Rorug05G0145900

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004376
Physical Location & Seq
Reverse (-)
13534572 .. 13536307
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0145900.1

Sequence Viewer

Length: 1089 bp
ATGGCCCCTACTACTTCACTTTTCAAAGTGCTCCTCCCAATCTTCTTCATAATCCTCGTCTCCGCAATAATTCCTCAAGCTCATTCGATATCCGAGAGTGATGAATGCCAGTCTGAAACTACCAACTCCTGCCACGACAAGGCAGGAGCTGTGCCCCTCAAAATCATAGCCATTACTTCAATCCTGGTCACCAGCATGATCGGTGTGTCCTTGCCACTCGTCACTCGCACCATACCCGCATTGCACCCCGATCGAGACATATTCGTGGTCGTCAAGTGCTTTGCCGGTGGCATTATTCTTGCCACGGGGTTCATGCATGTTTTGCCAGACTCTTTTGACATGTTGTCCTCGAATTGTTTGGATGAGAAGCCGTGGCACAAGTTCCCTTTCACTGGGTTTGTTGCTATGTTGTCTGCTATTGTGACTATGATGGTGGACTCCATGGCTACTAGCATCTACAGCAGGAGATCAAAAGCCGGAGTTAACCCCAATTCTGATGGTGTTGCTGCAGCCATTGAGGGAGATCAAGAGATGGCTGTGGCGGGTGGTGGCCATGGACATTTTCATTCACACAATCATCAAGTCAAAGGAGGAAGCGAGTCACAGTTGTCACGCTATCGCGTTGTTGCCATGGTATTGGAACTGGGAATTATTGTTCACTCAATTGTTATAGGGCTTTCTCTTGGAGCTTCAAACAATACTTGCACCATTAAAGGTCTTGTAGCTGCCCTTTGCTTCCATCAAATGTTTGAAGGCATGGGCCTTGGTGGTTGCATTCTCCAGGCTGAGTTCAAGTTCATGAAGAAGGTAGTACTGGTGTTCTTCTTCTCAGCAACAACCCCATCTGGAATTGCACTGGGAATGGCCCTGTCAAAAATGTACAAAGAAAACAGTCCAAGTGCATTAGTGACAGTAGGACTGCTGAATGCTTCTTCAGCTGGGCTCCTCATCTACATGGCTTTGGTTGATCTTCTCTCTGCTGACTTCATGGGTCCAAAGTTGCAACGCAGCATCAAGCTCCAGATCAAGTCTTACATGGCGGTTCTTTTGGGTGCTGGTGGCATGTCTCTGTTGGCAAAGTGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_sub6

Protein Analysis

362

Amino Acids

38.47

Weight (kDa)

