 74, 540
AcvI CACGTG 1 cut(s) 1052
AfaI GTAC 3 cut(s) 117, 1124, 1391
AflII CTTAAG 1 cut(s) 1351
AflIII ACRYGT 4 cut(s) 203, 604, 671, 830
AgeI ACCGGT 1 cut(s) 142
AgsI TTSAA 3 cut(s) 217, 312, 902
AhdI GACNNNNNGTC 1 cut(s) 685
AjnI CCWGG 1 cut(s) 1109
AluBI AGCT 5 cut(s) 88, 800, 962, 1198, 1350
AluI AGCT 5 cut(s) 88, 800, 962, 1198, 1350
Alw21I GWGCWC 1 cut(s) 1453
Alw26I GTCTC 6 cut(s) 185, 545, 622, 861, 1019, 1102
AlwI GGATC 1 cut(s) 438
ApeKI GCWGC 3 cut(s) 638, 938, 1030
ApoI RAATTY 6 cut(s) 164, 356, 373, 759, 902, 1508
AsiGI ACCGGT 1 cut(s) 142
AspA2I CCTAGG 1 cut(s) 734
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 5 cut(s) 254, 610, 837, 881, 944
AsuC2I CCSGG 1 cut(s) 1169
AvaII GGWCC 3 cut(s) 254, 610, 944
AvrII CCTAGG 1 cut(s) 734
BaeGI GKGCMC 1 cut(s) 1464
BaeI ACNNNNGTAYC 2 cut(s) 1114, 1147
BanI GGYRCC 1 cut(s) 367
BanII GRGCYC 1 cut(s) 1334
BbrPI CACGTG 1 cut(s) 1052
BbsI GAAGAC 1 cut(s) 1235
Bbv12I GWGCWC 1 cut(s) 1453
BbvI GCAGC 3 cut(s) 625, 925, 1042
BccI CCATC 5 cut(s) 152, 265, 601, 872, 1270
BceAI ACGGC 2 cut(s) 6, 1187
BciT130I CCWGG 1 cut(s) 1111
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 1 cut(s) 1169
BcoDI GTCTC 6 cut(s) 185, 545, 622, 861, 1019, 1102
BfaI CTAG 2 cut(s) 155, 735
BfrI CTTAAG 1 cut(s) 1351
BfuAI ACCTGC 2 cut(s) 763, 1198
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 4 cut(s) 337, 639, 939, 1031
BlnI CCTAGG 1 cut(s) 734
BlsI GCNGC 4 cut(s) 338, 640, 940, 1032
Bme1390I CCNGG 2 cut(s) 1111, 1169
Bme18I GGWCC 3 cut(s) 254, 610, 944
BmeRI GACNNNNNGTC 1 cut(s) 685
BmgT120I GGNCC 5 cut(s) 254, 610, 837, 881, 944
BmiI GGNNCC 3 cut(s) 369, 838, 922
BmrFI CCNGG 2 cut(s) 1111, 1169
BmrI ACTGGG 1 cut(s) 1392
BmsI GCATC 2 cut(s) 404, 1347
BmuI ACTGGG 1 cut(s) 1392
BpiI GAAGAC 1 cut(s) 1235
BpmI CTGGAG 2 cut(s) 582, 678
BpuEI CTTGAG 3 cut(s) 893, 1198, 1348
BpuMI CCSGG 1 cut(s) 1169
BsaAI YACGTR 1 cut(s) 1052
BsaJI CCNNGG 7 cut(s) 525, 734, 1021, 1110, 1141, 1167, 1291
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 3 cut(s) 30, 521, 551
Bse118I RCCGGY 2 cut(s) 142, 717
Bse1I ACTGG 3 cut(s) 329, 586, 1387
Bse3DI GCAATG 1 cut(s) 756
BseBI CCWGG 1 cut(s) 1111
BseDI CCNNGG 7 cut(s) 525, 734, 1021, 1110, 1141, 1167, 1291
BseGI GGATG 4 cut(s) 193, 1153, 1281, 1338
BseMI GCAATG 1 cut(s) 756
BseMII CTCAG 4 cut(s) 399, 633, 1385, 1463
BseNI ACTGG 3 cut(s) 329, 586, 1387
BseSI GKGCMC 1 cut(s) 1464
BseXI GCAGC 3 cut(s) 625, 925, 1042
BsgI GTGCAG 2 cut(s) 384, 1226
