Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004376

Physical Location & Seq

Genomic Coordinates Reverse (-)

18457014 .. 18459947

Gene Structure 2934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAGTCAAAAGAAGAAGAAGAATATGTATTGCTCGATCTCGATTCCGTTTCCTCGCAGTTTGAAATTCCACCAAACGCACCCTATTCTTTTTCCGGTCTAAACACGGAGCATCCAGTATTGACTATAGGCGACAAACTCAAGTTGATAGGAGAATATCAAGAAACGATTGGAACATGCCTTATATTCAAAGAAGAAGATGCTAGCCCTGCGGTTCATGAAGAAATGGGACCATCAGAAGCAAACCTTTTTGCAGGCAAATGCATAATGGATCCAGATCAATCTCCAAGCAAGCAAGTAAAACCAGTTACGAGCCTTCAAAGGATTTTAAAATTTAGACTGGCACCCAATCTCGATTCTCATGATCCACCTGAACAGTCTCGGGATCCGGTGCTACATACAGTGCAATCAGTGGCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TFIIIC_sub6

Protein Analysis

141

Amino Acids

15.54

Weight (kDa)

4.53

Isoelectric Point (pI)

64.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80745 AT3G15420
malus_domestica	MD03G1224300.v1.1 MD11G1243100.v1.1
prunus_persica	Prupe.4G185100_v2.0.a1
pyrus_communis	pycom03g17270
rosa_chinensis	RchiOBHm_Chr2g0143371 RchiOBHm_Chr5g0034441 RchiOBHm_Chr6g0279991
rosa_laevigata	RLG00000013100 RLG00000033549
rosa_multiflora	Rmu_sc0000062.1_g000002 Rmu_sc0002504.1_g000016
rosa_roxburghii	Rroxscaffold_1G00045860 Rroxscaffold_7G00188510
rosa_rugosa	Rorug05G0145900 Rorug06G0129200.1
rosa_samantha	Rh2AG433900 Rh2BG441900 Rh2CG419600 Rh2DG452000 Rh5AG237900 Rh5BG238300 Rh5CG268700 Rh5DG246300 Rh6AG238900 Rh6BG242700 Rh6CG244600 Rh6DG235300
rosa_wichuraiana	Rw5G021730 Rw6G020730 Rw6G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	343
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	5 cut(s)	266, 279, 359, 380, 393
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	2 cut(s)	66, 332
AgsI	TTSAA	3 cut(s)	65, 190, 320
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	5 cut(s)	266, 279, 359, 380, 393
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	1 cut(s)	414
ApoI	RAATTY	2 cut(s)	66, 332
AspS9I	GGNCC	1 cut(s)	230
AsuNHI	GCTAGC	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	230
BamHI	GGATCC	2 cut(s)	271, 385
BanI	GGYRCC	1 cut(s)	343
BccI	CCATC	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	4 cut(s)	231, 273, 345, 387
BmsI	GCATC	2 cut(s)	121, 190
BmtI	GCTAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	276
BsaWI	WCCGGW	2 cut(s)	95, 388
Bse1I	ACTGG	3 cut(s)	116, 305, 345
Bse8I	GATNNNNATC	1 cut(s)	276
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	276
BseNI	ACTGG	3 cut(s)	116, 305, 345
BshFI	GGCC	1 cut(s)	416
BshNI	GGYRCC	1 cut(s)	343
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	96, 389
BslFI	GGGAC	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	381
Bsp143I	GATC	5 cut(s)	37, 271, 277, 364, 385
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	416
BspHI	TCATGA	2 cut(s)	217, 361
BspLI	GGNNCC	4 cut(s)	231, 273, 345, 387
BspOI	GCTAGC	1 cut(s)	207
BspPI	GGATC	5 cut(s)	266, 279, 359, 380, 393
BspT107I	GGYRCC	1 cut(s)	343
BsrI	ACTGG	3 cut(s)	116, 305, 345
BssMI	GATC	5 cut(s)	37, 271, 277, 364, 385
Bst4CI	ACNGT	2 cut(s)	378, 403
BstC8I	GCNNGC	3 cut(s)	205, 256, 293
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	5 cut(s)	40, 274, 280, 367, 388
