RLG00000013100

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004376
Physical Location & Seq
Reverse (-)
26210860 .. 26212909
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013100

Sequence Viewer

Length: 603 bp
ATGGACGGGCTTTGTGATTTGGATACTACTTACCTAGTCGACCTTCTCCTCCGGCCTAGCCACGTCGGAGCCCTTAACGGTGACGTCGGCACCGTTAAATTGCCATTTCGGATTGACCCAAAAACCCCGTTCGCCACAACCCGGTTCAATTCACATCTTCACAAACTGATACAGGCTATGGAGGGAGAGACAGTGCACAGTGAACATCAGGAGGAAGAAGAAGAAGAATATGTATTGCTTGATCTTGATTCTGTTTACTCCCAGCTTCAGATTCCACCAAACGCACCATATGTACTTTCAGGTTTGGATACAATGCAACCGGTATTGATTCTAGATGGCAAATTTAAGTTGATCGGTCAGTGGGATGAGACAATTGGGACATGTCTTTTATTCAAAGAGGAAGTTGTCCCTGTTGTTCACGAAGAAACAGGACCATCAGAAGCAAACCTTTTTGCTGGCAAATGCATTGTTGATCAAAAGCAATCTTCAAGCAAGCAAGTAAAACCAGTTGGCCGCACTCATAGGATTCTAAAATTCAGATTGGCACCAAATTTTGACTCTCCTAATGCTGCATCTGCACAGACTGAGCAAGTAAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_sub6

Protein Analysis

201

Amino Acids

22.25

Weight (kDa)

