Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000062.1

Orthogroup ID

OG0004376

Physical Location & Seq

Genomic Coordinates Reverse (-)

3553 .. 5224

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000062.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atggagggagatactgtgcccagtgaacatcaggaacaagaagaagaagaagaagaagaatatgtattgcttgatcttgattctgtttactcccagcttcagattccaccaaaggcaccatatgttctttcaggtttggatacaatgcaaccggtattgattctagatggcaaatttaagttgatcggtcagtgggatgagacaattgggacatgtcttttattcaaagaggaagttgtccctgttgttcatgaagaaacaggaccatcagaagcaaacctttttgctggcaaatgcattgttgatcaaaagcaatcttcaagcaagcaagtaaaaccagttggccgtactcataggattctaaaattcagattggcaccagattttgactctcctaatactgcatctgcacagactgagcaagtaaatttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TFIIIC_sub6

Protein Analysis

144

Amino Acids

16.11

Weight (kDa)

4.46

Isoelectric Point (pI)

60.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80745 AT3G15420
malus_domestica	MD03G1224300.v1.1 MD11G1243100.v1.1
prunus_persica	Prupe.4G185100_v2.0.a1
pyrus_communis	pycom03g17270
rosa_chinensis	RchiOBHm_Chr2g0143371 RchiOBHm_Chr5g0034441 RchiOBHm_Chr6g0279991
rosa_laevigata	RLG00000013100 RLG00000033549
rosa_multiflora	Rmu_sc0000062.1_g000002 Rmu_sc0002504.1_g000016
rosa_roxburghii	Rroxscaffold_1G00045860 Rroxscaffold_7G00188510
rosa_rugosa	Rorug05G0145900 Rorug06G0129200.1
rosa_samantha	Rh2AG433900 Rh2BG441900 Rh2CG419600 Rh2DG452000 Rh5AG237900 Rh5BG238300 Rh5CG268700 Rh5DG246300 Rh6AG238900 Rh6BG242700 Rh6CG244600 Rh6DG235300
rosa_wichuraiana	Rw5G021730 Rw6G020730 Rw6G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	115, 376
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	3 cut(s)	173, 365, 427
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	349
AflIII	ACRYGT	1 cut(s)	212
AgeI	ACCGGT	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	226, 321
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	343
ApoI	RAATTY	3 cut(s)	173, 365, 427
AsiGI	ACCGGT	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	21
BanI	GGYRCC	2 cut(s)	115, 376
BccI	CCATC	2 cut(s)	161, 274
BceAI	ACGGC	1 cut(s)	330
BciVI	GTATCC	1 cut(s)	133
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	117, 378
BmrI	ACTGGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	413
BmuI	ACTGGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	21, 338
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	2 cut(s)	21, 338
BseSI	GKGCMC	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	345
BshNI	GGYRCC	2 cut(s)	115, 376
BshTI	ACCGGT	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	2 cut(s)	223, 224
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	2 cut(s)	223, 224
BsnI	GGCC	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	73, 183, 304
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	1 cut(s)	409
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	117, 378
BspT107I	GGYRCC	2 cut(s)	115, 376
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	21, 338
BssAI	RCCGGY	1 cut(s)	151
BssMI	GATC	3 cut(s)	73, 183, 304
Bst4CI	ACNGT	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	289, 326
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	3 cut(s)	76, 186, 307
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	3 cut(s)	73, 183, 304
BstNSI	RCATGY	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	21
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	28, 197
Cac8I	GCNNGC	2 cut(s)	289, 326
CciI	TCATGA	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	348
CspAI	ACCGGT	1 cut(s)	151
CviAII	CATG	2 cut(s)	213, 251
CviJI	RGCY	2 cut(s)	97, 345
CviKI_1	RGCY	2 cut(s)	97, 345
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	3 cut(s)	75, 185, 306
DpnII	GATC	3 cut(s)	73, 183, 304
EaeI	YGGCCR	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	83
EcoT22I	ATGCAT	1 cut(s)	299
FaeI	CATG	2 cut(s)	216, 254
FaiI	YATR	6 cut(s)	63, 121, 123, 214, 252, 354
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	2 cut(s)	223, 224
FatI	CATG	2 cut(s)	212, 250
FauNDI	CATATG	1 cut(s)	121
FbaI	TGATCA	1 cut(s)	304
FokI	GGATG	1 cut(s)	209
FspBI	CTAG	1 cut(s)	164
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	1 cut(s)	152
Hin1II	CATG	2 cut(s)	216, 254
HinfI	GANTC	5 cut(s)	80, 103, 160, 358, 389
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	26, 88
Hpy188I	TCNGA	3 cut(s)	102, 271, 371
Hpy188III	TCNNGA	4 cut(s)	32, 77, 164, 251
Hpy8I	GTNNAC	2 cut(s)	26, 88
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	4 cut(s)	148, 297, 404, 410
HpyF3I	CTNAG	1 cut(s)	417
Hsp92II	CATG	2 cut(s)	216, 254
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	73, 183, 304
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	1 cut(s)	164
MalI	GATC	3 cut(s)	75, 185, 306
MboI	GATC	3 cut(s)	73, 183, 304
MboII	GAAGA	8 cut(s)	53, 56, 59, 62, 65, 68, 266, 309
MfeI	CAATTG	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	4 cut(s)	173, 204, 365, 427
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	1 cut(s)	223
Mph1103I	ATGCAT	1 cut(s)	299
MseI	TTAA	1 cut(s)	177
MspI	CCGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	204
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	3 cut(s)	73, 183, 304
NlaIII	CATG	2 cut(s)	216, 254
NlaIV	GGNNCC	2 cut(s)	117, 378
NsiI	ATGCAT	1 cut(s)	299
NspI	RCATGY	1 cut(s)	216
PagI	TCATGA	1 cut(s)	250
PciI	ACATGT	1 cut(s)	212
PfeI	GAWTC	4 cut(s)	80, 103, 160, 358
PinAI	ACCGGT	1 cut(s)	151
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PscI	ACATGT	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	117, 378
PspPI	GGNCC	1 cut(s)	263
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	177
Sau3AI	GATC	3 cut(s)	73, 183, 304
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	3 cut(s)	99, 136, 282
SfaNI	GCATC	1 cut(s)	413
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	4 cut(s)	173, 204, 365, 427
SspMI	CTAG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	16
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	4 cut(s)	173, 204, 365, 427
TfiI	GAWTC	4 cut(s)	80, 103, 160, 358
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	2 cut(s)	28, 197
TspDTI	ATGAA	2 cut(s)	239, 267
TspRI	CASTG	2 cut(s)	28, 197
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	3 cut(s)	173, 365, 427
XbaI	TCTAGA	1 cut(s)	163
XceI	RCATGY	1 cut(s)	216
XspI	CTAG	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.