RLG00000033549

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004376
Physical Location & Seq
Forward (+)
28822880 .. 28827334
4455 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033549

Sequence Viewer

Length: 525 bp
ATGGAGGGAGATACAGTGCGCAGTGAACTTCAGGAGGAAGAAGAAGAAGAATATGTATTGCTTGATCTTGATTCTGTTTACCCCCAGCTTCAGATTCCACCAAACGCACCATATGTACTTTCAATCGGTCAGTGGGATGAGACAATTGGGACATGTCTTTTATTCAAAGAGGAAGTTGTCCCTGTTGTTCATGAAGAAACAGGACCATCAGAAGCAAACCTTTTTGCTGGCAAATGCATTGTTGATCAAAAGCAATCTTCAAGCAAGCAAGTAAAACCAGTTGGCCGCACTCATAGGATTCTAAAATTTAGATTGGCACCAGATTTTGACTCTCCTAATACTGCATCTGCACAGACTGAGCAACTATATGGAAGTGGTTGTCTTTGCAATTTTCAATTCTATTGCGTCTTCTTGTTGGAACACATCCATCCCAATATTGCCAAATTGGTTTCCAAAACAAAAAACCAAAAATCAAAGATCCCACCTTTCCTTCTTGGTAAAGGGTTGTCATTGATAATCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_sub6

Protein Analysis

175

Amino Acids

19.49

Weight (kDa)

5.11

Isoelectric Point (pI)

57.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIIC_sub6 PF10419 9 - 105 4.9e-08 TFIIIC subunit triple barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 316
AciI CCGC 1 cut(s) 286
AclWI GGATC 1 cut(s) 472
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 2 cut(s) 14, 74
AfaI GTAC 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 4 cut(s) 123, 166, 261, 395
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 472
AoxI GGCC 1 cut(s) 283
ApoI RAATTY 1 cut(s) 305
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 203
AvaII GGWCC 1 cut(s) 203
BanI GGYRCC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 400
BccI CCATC 2 cut(s) 214, 435
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 134
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 318
BmsI GCATC 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 400
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 278
BseGI GGATG 3 cut(s) 142, 423, 427
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 278
BseYI CCCAGC 1 cut(s) 84
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 316
BslFI GGGAC 2 cut(s) 163, 164
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 2 cut(s) 163, 164
BsnI GGCC 1 cut(s) 285
Bsp143I GATC 3 cut(s) 64, 244, 477
BspACI CCGC 1 cut(s) 286
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 349
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 1 cut(s) 472
BspT107I GGYRCC 1 cut(s) 316
BsrI ACTGG 1 cut(s) 278
BssMI GATC 3 cut(s) 64, 244, 477
Bst4CI ACNGT 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 229, 266
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 142, 423, 427
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 3 cut(s) 67, 247, 480
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 64, 244, 477
BstNSI RCATGY 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 400
BstX2I RGATCY 1 cut(s) 477
BstYI RGATCY 1 cut(s) 477
BsuRI GGCC 1 cut(s) 285
BtsCI GGATG 3 cut(s) 142, 423, 427
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 3 cut(s) 21, 28, 137
Cac8I GCNNGC 2 cut(s) 229, 266
CciI TCATGA 1 cut(s) 190
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 116
CviAII CATG 2 cut(s) 153, 191
CviJI RGCY 2 cut(s) 88, 285
CviKI_1 RGCY 2 cut(s) 88, 285
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 1 cut(s) 357
DpnI GATC 3 cut(s) 66, 246, 479
DpnII GATC 3 cut(s) 64, 244, 477
EaeI YGGCCR 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 2 cut(s) 14, 74
EcoT22I ATGCAT 1 cut(s) 239
FaeI CATG 2 cut(s) 156, 194
FaiI YATR 8 cut(s) 54, 112, 114, 154, 192, 294, 367, 369
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FaqI GGGAC 2 cut(s) 163, 164
FatI CATG 2 cut(s) 152, 190
FauNDI CATATG 1 cut(s) 112
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 3 cut(s) 149, 410, 414
Fsp4HI GCNGC 1 cut(s) 286
FspI TGCGCA 1 cut(s) 20
GlaI GCGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 286
GsaI CCCAGC 1 cut(s) 88
HaeIII GGCC 1 cut(s) 285
HgaI GACGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 21
Hin1II CATG 2 cut(s) 156, 194
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 4 cut(s) 71, 94, 298, 329
Hpy166II GTNNAC 2 cut(s) 26, 79
Hpy188I TCNGA 2 cut(s) 93, 211
Hpy188III TCNNGA 3 cut(s) 32, 68, 191
Hpy8I GTNNAC 2 cut(s) 26, 79
HpyAV CCTTC 1 cut(s) 500
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 4 cut(s) 237, 344, 350, 387
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 2 cut(s) 156, 194
HspAI GCGC 1 cut(s) 19
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 3 cut(s) 64, 244, 477
LpnPI CCDG 7 cut(s) 17, 98, 186, 195, 213, 291, 333
LweI GCATC 1 cut(s) 353
MalI GATC 3 cut(s) 66, 246, 479
MboI GATC 3 cut(s) 64, 244, 477
MboII GAAGA 7 cut(s) 50, 53, 56, 59, 206, 249, 400
MfeI CAATTG 1 cut(s) 144
MflI RGATCY 1 cut(s) 477
MluCI AATT 5 cut(s) 144, 305, 388, 395, 443
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 2 cut(s) 28, 163
Mph1103I ATGCAT 1 cut(s) 239
MunI CAATTG 1 cut(s) 144
NdeI CATATG 1 cut(s) 112
NdeII GATC 3 cut(s) 64, 244, 477
NlaIII CATG 2 cut(s) 156, 194
NlaIV GGNNCC 1 cut(s) 318
NsbI TGCGCA 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 239
NspI RCATGY 1 cut(s) 156
PagI TCATGA 1 cut(s) 190
PciI ACATGT 1 cut(s) 152
PfeI GAWTC 3 cut(s) 71, 94, 298
PkrI GCNGC 1 cut(s) 287
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
PscI ACATGT 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 1 cut(s) 203
PsuI RGATCY 1 cut(s) 477
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 3 cut(s) 64, 244, 477
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 323
SetI ASST 3 cut(s) 90, 222, 487
SfaNI GCATC 1 cut(s) 353
SinI GGWCC 1 cut(s) 203
Sse9I AATT 5 cut(s) 144, 305, 388, 395, 443
SsiI CCGC 1 cut(s) 286
SspI AATATT 1 cut(s) 436
TaaI ACNGT 1 cut(s) 16
TaqII GACCGA 1 cut(s) 116
TasI AATT 5 cut(s) 144, 305, 388, 395, 443
TatI WGTACW 1 cut(s) 115
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 3 cut(s) 71, 94, 298
TscAI CASTG 3 cut(s) 21, 28, 137
TspDTI ATGAA 2 cut(s) 179, 207
TspRI CASTG 3 cut(s) 21, 28, 137
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 156
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.