4.93

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIIC_sub6 PF10419 72 - 181 3.1e-17 TFIIIC subunit triple barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 87
AccB1I GGYRCC 2 cut(s) 89, 544
AccI GTMKAC 1 cut(s) 39
AciI CCGC 1 cut(s) 514
AcoI YGGCCR 1 cut(s) 511
AcsI RAATTY 4 cut(s) 341, 533, 550, 595
AcuI CTGAAG 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 141
AflIII ACRYGT 1 cut(s) 380
AgeI ACCGGT 1 cut(s) 319
AgsI TTSAA 3 cut(s) 148, 394, 489
AjiI CACGTC 1 cut(s) 64
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 2 cut(s) 182, 362
Alw44I GTGCAC 1 cut(s) 194
AoxI GGCC 2 cut(s) 53, 511
ApaLI GTGCAC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 4 cut(s) 341, 533, 550, 595
AsiGI ACCGGT 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 431
BaeGI GKGCMC 1 cut(s) 198
BanI GGYRCC 2 cut(s) 89, 544
BanII GRGCYC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 556
BccI CCATC 2 cut(s) 329, 442
BciVI GTATCC 2 cut(s) 16, 301
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 2 cut(s) 182, 362
BfaI CTAG 3 cut(s) 35, 57, 332
BfuI GTATCC 2 cut(s) 16, 301
BisI GCNGC 2 cut(s) 514, 570
BlsI GCNGC 2 cut(s) 515, 571
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 431
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 3 cut(s) 70, 91, 546
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 581
BpuMI CCSGG 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 506
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 198
BseXI GCAGC 1 cut(s) 556
BseYI CCCAGC 1 cut(s) 261
BsgI GTGCAG 1 cut(s) 561
BshFI GGCC 2 cut(s) 55, 513
BshNI GGYRCC 2 cut(s) 89, 544
BshTI ACCGGT 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 3 cut(s) 52, 142, 320
BslFI GGGAC 2 cut(s) 391, 392
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 2 cut(s) 182, 362
BsmFI GGGAC 2 cut(s) 391, 392
BsnI GGCC 2 cut(s) 55, 513
Bsp1286I GDGCHC 2 cut(s) 73, 198
Bsp143I GATC 3 cut(s) 241, 351, 472
BspACI CCGC 1 cut(s) 514
BspANI GGCC 2 cut(s) 55, 513
BspCNI CTCAG 1 cut(s) 577
BspLI GGNNCC 3 cut(s) 70, 91, 546
BspT107I GGYRCC 2 cut(s) 89, 544
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 319
BssMI GATC 3 cut(s) 241, 351, 472
BssNI GRCGYC 1 cut(s) 84
Bst4CI ACNGT 4 cut(s) 80, 94, 193, 200
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 457, 494
BstDEI CTNAG 1 cut(s) 585
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 3 cut(s) 244, 354, 475
BstMAI GTCTC 2 cut(s) 182, 362
BstMBI GATC 3 cut(s) 241, 351, 472
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstNSI RCATGY 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 556
BsuI GTATCC 2 cut(s) 16, 301
BsuRI GGCC 2 cut(s) 55, 513
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 3 cut(s) 198, 205, 365
Cac8I GCNNGC 2 cut(s) 457, 494
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 293
CspAI ACCGGT 1 cut(s) 319
CviAII CATG 1 cut(s) 381
CviJI RGCY 7 cut(s) 10, 55, 60, 71, 176, 265, 513
CviKI_1 RGCY 7 cut(s) 10, 55, 60, 71, 176, 265, 513
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 585
DpnI GATC 3 cut(s) 243, 353, 474
DpnII GATC 3 cut(s) 241, 351, 472
EaeI YGGCCR 1 cut(s) 511
Eco24I GRGCYC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 251
EcoT22I ATGCAT 1 cut(s) 467
EcoT38I GRGCYC 1 cut(s) 73
FaeI CATG 1 cut(s) 384
FaiI YATR 6 cut(s) 179, 231, 289, 291, 382, 522
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 2 cut(s) 391, 392
FatI CATG 1 cut(s) 380
FauNDI CATATG 1 cut(s) 289
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 514, 570
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 2 cut(s) 514, 570
FspBI CTAG 3 cut(s) 35, 57, 332
GluI GCNGC 2 cut(s) 514, 570
GsaI CCCAGC 1 cut(s) 265
HaeIII GGCC 2 cut(s) 55, 513
HapII CCGG 3 cut(s) 52, 142, 320
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 1 cut(s) 384
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 5 cut(s) 248, 271, 328, 526, 557
HpaII CCGG 3 cut(s) 52, 142, 320
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 5 cut(s) 40, 196, 203, 256, 418
Hpy188I TCNGA 5 cut(s) 68, 111, 270, 439, 539
Hpy188III TCNNGA 4 cut(s) 209, 245, 332, 419
Hpy8I GTNNAC 5 cut(s) 40, 196, 203, 256, 418
Hpy99I CGWCG 2 cut(s) 68, 89
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 4 cut(s) 80, 94, 193, 200
HpyCH4IV ACGT 2 cut(s) 63, 84
HpyCH4V TGCA 5 cut(s) 196, 316, 465, 572, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 1 cut(s) 585
HpySE526I ACGT 2 cut(s) 63, 84
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 3 cut(s) 241, 351, 472
LmnI GCTCC 1 cut(s) 68
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 1 cut(s) 581
MaeI CTAG 3 cut(s) 35, 57, 332
MaeII ACGT 2 cut(s) 63, 84
MaeIII GTNAC 1 cut(s) 80
MalI GATC 3 cut(s) 243, 353, 474
MboI GATC 3 cut(s) 241, 351, 472
MboII GAAGA 7 cut(s) 149, 227, 230, 233, 236, 434, 477
MfeI CAATTG 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 73, 198
MluCI AATT 7 cut(s) 98, 148, 341, 372, 533, 550, 595
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 4 cut(s) 59, 175, 205, 391
Mph1103I ATGCAT 1 cut(s) 467
MseI TTAA 3 cut(s) 75, 96, 345
MspI CCGG 3 cut(s) 52, 142, 320
MspR9I CCNGG 1 cut(s) 142
MunI CAATTG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 575
NciI CCSGG 1 cut(s) 142
NdeI CATATG 1 cut(s) 289
NdeII GATC 3 cut(s) 241, 351, 472
NlaIII CATG 1 cut(s) 384
NlaIV GGNNCC 3 cut(s) 70, 91, 546
NmuCI GTSAC 1 cut(s) 80
NsiI ATGCAT 1 cut(s) 467
NspI RCATGY 1 cut(s) 384
PciI ACATGT 1 cut(s) 380
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 4 cut(s) 248, 271, 328, 526
PinAI ACCGGT 1 cut(s) 319
PkrI GCNGC 2 cut(s) 515, 571
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
PscI ACATGT 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 261
PspN4I GGNNCC 3 cut(s) 70, 91, 546
PspPI GGNCC 1 cut(s) 431
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SalI GTCGAC 1 cut(s) 38
SaqAI TTAA 3 cut(s) 75, 96, 345
SatI GCNGC 2 cut(s) 514, 570
Sau3AI GATC 3 cut(s) 241, 351, 472
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 2 cut(s) 73, 198
SetI ASST 7 cut(s) 36, 45, 66, 87, 267, 304, 450
SfaNI GCATC 1 cut(s) 581
SinI GGWCC 1 cut(s) 431
Sse9I AATT 7 cut(s) 98, 148, 341, 372, 533, 550, 595
SsiI CCGC 1 cut(s) 514
SspMI CTAG 3 cut(s) 35, 57, 332
StyD4I CCNGG 1 cut(s) 140
TaaI ACNGT 4 cut(s) 80, 94, 193, 200
TaiI ACGT 2 cut(s) 66, 87
TaqI TCGA 1 cut(s) 39
TaqII GACCGA 1 cut(s) 344
TasI AATT 7 cut(s) 98, 148, 341, 372, 533, 550, 595
TatI WGTACW 1 cut(s) 292
TauI GCSGC 1 cut(s) 516
TfiI GAWTC 4 cut(s) 248, 271, 328, 526
Tru1I TTAA 3 cut(s) 75, 96, 345
Tru9I TTAA 3 cut(s) 75, 96, 345
TscAI CASTG 3 cut(s) 198, 205, 365
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 80
TspRI CASTG 3 cut(s) 198, 205, 365
VneI GTGCAC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 431
XapI RAATTY 4 cut(s) 341, 533, 550, 595
XbaI TCTAGA 1 cut(s) 331
XceI RCATGY 1 cut(s) 384
XmiI GTMKAC 1 cut(s) 39
XspI CTAG 3 cut(s) 35, 57, 332
ZraI GACGTC 1 cut(s) 85
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.