Rh2CG419600

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004376
Physical Location & Seq
Forward (+)
57349298 .. 57350125
828 bp
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UTR
Exon/CDS
Intron
Rh2CG419600.1

Sequence Viewer

Length: 237 bp
ATGCTCCATTCCTCTCTGCTTTTTTTTTTTTTTTGCTTGTTTTTCTGGTTTGAGGCTATGGAGGTTGATACTGATCGCAGTGAACATCAGTATGAAGAAGAATATGTATTGCTTGATCTTGGTTCAGTTTCCTCCCAGCTTCAGATACCAGCAAACGCACCATATGTTCTTTCTGGTTTAGACACAATGCATCCGGTACTGATTATAAATGACAAATTGAAGTTGGTGAGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_sub6

Protein Analysis

78

Amino Acids

9.04

Weight (kDa)

4.36

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIIC_sub6 PF10419 32 - 73 3.2e-07 TFIIIC subunit triple barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 1 cut(s) 198
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
BmsI GCATC 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 72
BseGI GGATG 1 cut(s) 190
BseJI GATNNNNATC 1 cut(s) 72
BseYI CCCAGC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 194
Bsp143I GATC 2 cut(s) 73, 115
BssMI GATC 2 cut(s) 73, 115
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 2 cut(s) 76, 118
BstMBI GATC 2 cut(s) 73, 115
BtsCI GGATG 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 85
Csp6I GTAC 1 cut(s) 197
CviJI RGCY 2 cut(s) 56, 139
CviKI_1 RGCY 2 cut(s) 56, 139
CviQI GTAC 1 cut(s) 197
DpnI GATC 2 cut(s) 75, 117
DpnII GATC 2 cut(s) 73, 115
Eco57I CTGAAG 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 192
FaiI YATR 7 cut(s) 59, 93, 105, 163, 165, 206, 235
FauNDI CATATG 1 cut(s) 163
FokI GGATG 1 cut(s) 177
GsaI CCCAGC 1 cut(s) 139
HapII CCGG 1 cut(s) 194
HpaII CCGG 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 73, 115
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 31, 149, 159, 162, 207
LweI GCATC 1 cut(s) 199
MalI GATC 2 cut(s) 75, 117
MboI GATC 2 cut(s) 73, 115
MboII GAAGA 2 cut(s) 107, 110
MluCI AATT 1 cut(s) 215
MnlI CCTC 4 cut(s) 22, 46, 55, 142
Mph1103I ATGCAT 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 1 cut(s) 194
NdeI CATATG 1 cut(s) 163
NdeII GATC 2 cut(s) 73, 115
NsiI ATGCAT 1 cut(s) 192
PsiI TTATAA 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 135
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 90
Sau3AI GATC 2 cut(s) 73, 115
SetI ASST 2 cut(s) 66, 141
SfaNI GCATC 1 cut(s) 199
SgeI CNNG 8 cut(s) 49, 58, 125, 131, 148, 161, 186, 206
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 1 cut(s) 215
TasI AATT 1 cut(s) 215
TscAI CASTG 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 1 cut(s) 85
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.