AT3G15420

TFIIIC subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004376
Physical Location & Seq
Reverse (-)
5207575 .. 5208509
935 bp
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UTR
Exon/CDS
Intron
AT3G15420.1

Sequence Viewer

Length: 324 bp
ATGGAGGAGGAATTTGTTATGATTGATCTTGATGAAGTTTCAAGGCACATTGAGATTCCATCAGATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATTGATGGCAAAATCAAGCTGGTTGGAGAATATATTGAAACGATTGGTACATGCCTTGCTTTCTCTGAAAAGGAAGAAGTTTCAGCAAGTGAAAACCAGATGCCACATAAGAAGATAATTGAACCTGTTGCAAAACTCCACAAGATTCTTAAGTTTAGATTAGCAGCATTAGACAATGATGATGGAGAAACAAAAACAAACAATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_sub6

Protein Analysis

107

Amino Acids

11.97

Weight (kDa)

4.61

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIIC_sub6 PF10419 2 - 94 2e-17 TFIIIC subunit triple barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 11
AfaI GTAC 1 cut(s) 163
AflII CTTAAG 1 cut(s) 263
AgsI TTSAA 4 cut(s) 42, 100, 152, 236
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 11
BbvI GCAGC 1 cut(s) 290
BccI CCATC 3 cut(s) 67, 113, 290
BciVI GTATCC 1 cut(s) 85
BfrI CTTAAG 1 cut(s) 263
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmsI GCATC 2 cut(s) 55, 204
BsaWI WCCGGW 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 290
BsiSI CCGG 1 cut(s) 104
Bsp143I GATC 1 cut(s) 25
BspTI CTTAAG 1 cut(s) 263
BssMI GATC 1 cut(s) 25
BstAFI CTTAAG 1 cut(s) 263
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 290
BsuI GTATCC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 162
CviAII CATG 1 cut(s) 165
CviJI RGCY 1 cut(s) 133
CviKI_1 RGCY 1 cut(s) 133
CviQI GTAC 1 cut(s) 162
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
FaeI CATG 1 cut(s) 168
FaiI YATR 5 cut(s) 20, 75, 147, 166, 222
FatI CATG 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 279
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 168
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 3 cut(s) 55, 100, 259
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 2 cut(s) 64, 181
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 245
Hsp92II CATG 1 cut(s) 168
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 5 cut(s) 69, 117, 119, 224, 252
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 2 cut(s) 55, 204
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 200, 238
MluCI AATT 3 cut(s) 11, 231, 316
MmeI TCCRAC 1 cut(s) 118
MseI TTAA 1 cut(s) 264
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 1 cut(s) 104
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 168
NspI RCATGY 1 cut(s) 168
PfeI GAWTC 3 cut(s) 55, 100, 259
PkrI GCNGC 1 cut(s) 280
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 1 cut(s) 25
SetI ASST 3 cut(s) 88, 135, 241
SfaNI GCATC 2 cut(s) 55, 204
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 3 cut(s) 11, 231, 316
TasI AATT 3 cut(s) 11, 231, 316
TfiI GAWTC 3 cut(s) 55, 100, 259
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 48
Vha464I CTTAAG 1 cut(s) 263
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.