8.14

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 52 - 359 3.9e-84 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 621
AciI CCGC 4 cut(s) 63, 237, 542, 1040
AcoI YGGCCR 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 918
AfaI GTAC 2 cut(s) 813, 881
AfiI CCNNNNNNNGG 2 cut(s) 139, 392
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 5 cut(s) 25, 180, 693, 752, 793
AhdI GACNNNNNGTC 1 cut(s) 343
AjnI CCWGG 2 cut(s) 183, 780
AloI GAACNNNNNNTCC 2 cut(s) 639, 671
AluBI AGCT 6 cut(s) 80, 149, 689, 725, 938, 1018
AluI AGCT 6 cut(s) 80, 149, 689, 725, 938, 1018
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 3 cut(s) 64, 249, 1071
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 4 cut(s) 3, 550, 760, 864
ApeKI GCWGC 4 cut(s) 506, 509, 725, 1008
AspS9I GGNCC 4 cut(s) 4, 760, 865, 992
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 992
BaeGI GKGCMC 1 cut(s) 156
BalI TGGCCA 1 cut(s) 552
BanII GRGCYC 1 cut(s) 945
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 4 cut(s) 493, 521, 712, 1020
BccI CCATC 5 cut(s) 424, 491, 526, 747, 850
BceAI ACGGC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BciT130I CCWGG 2 cut(s) 185, 782
BcoDI GTCTC 3 cut(s) 64, 249, 1071
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 2 cut(s) 457, 507
BisI GCNGC 4 cut(s) 507, 510, 726, 1009
BlsI GCNGC 4 cut(s) 508, 511, 727, 1010
BmcAI AGTACT 1 cut(s) 813
Bme1390I CCNGG 2 cut(s) 185, 782
Bme18I GGWCC 1 cut(s) 992
BmeRI GACNNNNNGTC 1 cut(s) 343
BmgT120I GGNCC 4 cut(s) 4, 760, 865, 992
BmiI GGNNCC 3 cut(s) 6, 944, 993
BmrFI CCNGG 2 cut(s) 185, 782
BmrI ACTGGG 3 cut(s) 402, 653, 866
BmsI GCATC 2 cut(s) 462, 1020
BmuI ACTGGG 3 cut(s) 402, 653, 866
BpmI CTGGAG 2 cut(s) 764, 1004
BpuEI CTTGAG 1 cut(s) 60
BsaJI CCNNGG 6 cut(s) 303, 371, 441, 553, 630, 763
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 392
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 5 cut(s) 109, 397, 648, 819, 861
Bse3DI GCAATG 1 cut(s) 239
BseBI CCWGG 2 cut(s) 185, 782
BseDI CCNNGG 6 cut(s) 303, 371, 441, 553, 630, 763
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 2 cut(s) 139, 392
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 2 cut(s) 777, 843
BseNI ACTGG 5 cut(s) 109, 397, 648, 819, 861
BseRI GAGGAG 2 cut(s) 23, 935
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 4 cut(s) 493, 521, 712, 1020
BseYI CCCAGC 1 cut(s) 938
Bsh1236I CGCG 1 cut(s) 621
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 4 cut(s) 5, 552, 762, 866
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 2 cut(s) 285, 477
BslI CCNNNNNNNGG 2 cut(s) 139, 392
BsmAI GTCTC 3 cut(s) 64, 249, 1071
BsmBI CGTCTC 1 cut(s) 64
BsmI GAATGC 3 cut(s) 110, 774, 931
BsnI GGCC 4 cut(s) 5, 552, 762, 866
Bsp1286I GDGCHC 3 cut(s) 33, 156, 945
Bsp1407I TGTACA 1 cut(s) 879
Bsp143I GATC 6 cut(s) 198, 250, 467, 523, 967, 1023
Bsp19I CCATGG 3 cut(s) 441, 553, 630
BspACI CCGC 4 cut(s) 63, 237, 542, 1040
BspANI GGCC 4 cut(s) 5, 552, 762, 866
BspCNI CTCAG 2 cut(s) 778, 842
BspFNI CGCG 1 cut(s) 621
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 3 cut(s) 6, 944, 993
BspMAI CTGCAG 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 284
BsrGI TGTACA 1 cut(s) 879