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	5 cut(s)	37, 271, 277, 364, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	126
BstX2I	RGATCY	2 cut(s)	271, 385
BstYI	RGATCY	2 cut(s)	271, 385
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	408, 417
Cac8I	GCNNGC	3 cut(s)	205, 256, 293
CciI	TCATGA	2 cut(s)	217, 361
Cfr13I	GGNCC	1 cut(s)	230
CviAII	CATG	3 cut(s)	177, 218, 362
CviJI	RGCY	3 cut(s)	207, 315, 416
CviKI_1	RGCY	3 cut(s)	207, 315, 416
DpnI	GATC	5 cut(s)	39, 273, 279, 366, 387
DpnII	GATC	5 cut(s)	37, 271, 277, 364, 385
DraI	TTTAAA	1 cut(s)	330
EaeI	YGGCCR	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	266
FaeI	CATG	3 cut(s)	180, 221, 365
FaiI	YATR	8 cut(s)	27, 128, 178, 185, 219, 266, 363, 399
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	3 cut(s)	176, 217, 361
FokI	GGATG	1 cut(s)	99
FspBI	CTAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	2 cut(s)	96, 389
Hin1II	CATG	3 cut(s)	180, 221, 365
HinfI	GANTC	3 cut(s)	5, 44, 356
HpaII	CCGG	2 cut(s)	96, 389
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	7 cut(s)	41, 161, 218, 275, 353, 362, 383
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	2 cut(s)	378, 403
HpyCH4V	TGCA	3 cut(s)	254, 264, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
Hsp92II	CATG	3 cut(s)	180, 221, 365
Kzo9I	GATC	5 cut(s)	37, 271, 277, 364, 385
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	9 cut(s)	109, 129, 222, 240, 288, 318, 326, 384, 402
LweI	GCATC	2 cut(s)	121, 190
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	5 cut(s)	39, 273, 279, 366, 387
MboI	GATC	5 cut(s)	37, 271, 277, 364, 385
MboII	GAAGA	6 cut(s)	26, 29, 32, 206, 209, 233
MflI	RGATCY	2 cut(s)	271, 385
MluCI	AATT	2 cut(s)	66, 332
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	1 cut(s)	64
Mph1103I	ATGCAT	1 cut(s)	266
MseI	TTAA	1 cut(s)	329
MspI	CCGG	2 cut(s)	96, 389
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	5 cut(s)	37, 271, 277, 364, 385
NheI	GCTAGC	1 cut(s)	203
NlaIII	CATG	3 cut(s)	180, 221, 365
NlaIV	GGNNCC	4 cut(s)	231, 273, 345, 387
NsiI	ATGCAT	1 cut(s)	266
NspI	RCATGY	1 cut(s)	180
PagI	TCATGA	2 cut(s)	217, 361
PfeI	GAWTC	2 cut(s)	44, 356
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	4 cut(s)	231, 273, 345, 387
PspPI	GGNCC	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	271, 385
SaqAI	TTAA	1 cut(s)	329
Sau3AI	GATC	5 cut(s)	37, 271, 277, 364, 385
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	1 cut(s)	14
SetI	ASST	2 cut(s)	249, 373
SfaNI	GCATC	2 cut(s)	121, 190
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	66, 332
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	378, 403
TaqI	TCGA	3 cut(s)	36, 42, 354
TasI	AATT	2 cut(s)	66, 332
TfiI	GAWTC	2 cut(s)	44, 356
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	2 cut(s)	408, 417
TspDTI	ATGAA	2 cut(s)	206, 234
TspGWI	ACGGA	2 cut(s)	37, 122
TspRI	CASTG	2 cut(s)	408, 417
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	2 cut(s)	66, 332
XceI	RCATGY	1 cut(s)	180
XspI	CTAG	1 cut(s)	204
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.