Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002504.1

Orthogroup ID

OG0004376

Physical Location & Seq

Genomic Coordinates Reverse (-)

55213 .. 56864

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002504.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggagggagatacagtgcgcagtgaacatcaggaggaagaagaagaagaatatgtattgcttgatgttgattctgtttactcccagcttcagattccaccaaacgcaccatatgtactttcaggtttggatacaatgcaaccggtattgattctagatggcaaatttaagttgatcggtcagtgggatgagacaattgggacatgtcttctattcaaagaggaagttgtccctgttgttcacgaagaaacaggaccatcagaagcaaacctttttgctggcaaatgcattgttgatcaaaagcaatcttcaagcaagcaagtaaaatcagttggccgcactcataggattctaaaattcagattggcaccaaattttgactctcctaatactgcatctgcacagagtgagcaagtaaatttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TFIIIC_sub6

Protein Analysis

141

Amino Acids

15.73

Weight (kDa)

4.59

Isoelectric Point (pI)

57.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80745 AT3G15420
malus_domestica	MD03G1224300.v1.1 MD11G1243100.v1.1
prunus_persica	Prupe.4G185100_v2.0.a1
pyrus_communis	pycom03g17270
rosa_chinensis	RchiOBHm_Chr2g0143371 RchiOBHm_Chr5g0034441 RchiOBHm_Chr6g0279991
rosa_laevigata	RLG00000013100 RLG00000033549
rosa_multiflora	Rmu_sc0000062.1_g000002 Rmu_sc0002504.1_g000016
rosa_roxburghii	Rroxscaffold_1G00045860 Rroxscaffold_7G00188510
rosa_rugosa	Rorug05G0145900 Rorug06G0129200.1
rosa_samantha	Rh2AG433900 Rh2BG441900 Rh2CG419600 Rh2DG452000 Rh5AG237900 Rh5BG238300 Rh5CG268700 Rh5DG246300 Rh6AG238900 Rh6BG242700 Rh6CG244600 Rh6DG235300
rosa_wichuraiana	Rw5G021730 Rw6G020730 Rw6G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	367
AciI	CCGC	1 cut(s)	337
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	4 cut(s)	164, 356, 373, 418
AcuI	CTGAAG	1 cut(s)	74
AdeI	CACNNNGTG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	203
AgeI	ACCGGT	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	217, 312
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	334
ApoI	RAATTY	4 cut(s)	164, 356, 373, 418
AsiGI	ACCGGT	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	200
BccI	CCATC	2 cut(s)	152, 265
BciVI	GTATCC	1 cut(s)	124
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	369
BmsI	GCATC	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	142
BseGI	GGATG	1 cut(s)	193
BseYI	CCCAGC	1 cut(s)	84
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	336
BshNI	GGYRCC	1 cut(s)	367
BshTI	ACCGGT	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	2 cut(s)	214, 215
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	2 cut(s)	214, 215
BsnI	GGCC	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	174, 295
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssMI	GATC	2 cut(s)	174, 295
Bst4CI	ACNGT	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	280, 317
BstF5I	GGATG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	2 cut(s)	177, 298
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	174, 295
BstNSI	RCATGY	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	200
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	3 cut(s)	21, 28, 188
Cac8I	GCNNGC	2 cut(s)	280, 317
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	116
CspAI	ACCGGT	1 cut(s)	142
CviAII	CATG	1 cut(s)	204
CviJI	RGCY	2 cut(s)	88, 336
CviKI_1	RGCY	2 cut(s)	88, 336
CviQI	GTAC	1 cut(s)	116
DpnI	GATC	2 cut(s)	176, 297
DpnII	GATC	2 cut(s)	174, 295
DraIII	CACNNNGTG	1 cut(s)	407
EaeI	YGGCCR	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	74
EcoT22I	ATGCAT	1 cut(s)	290
FaeI	CATG	1 cut(s)	207
FaiI	YATR	5 cut(s)	54, 112, 114, 205, 345
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	2 cut(s)	214, 215
FatI	CATG	1 cut(s)	203
FauNDI	CATATG	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	337
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	337
FspBI	CTAG	1 cut(s)	155
FspI	TGCGCA	1 cut(s)	20
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	337
GsaI	CCCAGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	1 cut(s)	143
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	207
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	5 cut(s)	71, 94, 151, 349, 380
HpaII	CCGG	1 cut(s)	143
Hpy166II	GTNNAC	3 cut(s)	26, 79, 241
Hpy188I	TCNGA	3 cut(s)	93, 262, 362
Hpy188III	TCNNGA	3 cut(s)	32, 155, 242
Hpy8I	GTNNAC	3 cut(s)	26, 79, 241
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	4 cut(s)	139, 288, 395, 401
Hsp92II	CATG	1 cut(s)	207
HspAI	GCGC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	174, 295
LpnPI	CCDG	7 cut(s)	17, 98, 108, 156, 237, 246, 264
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	1 cut(s)	155
MalI	GATC	2 cut(s)	176, 297
MboI	GATC	2 cut(s)	174, 295
MboII	GAAGA	7 cut(s)	50, 53, 56, 59, 200, 257, 300
MfeI	CAATTG	1 cut(s)	195
MluCI	AATT	5 cut(s)	164, 195, 356, 373, 418
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	2 cut(s)	28, 214
Mph1103I	ATGCAT	1 cut(s)	290
MseI	TTAA	1 cut(s)	168
MspI	CCGG	1 cut(s)	143
MunI	CAATTG	1 cut(s)	195
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	2 cut(s)	174, 295
NlaIII	CATG	1 cut(s)	207
NlaIV	GGNNCC	1 cut(s)	369
NsbI	TGCGCA	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	290
NspI	RCATGY	1 cut(s)	207
PciI	ACATGT	1 cut(s)	203
PfeI	GAWTC	4 cut(s)	71, 94, 151, 349
PinAI	ACCGGT	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	338
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PscI	ACATGT	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	254
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	2 cut(s)	174, 295
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	374
SetI	ASST	3 cut(s)	90, 127, 273
SfaNI	GCATC	1 cut(s)	404
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	5 cut(s)	164, 195, 356, 373, 418
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	16
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	5 cut(s)	164, 195, 356, 373, 418
TatI	WGTACW	1 cut(s)	115
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	4 cut(s)	71, 94, 151, 349
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	3 cut(s)	21, 28, 188
TspRI	CASTG	3 cut(s)	21, 28, 188
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	4 cut(s)	164, 356, 373, 418
XbaI	TCTAGA	1 cut(s)	154
XceI	RCATGY	1 cut(s)	207
XspI	CTAG	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.