Rh5CG268700

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004376
Physical Location & Seq
Forward (+)
28859499 .. 28865610
6112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG268700.1

Sequence Viewer

Length: 501 bp
ATGAATTTGGATAAGGAAATTAGGGATTATTGGAATGTCAATATGTCACCATTTGCATCCAACATGTATACACAAGCTATGGAGGGAGATACTGTGCCCAGTGAACATCAGGAACAAGAAGAAGAATATGTATTGCTTGATCTTGATTCTGTTTACTCCCAGCTTCAGATTCCACCAAAGGCACCATATGTTCTTTCAGGTTTGGATACAATGCAACCGGTATTGATTCTAGATGGCAAATTTAAGTTGATCGGTCAGTGGGATGAGACAATTGGGACATGTCTTTTATTCAAAGAGGAAGTTGTCCCTGTTGTTCACGAAGAAACAGGACCATCAGAAGCAAACCTTTTTGCCGGCAAATGCATTGTTGATCAAAAGCAATCTTCAAGCAAGCAAGTAAAACCAGTTGGCCGTACTCATAGGATTCTAAAATTCAGATTGGCACCAGATTTTGACTCTCCTAATACTGCATCTGCACAGACTGAGCAAGTAAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_sub6

Protein Analysis

166

Amino Acids

18.72

Weight (kDa)

