Rh2AG433900

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004376
Physical Location & Seq
Forward (+)
64375520 .. 64376347
828 bp
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UTR
Exon/CDS
Intron
Rh2AG433900.1

Sequence Viewer

Length: 282 bp
ATGCTCCATTCCTCTCTGCTTTTTTTTTTTTTTTGGTCTTTGAATCATCTGTGTTTCAACTTTGCTAAGGACTGGAGCAGCTTGTTTTTCTGGTTTGAGGCTATGGAGGTTGATACTGATCGCAGTGAACATCAGTATGAAGAAGAATATGTATTGCTTGATCTTGGTTCAGTTTCCTCCCAGCTTCAGATACCAGCAAACGCACCATATGTTCTTTCTGGTTTAGACACAATGCATCCGGTACTGATTATAAATGACAAATTGAAGTTGGTGAGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_sub6

Protein Analysis

93

Amino Acids

10.88

Weight (kDa)

4.56

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIIC_sub6 PF10419 47 - 88 5.1e-07 TFIIIC subunit triple barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 1 cut(s) 243
AgsI TTSAA 3 cut(s) 43, 58, 265
AluBI AGCT 2 cut(s) 81, 184
AluI AGCT 2 cut(s) 81, 184
ApeKI GCWGC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 90
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
BmsI GCATC 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 77
Bse8I GATNNNNATC 1 cut(s) 117
BseGI GGATG 1 cut(s) 235
BseJI GATNNNNATC 1 cut(s) 117
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 90
BseYI CCCAGC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 239
Bsp143I GATC 2 cut(s) 118, 160
BsrI ACTGG 1 cut(s) 77
BssMI GATC 2 cut(s) 118, 160
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 2 cut(s) 121, 163
BstMBI GATC 2 cut(s) 118, 160
BstV1I GCAGC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
Csp6I GTAC 1 cut(s) 242
CviJI RGCY 3 cut(s) 81, 101, 184
CviKI_1 RGCY 3 cut(s) 81, 101, 184
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 66
DpnI GATC 2 cut(s) 120, 162
DpnII GATC 2 cut(s) 118, 160
Eco57I CTGAAG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 237
FaiI YATR 7 cut(s) 104, 138, 150, 208, 210, 251, 280
FauNDI CATATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 79
GsaI CCCAGC 1 cut(s) 184
GsuI CTGGAG 1 cut(s) 94
HapII CCGG 1 cut(s) 239
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 66
Kzo9I GATC 2 cut(s) 118, 160
LmnI GCTCC 2 cut(s) 9, 75
LpnPI CCDG 6 cut(s) 58, 76, 194, 204, 207, 252
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 244
MalI GATC 2 cut(s) 120, 162
MboI GATC 2 cut(s) 118, 160
MboII GAAGA 2 cut(s) 152, 155
MluCI AATT 1 cut(s) 260
MnlI CCTC 4 cut(s) 22, 91, 100, 187
Mph1103I ATGCAT 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 1 cut(s) 239
NdeI CATATG 1 cut(s) 208
NdeII GATC 2 cut(s) 118, 160
NsiI ATGCAT 1 cut(s) 237
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 80
PsiI TTATAA 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 180
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 135
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 2 cut(s) 118, 160
SetI ASST 3 cut(s) 83, 111, 186
SfaNI GCATC 1 cut(s) 244
SgeI CNNG 9 cut(s) 85, 94, 103, 170, 176, 193, 206, 231, 251
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 1 cut(s) 260
TasI AATT 1 cut(s) 260
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 1 cut(s) 130
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 1 cut(s) 130
Zsp2I ATGCAT 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.