RchiOBHm_Chr6g0279991

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004376
Physical Location & Seq
Forward (+)
43233498 .. 43235695
2198 bp
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UTR
Exon/CDS
Intron
PRQ25108

Sequence Viewer

Length: 429 bp
ATGGAGGGAGATACAGTGCGCAGTGAACATCAGGAGGAAGAAGAAGAAGAAGAATATGTATTGCTTGATCTTGATTCTGTTTACTCCCAGCTTCAGATTCCACCAAACGCACCATATGTACTTTCAGGTTTGGATACAATGCAACCAGTATTGATTCTAGATGGCAAATTTAAGTTGATCGGTCAGTGGGATGAGACAATTGGGACATGTCTTTTATTCAAAGAGGAAGTTGTCCCTGTTGTTCACGAAGAAACAGGACCATCAGAAGCAAACCTTTTTGCTGGCAAATGCATTGTTGATCAAAAGCAATCTTCAAGCAAGCAAGTAAAACCAGTTGGCCGCACTCATAGGATTCTAAAATTCAGATTGGCACCAAATTTTGACTCTCCTAATACTGCATCTGCACAGACTGAGCAAGTAAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_sub6

Protein Analysis

142

Amino Acids

15.9

Weight (kDa)

4.55

Isoelectric Point (pI)

58.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIIC_sub6 PF10419 14 - 123 1.1e-17 TFIIIC subunit triple barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 370
AciI CCGC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 4 cut(s) 167, 359, 376, 421
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 2 cut(s) 220, 315
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 1 cut(s) 337
ApoI RAATTY 4 cut(s) 167, 359, 376, 421
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 257
AvaII GGWCC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 370
BccI CCATC 2 cut(s) 155, 268
BciVI GTATCC 1 cut(s) 127
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 158
BfuI GTATCC 1 cut(s) 127
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 372
BmsI GCATC 1 cut(s) 407
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 146, 332
BseGI GGATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 2 cut(s) 146, 332
BseYI CCCAGC 1 cut(s) 87
BsgI GTGCAG 1 cut(s) 387
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 370
BslFI GGGAC 2 cut(s) 217, 218
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 2 cut(s) 217, 218
BsnI GGCC 1 cut(s) 339
Bsp143I GATC 3 cut(s) 67, 177, 298
BspACI CCGC 1 cut(s) 340
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 372
BspT107I GGYRCC 1 cut(s) 370
BsrI ACTGG 2 cut(s) 146, 332
BssMI GATC 3 cut(s) 67, 177, 298
Bst4CI ACNGT 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 283, 320
BstDEI CTNAG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 196
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 3 cut(s) 70, 180, 301
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 3 cut(s) 67, 177, 298
BstNSI RCATGY 1 cut(s) 210
BsuI GTATCC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 339
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 3 cut(s) 21, 28, 191
Cac8I GCNNGC 2 cut(s) 283, 320
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 119
CviAII CATG 1 cut(s) 207
CviJI RGCY 2 cut(s) 91, 339
CviKI_1 RGCY 2 cut(s) 91, 339
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 1 cut(s) 411
DpnI GATC 3 cut(s) 69, 179, 300
DpnII GATC 3 cut(s) 67, 177, 298
EaeI YGGCCR 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 77
EcoT22I ATGCAT 1 cut(s) 293
FaeI CATG 1 cut(s) 210
FaiI YATR 5 cut(s) 57, 115, 117, 208, 348
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 2 cut(s) 217, 218
FatI CATG 1 cut(s) 206
FauNDI CATATG 1 cut(s) 115
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 340
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 340
FspBI CTAG 1 cut(s) 158
FspI TGCGCA 1 cut(s) 20
GlaI GCGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 340
GsaI CCCAGC 1 cut(s) 91
HaeIII GGCC 1 cut(s) 339
HhaI GCGC 1 cut(s) 21
Hin1II CATG 1 cut(s) 210
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 5 cut(s) 74, 97, 154, 352, 383
Hpy166II GTNNAC 3 cut(s) 26, 82, 244
Hpy188I TCNGA 3 cut(s) 96, 265, 365
Hpy188III TCNNGA 4 cut(s) 32, 71, 158, 245
Hpy8I GTNNAC 3 cut(s) 26, 82, 244
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 4 cut(s) 142, 291, 398, 404
HpyF3I CTNAG 1 cut(s) 411
Hsp92II CATG 1 cut(s) 210
HspAI GCGC 1 cut(s) 19
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 67, 177, 298
LpnPI CCDG 8 cut(s) 17, 101, 111, 159, 240, 249, 267, 345
LweI GCATC 1 cut(s) 407
MaeI CTAG 1 cut(s) 158
MalI GATC 3 cut(s) 69, 179, 300
MboI GATC 3 cut(s) 67, 177, 298
MboII GAAGA 7 cut(s) 50, 53, 56, 59, 62, 260, 303
MfeI CAATTG 1 cut(s) 198
MluCI AATT 5 cut(s) 167, 198, 359, 376, 421
MlyI GAGTC 1 cut(s) 377
MnlI CCTC 2 cut(s) 28, 217
Mph1103I ATGCAT 1 cut(s) 293
MseI TTAA 1 cut(s) 171
MunI CAATTG 1 cut(s) 198
NdeI CATATG 1 cut(s) 115
NdeII GATC 3 cut(s) 67, 177, 298
NlaIII CATG 1 cut(s) 210
NlaIV GGNNCC 1 cut(s) 372
NsbI TGCGCA 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 293
NspI RCATGY 1 cut(s) 210
PciI ACATGT 1 cut(s) 206
PfeI GAWTC 4 cut(s) 74, 97, 154, 352
PkrI GCNGC 1 cut(s) 341
PleI GAGTC 1 cut(s) 377
PpsI GAGTC 1 cut(s) 377
PscI ACATGT 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 1 cut(s) 257
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 3 cut(s) 67, 177, 298
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 377
SetI ASST 3 cut(s) 93, 130, 276
SfaNI GCATC 1 cut(s) 407
SinI GGWCC 1 cut(s) 257
Sse9I AATT 5 cut(s) 167, 198, 359, 376, 421
SsiI CCGC 1 cut(s) 340
SspMI CTAG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 16
TaqII GACCGA 1 cut(s) 170
TasI AATT 5 cut(s) 167, 198, 359, 376, 421
TatI WGTACW 1 cut(s) 118
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 4 cut(s) 74, 97, 154, 352
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 3 cut(s) 21, 28, 191
TspRI CASTG 3 cut(s) 21, 28, 191
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 4 cut(s) 167, 359, 376, 421
XbaI TCTAGA 1 cut(s) 157
XceI RCATGY 1 cut(s) 210
XspI CTAG 1 cut(s) 158
Zsp2I ATGCAT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.