4.61

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIIC_sub6 PF10419 38 - 147 1.1e-16 TFIIIC subunit triple barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 181, 442
AccI GTMKAC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 4 cut(s) 4, 239, 431, 493
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 1 cut(s) 415
AflIII ACRYGT 2 cut(s) 63, 278
AgeI ACCGGT 1 cut(s) 217
AgsI TTSAA 2 cut(s) 292, 387
AluBI AGCT 2 cut(s) 77, 163
AluI AGCT 2 cut(s) 77, 163
Alw26I GTCTC 1 cut(s) 260
AoxI GGCC 1 cut(s) 409
ApoI RAATTY 4 cut(s) 4, 239, 431, 493
AsiGI ACCGGT 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 39
AvaII GGWCC 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 99
BanI GGYRCC 2 cut(s) 181, 442
BccI CCATC 2 cut(s) 227, 340
BceAI ACGGC 1 cut(s) 396
BciVI GTATCC 1 cut(s) 199
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 1 cut(s) 230
BfuI GTATCC 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 2 cut(s) 183, 444
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 2 cut(s) 65, 479
BmuI ACTGGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bse118I RCCGGY 2 cut(s) 217, 353
Bse1I ACTGG 2 cut(s) 99, 404
BseGI GGATG 2 cut(s) 56, 268
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 2 cut(s) 99, 404
BseSI GKGCMC 1 cut(s) 99
BseYI CCCAGC 1 cut(s) 159
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 1 cut(s) 411
BshNI GGYRCC 2 cut(s) 181, 442
BshTI ACCGGT 1 cut(s) 217
BsiSI CCGG 2 cut(s) 218, 354
BslFI GGGAC 2 cut(s) 289, 290
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 289, 290
BsnI GGCC 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 139, 249, 370
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 1 cut(s) 475
BspLI GGNNCC 2 cut(s) 183, 444
BspT107I GGYRCC 2 cut(s) 181, 442
BsrFI RCCGGY 2 cut(s) 217, 353
BsrI ACTGG 2 cut(s) 99, 404
BssAI RCCGGY 2 cut(s) 217, 353
BssMI GATC 3 cut(s) 139, 249, 370
BssNAI GTATAC 1 cut(s) 69
Bst1107I GTATAC 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 355, 392
BstDEI CTNAG 1 cut(s) 483
BstF5I GGATG 2 cut(s) 56, 268
BstKTI GATC 3 cut(s) 142, 252, 373
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 3 cut(s) 139, 249, 370
BstNSI RCATGY 2 cut(s) 67, 282
BstSLI GKGCMC 1 cut(s) 99
BstZ17I GTATAC 1 cut(s) 69
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 411
BtsCI GGATG 2 cut(s) 56, 268
BtsIMutI CAGTG 2 cut(s) 106, 263
Cac8I GCNNGC 2 cut(s) 355, 392
Cfr10I RCCGGY 2 cut(s) 217, 353
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 414
CspAI ACCGGT 1 cut(s) 217
CviAII CATG 2 cut(s) 64, 279
CviJI RGCY 3 cut(s) 77, 163, 411
CviKI_1 RGCY 3 cut(s) 77, 163, 411
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 1 cut(s) 483
DpnI GATC 3 cut(s) 141, 251, 372
DpnII GATC 3 cut(s) 139, 249, 370
EaeI YGGCCR 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 365
FaeI CATG 2 cut(s) 67, 282
FaiI YATR 9 cut(s) 44, 65, 69, 80, 129, 187, 189, 280, 420
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 2 cut(s) 289, 290
FatI CATG 2 cut(s) 63, 278
FauNDI CATATG 1 cut(s) 187
FbaI TGATCA 1 cut(s) 370
FblI GTMKAC 1 cut(s) 68
FokI GGATG 2 cut(s) 43, 275
FspBI CTAG 1 cut(s) 230
GsaI CCCAGC 1 cut(s) 163
HaeIII GGCC 1 cut(s) 411
HapII CCGG 2 cut(s) 218, 354
Hin1II CATG 2 cut(s) 67, 282
HinfI GANTC 5 cut(s) 146, 169, 226, 424, 455
HpaII CCGG 2 cut(s) 218, 354
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 4 cut(s) 69, 104, 154, 316
Hpy188I TCNGA 3 cut(s) 168, 337, 437
Hpy188III TCNNGA 4 cut(s) 110, 143, 230, 317
Hpy8I GTNNAC 4 cut(s) 69, 104, 154, 316
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 5 cut(s) 56, 214, 363, 470, 476
HpyF3I CTNAG 1 cut(s) 483
Hsp92II CATG 2 cut(s) 67, 282
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 3 cut(s) 139, 249, 370
LweI GCATC 2 cut(s) 65, 479
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 45
MalI GATC 3 cut(s) 141, 251, 372
MboI GATC 3 cut(s) 139, 249, 370
MboII GAAGA 4 cut(s) 131, 134, 332, 375
MfeI CAATTG 1 cut(s) 270
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 6 cut(s) 4, 18, 239, 270, 431, 493
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 2 cut(s) 76, 289
Mph1103I ATGCAT 1 cut(s) 365
MroNI GCCGGC 1 cut(s) 353
MseI TTAA 1 cut(s) 243
MspI CCGG 2 cut(s) 218, 354
MunI CAATTG 1 cut(s) 270
NaeI GCCGGC 1 cut(s) 355
NdeI CATATG 1 cut(s) 187
NdeII GATC 3 cut(s) 139, 249, 370
NgoMIV GCCGGC 1 cut(s) 353
NlaIII CATG 2 cut(s) 67, 282
NlaIV GGNNCC 2 cut(s) 183, 444
NmuCI GTSAC 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 365
NspI RCATGY 2 cut(s) 67, 282
PciI ACATGT 2 cut(s) 63, 278
PdiI GCCGGC 1 cut(s) 355
PfeI GAWTC 4 cut(s) 146, 169, 226, 424
PinAI ACCGGT 1 cut(s) 217
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
PscI ACATGT 2 cut(s) 63, 278
PspFI CCCAGC 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 183, 444
PspPI GGNCC 1 cut(s) 329
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 243
Sau3AI GATC 3 cut(s) 139, 249, 370
Sau96I GGNCC 1 cut(s) 329
SchI GAGTC 1 cut(s) 449
SduI GDGCHC 1 cut(s) 99
SetI ASST 4 cut(s) 79, 165, 202, 348
SfaNI GCATC 2 cut(s) 65, 479
SinI GGWCC 1 cut(s) 329
Sse9I AATT 6 cut(s) 4, 18, 239, 270, 431, 493
SspMI CTAG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 94
TaqII GACCGA 1 cut(s) 242
TasI AATT 6 cut(s) 4, 18, 239, 270, 431, 493
TfiI GAWTC 4 cut(s) 146, 169, 226, 424
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 2 cut(s) 106, 263
TseFI GTSAC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 106, 263
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 4 cut(s) 4, 239, 431, 493
XbaI TCTAGA 1 cut(s) 229
XceI RCATGY 2 cut(s) 67, 282
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.