BshNI GGYRCC 1 cut(s) 367
BshTI ACCGGT 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 1453
BsiSI CCGG 3 cut(s) 143, 718, 1169
BslFI GGGAC 4 cut(s) 214, 215, 692, 1323
BsmAI GTCTC 6 cut(s) 185, 545, 622, 861, 1019, 1102
BsmFI GGGAC 4 cut(s) 214, 215, 692, 1323
Bsp1286I GDGCHC 3 cut(s) 1334, 1453, 1464
Bsp143I GATC 4 cut(s) 64, 174, 295, 443
Bsp19I CCATGG 2 cut(s) 1021, 1141
BspACI CCGC 3 cut(s) 337, 481, 486
BspCNI CTCAG 4 cut(s) 400, 632, 1384, 1464
BspLI GGNNCC 3 cut(s) 369, 838, 922
BspMI ACCTGC 2 cut(s) 763, 1198
BspPI GGATC 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 367
BspTI CTTAAG 1 cut(s) 1351
BsrBI CCGCTC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 756
BsrFI RCCGGY 2 cut(s) 142, 717
BsrI ACTGG 3 cut(s) 329, 586, 1387
BssAI RCCGGY 2 cut(s) 142, 717
BssECI CCNNGG 7 cut(s) 525, 734, 1021, 1110, 1141, 1167, 1291
BssMI GATC 4 cut(s) 64, 174, 295, 443
BssT1I CCWWGG 4 cut(s) 734, 1021, 1141, 1291
Bst2UI CCWGG 1 cut(s) 1111
Bst4CI ACNGT 3 cut(s) 16, 1127, 1399
Bst6I CTCTTC 1 cut(s) 494
BstAFI CTTAAG 1 cut(s) 1351
BstBAI YACGTR 1 cut(s) 1052
BstC8I GCNNGC 6 cut(s) 86, 317, 562, 770, 1196, 1200
BstDEI CTNAG 5 cut(s) 408, 619, 958, 1371, 1472
BstDSI CCRYGG 3 cut(s) 525, 1021, 1141
BstF5I GGATG 4 cut(s) 193, 1153, 1281, 1338
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 4 cut(s) 67, 177, 298, 446
BstMAI GTCTC 6 cut(s) 185, 545, 622, 861, 1019, 1102
BstMBI GATC 4 cut(s) 64, 174, 295, 443
BstMWI GCNNNNNNNGC 2 cut(s) 478, 1204
BstNI CCWGG 1 cut(s) 1111
BstNSI RCATGY 4 cut(s) 207, 608, 675, 834
BstSCI CCNGG 2 cut(s) 1109, 1167
BstSLI GKGCMC 1 cut(s) 1464
BstV1I GCAGC 3 cut(s) 625, 925, 1042
BstV2I GAAGAC 1 cut(s) 1235
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BsuI GTATCC 1 cut(s) 124
BtgI CCRYGG 3 cut(s) 525, 1021, 1141
BtsCI GGATG 4 cut(s) 193, 1153, 1281, 1338
BtsIMutI CAGTG 5 cut(s) 21, 188, 579, 1380, 1469
BveI ACCTGC 2 cut(s) 763, 1198
Cac8I GCNNGC 6 cut(s) 86, 317, 562, 770, 1196, 1200
CfoI GCGC 1 cut(s) 21
Cfr10I RCCGGY 2 cut(s) 142, 717
Cfr13I GGNCC 5 cut(s) 254, 610, 837, 881, 944
Csp6I GTAC 3 cut(s) 116, 1123, 1390
CspAI ACCGGT 1 cut(s) 142
CviQI GTAC 3 cut(s) 116, 1123, 1390
DdeI CTNAG 5 cut(s) 408, 619, 958, 1371, 1472
DpnI GATC 4 cut(s) 66, 176, 297, 445
DpnII GATC 4 cut(s) 64, 174, 295, 443
DrdI GACNNNNNNGTC 1 cut(s) 858
DriI GACNNNNNGTC 1 cut(s) 685
DseDI GACNNNNNNGTC 1 cut(s) 858
EaeI YGGCCR 4 cut(s) 334, 719, 1018, 1200
Eam1104I CTCTTC 1 cut(s) 494