BsrI ACTGG 5 cut(s) 109, 397, 648, 819, 861
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 6 cut(s) 303, 371, 441, 553, 630, 763
BssMI GATC 6 cut(s) 198, 250, 467, 523, 967, 1023
BssT1I CCWWGG 4 cut(s) 441, 553, 630, 763
Bst2UI CCWGG 2 cut(s) 185, 782
Bst4CI ACNGT 3 cut(s) 606, 893, 913
BstAPI GCANNNNNTGC 1 cut(s) 322
BstAUI TGTACA 1 cut(s) 879
BstDEI CTNAG 2 cut(s) 786, 829
BstDSI CCRYGG 5 cut(s) 303, 371, 441, 553, 630
BstEII GGTNACC 1 cut(s) 187
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 1 cut(s) 621
BstKTI GATC 6 cut(s) 201, 253, 470, 526, 970, 1026
BstMAI GTCTC 3 cut(s) 64, 249, 1071
BstMBI GATC 6 cut(s) 198, 250, 467, 523, 967, 1023
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 4 cut(s) 322, 459, 935, 1082
BstNI CCWGG 2 cut(s) 185, 782
BstNSI RCATGY 3 cut(s) 320, 343, 1066
BstPI GGTNACC 1 cut(s) 187
BstSCI CCNGG 2 cut(s) 183, 780
BstSFI CTRYAG 2 cut(s) 457, 507
BstSLI GKGCMC 1 cut(s) 156
BstUI CGCG 1 cut(s) 621
BstV1I GCAGC 4 cut(s) 493, 521, 712, 1020
BstXI CCANNNNNNTGG 1 cut(s) 637
BsuRI GGCC 4 cut(s) 5, 552, 762, 866
BtgI CCRYGG 5 cut(s) 303, 371, 441, 553, 630
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 2 cut(s) 390, 854
CaiI CAGNNNCTG 1 cut(s) 149
CciI TCATGA 1 cut(s) 798
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 4 cut(s) 4, 760, 865, 992
Csp6I GTAC 2 cut(s) 812, 880
CviQI GTAC 2 cut(s) 812, 880
DdeI CTNAG 2 cut(s) 786, 829
DpnI GATC 6 cut(s) 200, 252, 469, 525, 969, 1025
DpnII GATC 6 cut(s) 198, 250, 467, 523, 967, 1023
DriI GACNNNNNGTC 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 550
Eam1105I GACNNNNNGTC 1 cut(s) 343
Eco130I CCWWGG 4 cut(s) 441, 553, 630, 763
Eco24I GRGCYC 1 cut(s) 945
Eco32I GATATC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 992
Eco57I CTGAAG 1 cut(s) 918
Eco91I GGTNACC 1 cut(s) 187
EcoO65I GGTNACC 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 183, 780
EcoRV GATATC 1 cut(s) 90
EcoT14I CCWWGG 4 cut(s) 441, 553, 630, 763
EcoT22I ATGCAT 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 945
ErhI CCWWGG 4 cut(s) 441, 553, 630, 763
Esp3I CGTCTC 1 cut(s) 64
FauI CCCGC 2 cut(s) 244, 535
Fnu4HI GCNGC 4 cut(s) 507, 510, 726, 1009
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 945
Fsp4HI GCNGC 4 cut(s) 507, 510, 726, 1009
FspBI CTAG 1 cut(s) 450
GluI GCNGC 4 cut(s) 507, 510, 726, 1009
GsaI CCCAGC 1 cut(s) 942
GsuI CTGGAG 2 cut(s) 764, 1004
HaeIII GGCC 4 cut(s) 5, 552, 762, 866
HapII CCGG 2 cut(s) 285, 477
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 3 cut(s) 329, 437, 599
HpaI GTTAAC 1 cut(s) 484
HpaII CCGG 2 cut(s) 285, 477
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 3 cut(s) 436, 484, 658
Hpy188I TCNGA 3 cut(s) 94, 115, 496
Hpy188III TCNNGA 5 cut(s) 254, 527, 799, 846, 1021
Hpy8I GTNNAC 3 cut(s) 436, 484, 658
HpyAV CCTTC 2 cut(s) 746, 799
HpyCH4III ACNGT 3 cut(s) 606, 893, 913
HpyCH4V TGCA 8 cut(s) 244, 316, 509, 705, 774, 854, 902, 1003
HpyF10VI GCNNNNNNNGC 4 cut(s) 322, 459, 935, 1082
HpyF3I CTNAG 2 cut(s) 786, 829
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 6 cut(s) 198, 250, 467, 523, 967, 1023
LmnI GCTCC 5 cut(s) 36, 146, 686, 948, 1023
Lsp1109I GCAGC 4 cut(s) 493, 521, 712, 1020
