Rh2BG441900

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004376
Physical Location & Seq
Forward (+)
62597347 .. 62601793
4447 bp
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UTR
Exon/CDS
Intron
Rh2BG441900.1

Sequence Viewer

Length: 339 bp
ATGAAGATGAACCTGCGCGGTGGTTTCAACTTTGCTAAGGACTGGAGCAGCTTGTTTTTCTGGTTTGAGGCTATGGAGGTTGATACTGATCGCAGTGAACATCAGTATGAAGAAGAATATGTATTGCCTGATCTTGGTGCAGTTTCCTCCCAGCTTCAGATACCAGCAAACGCACCGTATGTTCTTTCTGGTTTAGACACAATGCATCCGGTACTGATTATAAATGACAAATTGAAGTTGAATGGAAAATGGGACGAAGCTATTGGAACCTGCCTTATTTTCAAAGAAGGTGCTAGTTCTGTAATTCATGAAGAAACAGGATTGTCGGCAAATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_sub6

Protein Analysis

112

Amino Acids

12.54

Weight (kDa)

4.56

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIIC_sub6 PF10419 37 - 99 2e-14 TFIIIC subunit triple barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
Acc36I ACCTGC 2 cut(s) 21, 278
AccII CGCG 1 cut(s) 18
AciI CCGC 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 4 cut(s) 28, 235, 241, 283
AluBI AGCT 3 cut(s) 51, 154, 260
AluI AGCT 3 cut(s) 51, 154, 260
ApeKI GCWGC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 60
BfaI CTAG 1 cut(s) 294
BfuAI ACCTGC 2 cut(s) 21, 278
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 268
BmsI GCATC 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 87
BseGI GGATG 1 cut(s) 205
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 60
BseYI CCCAGC 1 cut(s) 150
BsgI GTGCAG 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 266
Bsp143I GATC 2 cut(s) 88, 130
BspACI CCGC 1 cut(s) 18
BspFNI CGCG 1 cut(s) 18
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 268
BspMI ACCTGC 2 cut(s) 21, 278
BsrI ACTGG 1 cut(s) 47
BssMI GATC 2 cut(s) 88, 130
Bst4CI ACNGT 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 2 cut(s) 91, 133
BstMBI GATC 2 cut(s) 88, 130
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 100
BveI ACCTGC 2 cut(s) 21, 278
CciI TCATGA 1 cut(s) 307
CfoI GCGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 212
CviAII CATG 1 cut(s) 308
CviJI RGCY 4 cut(s) 51, 71, 154, 260
CviKI_1 RGCY 4 cut(s) 51, 71, 154, 260
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 1 cut(s) 36
DpnI GATC 2 cut(s) 90, 132
DpnII GATC 2 cut(s) 88, 130
Eco57I CTGAAG 1 cut(s) 140
EcoT22I ATGCAT 2 cut(s) 207, 337
FaeI CATG 1 cut(s) 311
FaiI YATR 7 cut(s) 74, 108, 120, 180, 221, 309, 337
FaqI GGGAC 1 cut(s) 266
FatI CATG 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 1 cut(s) 294
GlaI GCGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 49
GsaI CCCAGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 64
HapII CCGG 1 cut(s) 209
HhaI GCGC 1 cut(s) 18
Hin1II CATG 1 cut(s) 311
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HpaII CCGG 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4V TGCA 3 cut(s) 140, 205, 335
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 1 cut(s) 311
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 2 cut(s) 88, 130
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 294
MalI GATC 2 cut(s) 90, 132
MboI GATC 2 cut(s) 88, 130
MboII GAAGA 4 cut(s) 16, 122, 125, 323
MluCI AATT 2 cut(s) 230, 303
MnlI CCTC 3 cut(s) 61, 70, 157
Mph1103I ATGCAT 2 cut(s) 207, 337
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 18
NdeII GATC 2 cut(s) 88, 130
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 1 cut(s) 268
NsiI ATGCAT 2 cut(s) 207, 337
PagI TCATGA 1 cut(s) 307
PkrI GCNGC 1 cut(s) 50
PsiI TTATAA 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 268
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 105
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 2 cut(s) 88, 130
SetI ASST 7 cut(s) 15, 53, 81, 156, 262, 272, 292
SfaNI GCATC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 2 cut(s) 230, 303
SsiI CCGC 1 cut(s) 18
SspMI CTAG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 177
TasI AATT 2 cut(s) 230, 303
TscAI CASTG 1 cut(s) 100
TseI GCWGC 1 cut(s) 48
TspDTI ATGAA 5 cut(s) 17, 23, 123, 296, 324
TspRI CASTG 1 cut(s) 100
XspI CTAG 1 cut(s) 294
Zsp2I ATGCAT 2 cut(s) 207, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.