Eam1105I GACNNNNNGTC 1 cut(s) 685
EarI CTCTTC 1 cut(s) 494
Eco130I CCWWGG 4 cut(s) 734, 1021, 1141, 1291
Eco147I AGGCCT 1 cut(s) 733
Eco24I GRGCYC 1 cut(s) 1334
Eco47I GGWCC 3 cut(s) 254, 610, 944
Eco57I CTGAAG 2 cut(s) 74, 540
Eco72I CACGTG 1 cut(s) 1052
EcoRI GAATTC 1 cut(s) 759
EcoRII CCWGG 1 cut(s) 1109
EcoT14I CCWWGG 4 cut(s) 734, 1021, 1141, 1291
EcoT22I ATGCAT 2 cut(s) 290, 573
EcoT38I GRGCYC 1 cut(s) 1334
ErhI CCWWGG 4 cut(s) 734, 1021, 1141, 1291
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FaqI GGGAC 4 cut(s) 214, 215, 692, 1323
FauNDI CATATG 1 cut(s) 112
FbaI TGATCA 1 cut(s) 295
FblI GTMKAC 1 cut(s) 984
Fnu4HI GCNGC 4 cut(s) 337, 639, 939, 1031
FokI GGATG 4 cut(s) 200, 1160, 1288, 1325
FriOI GRGCYC 1 cut(s) 1334
Fsp4HI GCNGC 4 cut(s) 337, 639, 939, 1031
FspBI CTAG 2 cut(s) 155, 735
GlaI GCGC 1 cut(s) 20
GluI GCNGC 4 cut(s) 337, 639, 939, 1031
GsuI CTGGAG 2 cut(s) 582, 678
HapII CCGG 3 cut(s) 143, 718, 1169
HhaI GCGC 1 cut(s) 21
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 6 cut(s) 71, 94, 151, 349, 1095, 1431
HpaII CCGG 3 cut(s) 143, 718, 1169
Hpy166II GTNNAC 6 cut(s) 26, 79, 241, 985, 1189, 1299
Hpy188I TCNGA 8 cut(s) 93, 262, 362, 541, 933, 1227, 1374, 1436
Hpy188III TCNNGA 8 cut(s) 32, 68, 155, 242, 657, 1177, 1327, 1416
Hpy8I GTNNAC 6 cut(s) 26, 79, 241, 985, 1189, 1299
HpyAV CCTTC 4 cut(s) 466, 748, 1065, 1069
HpyCH4III ACNGT 3 cut(s) 16, 1127, 1399
HpyCH4IV ACGT 2 cut(s) 954, 1051
HpyF10VI GCNNNNNNNGC 2 cut(s) 478, 1204
HpyF3I CTNAG 5 cut(s) 408, 619, 958, 1371, 1472
HpySE526I ACGT 2 cut(s) 954, 1051
HspAI GCGC 1 cut(s) 19
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 4 cut(s) 64, 174, 295, 443
LmnI GCTCC 2 cut(s) 529, 926
Lsp1109I GCAGC 3 cut(s) 625, 925, 1042
LweI GCATC 2 cut(s) 404, 1347
MaeI CTAG 2 cut(s) 155, 735
MaeII ACGT 2 cut(s) 954, 1051
MaeIII GTNAC 2 cut(s) 950, 964
MalI GATC 4 cut(s) 66, 176, 297, 445
MbiI CCGCTC 1 cut(s) 481
MboI GATC 4 cut(s) 64, 174, 295, 443
MboII GAAGA 6 cut(s) 50, 53, 257, 300, 511, 1240
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 3 cut(s) 1334, 1453, 1464
MlyI GAGTC 1 cut(s) 1104
MmeI TCCRAC 2 cut(s) 1069, 1253
Mph1103I ATGCAT 2 cut(s) 290, 573
MseI TTAA 4 cut(s) 168, 378, 789, 1352
MslI CAYNNNNRTG 2 cut(s) 633, 1146
MspA1I CMGCKG 1 cut(s) 1198
MspCI CTTAAG 1 cut(s) 1351
MspI CCGG 3 cut(s) 143, 718, 1169
MspR9I CCNGG 2 cut(s) 1111, 1169
MunI CAATTG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 1111
MwoI GCNNNNNNNGC 2 cut(s) 478, 1204