LweI GCATC 2 cut(s) 462, 1020
MaeI CTAG 1 cut(s) 450
MaeIII GTNAC 6 cut(s) 187, 220, 421, 600, 609, 907
MalI GATC 6 cut(s) 200, 252, 469, 525, 969, 1025
MboI GATC 6 cut(s) 198, 250, 467, 523, 967, 1023
MboII GAAGA 7 cut(s) 34, 37, 814, 814, 817, 924, 962
MfeI CAATTG 1 cut(s) 663
MhlI GDGCHC 3 cut(s) 33, 156, 945
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 6 cut(s) 69, 352, 490, 648, 663, 849
MluNI TGGCCA 1 cut(s) 552
MlyI GAGTC 3 cut(s) 323, 431, 608
MnlI CCTC 8 cut(s) 44, 65, 84, 167, 358, 511, 584, 956
Mox20I TGGCCA 1 cut(s) 552
Mph1103I ATGCAT 1 cut(s) 318
MscI TGGCCA 1 cut(s) 552
MseI TTAA 3 cut(s) 483, 711, 1087
MslI CAYNNNNRTG 3 cut(s) 194, 263, 953
Msp20I TGGCCA 1 cut(s) 552
MspA1I CMGCKG 1 cut(s) 938
MspI CCGG 2 cut(s) 285, 477
MspR9I CCNGG 2 cut(s) 185, 782
MunI CAATTG 1 cut(s) 663
Mva1269I GAATGC 3 cut(s) 110, 774, 931
MvaI CCWGG 2 cut(s) 185, 782
MvnI CGCG 1 cut(s) 621
MwoI GCNNNNNNNGC 4 cut(s) 322, 459, 935, 1082
NcoI CCATGG 3 cut(s) 441, 553, 630
NdeII GATC 6 cut(s) 198, 250, 467, 523, 967, 1023
NlaIV GGNNCC 3 cut(s) 6, 944, 993
NmuCI GTSAC 6 cut(s) 187, 220, 421, 600, 609, 907
NsiI ATGCAT 1 cut(s) 318
NspI RCATGY 3 cut(s) 320, 343, 1066
PagI TCATGA 1 cut(s) 798
PciI ACATGT 1 cut(s) 339
PctI GAATGC 3 cut(s) 110, 774, 931
PkrI GCNGC 4 cut(s) 508, 511, 727, 1010
Ple19I CGATCG 1 cut(s) 253
PleI GAGTC 3 cut(s) 323, 431, 607
PpsI GAGTC 3 cut(s) 323, 431, 607
PscI ACATGT 1 cut(s) 339
Psp6I CCWGG 2 cut(s) 183, 780
PspEI GGTNACC 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 938
PspGI CCWGG 2 cut(s) 183, 780
PspN4I GGNNCC 3 cut(s) 6, 944, 993
PspPI GGNCC 4 cut(s) 4, 760, 865, 992
PstI CTGCAG 1 cut(s) 511
PstNI CAGNNNCTG 1 cut(s) 149
PvuI CGATCG 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 2 cut(s) 813, 881
RsaNI GTAC 2 cut(s) 812, 880
RseI CAYNNNNRTG 3 cut(s) 194, 263, 953
SaqAI TTAA 3 cut(s) 483, 711, 1087
SatI GCNGC 4 cut(s) 507, 510, 726, 1009
Sau3AI GATC 6 cut(s) 198, 250, 467, 523, 967, 1023
Sau96I GGNCC 4 cut(s) 4, 760, 865, 992
ScaI AGTACT 1 cut(s) 813
SchI GAGTC 3 cut(s) 323, 431, 608
ScrFI CCNGG 2 cut(s) 185, 782
SduI GDGCHC 3 cut(s) 33, 156, 945
SetI ASST 8 cut(s) 82, 151, 691, 718, 727, 810, 940, 1020
SfaNI GCATC 2 cut(s) 462, 1020
SfcI CTRYAG 2 cut(s) 457, 507
SinI GGWCC 1 cut(s) 992
SmiMI CAYNNNNRTG 3 cut(s) 194, 263, 953
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 6 cut(s) 69, 352, 490, 648, 663, 849
SsiI CCGC 4 cut(s) 63, 237, 542, 1040
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 2 cut(s) 183, 780
StyI CCWWGG 4 cut(s) 441, 553, 630, 763
TaaI ACNGT 3 cut(s) 606, 893, 913
TaqI TCGA 3 cut(s) 86, 253, 350
TasI AATT 6 cut(s) 69, 352, 490, 648, 663, 849
TatI WGTACW 2 cut(s) 811, 879
Tru1I TTAA 3 cut(s) 483, 711, 1087
Tru9I TTAA 3 cut(s) 483, 711, 1087
TscAI CASTG 2 cut(s) 397, 861
TseFI GTSAC 6 cut(s) 187, 220, 421, 600, 609, 907
TseI GCWGC 4 cut(s) 506, 509, 725, 1008
Tsp45I GTSAC 6 cut(s) 187, 220, 421, 600, 609, 907
TspDTI ATGAA 7 cut(s) 37, 117, 301, 554, 787, 815, 976
TspRI CASTG 2 cut(s) 397, 861
VpaK11BI GGWCC 1 cut(s) 992
XceI RCATGY 3 cut(s) 320, 343, 1066
XspI CTAG 1 cut(s) 450
ZrmI AGTACT 1 cut(s) 813
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.