NciI CCSGG 1 cut(s) 1169
NcoI CCATGG 2 cut(s) 1021, 1141
NdeI CATATG 1 cut(s) 112
NdeII GATC 4 cut(s) 64, 174, 295, 443
NlaIV GGNNCC 3 cut(s) 369, 838, 922
NmeAIII GCCGAG 1 cut(s) 996
NsiI ATGCAT 2 cut(s) 290, 573
NspI RCATGY 4 cut(s) 207, 608, 675, 834
PaqCI CACCTGC 1 cut(s) 1198
PceI AGGCCT 1 cut(s) 733
PciI ACATGT 4 cut(s) 203, 604, 671, 830
PfeI GAWTC 5 cut(s) 71, 94, 151, 349, 1431
PinAI ACCGGT 1 cut(s) 142
PkrI GCNGC 4 cut(s) 338, 640, 940, 1032
PleI GAGTC 1 cut(s) 1103
PmaCI CACGTG 1 cut(s) 1052
PmlI CACGTG 1 cut(s) 1052
PpsI GAGTC 1 cut(s) 1103
Ppu21I YACGTR 1 cut(s) 1052
PscI ACATGT 4 cut(s) 203, 604, 671, 830
Psp6I CCWGG 1 cut(s) 1109
PspCI CACGTG 1 cut(s) 1052
PspGI CCWGG 1 cut(s) 1109
PspN4I GGNNCC 3 cut(s) 369, 838, 922
PspPI GGNCC 5 cut(s) 254, 610, 837, 881, 944
PsuI RGATCY 1 cut(s) 443
PvuII CAGCTG 1 cut(s) 1198
RsaI GTAC 3 cut(s) 117, 1124, 1391
RsaNI GTAC 3 cut(s) 116, 1123, 1390
RseI CAYNNNNRTG 2 cut(s) 633, 1146
SaqAI TTAA 4 cut(s) 168, 378, 789, 1352
SatI GCNGC 4 cut(s) 337, 639, 939, 1031
Sau3AI GATC 4 cut(s) 64, 174, 295, 443
Sau96I GGNCC 5 cut(s) 254, 610, 837, 881, 944
SchI GAGTC 1 cut(s) 1104
ScrFI CCNGG 2 cut(s) 1111, 1169
SduI GDGCHC 3 cut(s) 1334, 1453, 1464
SfaNI GCATC 2 cut(s) 404, 1347
SinI GGWCC 3 cut(s) 254, 610, 944
SmiMI CAYNNNNRTG 2 cut(s) 633, 1146
SmlI CTYRAG 4 cut(s) 908, 1177, 1327, 1351
SmoI CTYRAG 4 cut(s) 908, 1177, 1327, 1351
SseBI AGGCCT 1 cut(s) 733
SsiI CCGC 3 cut(s) 337, 481, 486
SspI AATATT 1 cut(s) 726
SspMI CTAG 2 cut(s) 155, 735
StuI AGGCCT 1 cut(s) 733
StyD4I CCNGG 2 cut(s) 1109, 1167
StyI CCWWGG 4 cut(s) 734, 1021, 1141, 1291
TaaI ACNGT 3 cut(s) 16, 1127, 1399
TaiI ACGT 2 cut(s) 957, 1054
TaqI TCGA 1 cut(s) 1093
TaqII GACCGA 2 cut(s) 167, 848
TatI WGTACW 1 cut(s) 115
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 5 cut(s) 71, 94, 151, 349, 1431
Tru1I TTAA 4 cut(s) 168, 378, 789, 1352
Tru9I TTAA 4 cut(s) 168, 378, 789, 1352
TscAI CASTG 5 cut(s) 21, 188, 586, 1387, 1476
TseI GCWGC 3 cut(s) 638, 938, 1030
TspDTI ATGAA 3 cut(s) 767, 1073, 1458
TspGWI ACGGA 2 cut(s) 514, 990
TspRI CASTG 5 cut(s) 21, 188, 586, 1387, 1476
Vha464I CTTAAG 1 cut(s) 1351
VpaK11BI GGWCC 3 cut(s) 254, 610, 944
XapI RAATTY 6 cut(s) 164, 356, 373, 759, 902, 1508
XbaI TCTAGA 1 cut(s) 154
XceI RCATGY 4 cut(s) 207, 608, 675, 834
XmaJI CCTAGG 1 cut(s) 734
XmiI GTMKAC 1 cut(s) 984
XspI CTAG 2 cut(s) 155, 735
Zsp2I ATGCAT 2 cut(s) 290, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.