Rh6DG235300

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004376
Physical Location & Seq
Forward (+)
41971302 .. 41980112
8811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG235300.1

Sequence Viewer

Length: 543 bp
ATGGAGGGAGATACAGTGCGCAGTGAACATCAGGAGGAAGAAGAAGAAGAAGAATATGTATTGCTTGATCTTGATTCTGTTTACTCCCAGCTTCAGATTCCACCAAACGCACCATATGTACTTTCAGGTTTGGATACAATGCAACCAGTATTGATTCTAGATGGCAAATTTAAGTTGATCGGTCAGTGGGATGAGACAATTGGGACATGTCTTTTATTCAAAGAGGAAGTTGTCCCTGTTGTTCACGAAGAAACAGGACCATCAGAAGCAAACCTTTTTGCTGGCAAATGCATTGTTGATCAAAAGCAATCTTCAAGCAAGCAAGTAAAACCAGTTGGCCGCACTCATAGGATTCTAAAATTCAGATTGGCACCAAATTTTGACTCTCCTAATACTGCATCTGCACAGACTGAGCAAGAAATGGAAAAGGAAGTTCACAATCCCACGATGGCGCGTGCATTGTGTTACAAGCAATCCGAGAGTAGTCCGGCGCTGCAGTCATCTGTTCCATGTGAGGCAGAACTCAACTCTCAACTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_sub6

Protein Analysis

180

Amino Acids

20.05

Weight (kDa)

4.59

Isoelectric Point (pI)

69.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIIC_sub6 PF10419 14 - 123 2.3e-17 TFIIIC subunit triple barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 370
AccII CGCG 1 cut(s) 454
AciI CCGC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 3 cut(s) 167, 359, 376
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 2 cut(s) 220, 315
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 493
ApoI RAATTY 3 cut(s) 167, 359, 376
AspLEI GCGC 3 cut(s) 21, 454, 493
AspS9I GGNCC 1 cut(s) 257
AvaII GGWCC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 480
BccI CCATC 3 cut(s) 155, 268, 442
BciVI GTATCC 1 cut(s) 127
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 494
BfoI RGCGCY 1 cut(s) 494
BfuI GTATCC 1 cut(s) 127
BisI GCNGC 2 cut(s) 340, 494
BlsI GCNGC 2 cut(s) 341, 495
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 372
BmsI GCATC 1 cut(s) 407
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse1I ACTGG 3 cut(s) 146, 332, 540
BseGI GGATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 3 cut(s) 146, 332, 540
BseXI GCAGC 1 cut(s) 480
BseYI CCCAGC 1 cut(s) 87
BsgI GTGCAG 1 cut(s) 387
Bsh1236I CGCG 1 cut(s) 454
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 370
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 2 cut(s) 217, 218
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 2 cut(s) 217, 218
BsnI GGCC 1 cut(s) 339
Bsp143I GATC 3 cut(s) 67, 177, 298
BspACI CCGC 1 cut(s) 340
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 403
BspFNI CGCG 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 372
BspMAI CTGCAG 1 cut(s) 498
BspT107I GGYRCC 1 cut(s) 370
BsrI ACTGG 3 cut(s) 146, 332, 540
BssMI GATC 3 cut(s) 67, 177, 298
Bst4CI ACNGT 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 283, 320, 456
BstDEI CTNAG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 454
BstH2I RGCGCY 1 cut(s) 494
BstHHI GCGC 3 cut(s) 21, 454, 493
BstKTI GATC 3 cut(s) 70, 180, 301
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 3 cut(s) 67, 177, 298
BstNSI RCATGY 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 494
BstUI CGCG 1 cut(s) 454
BstV1I GCAGC 1 cut(s) 480
BsuI GTATCC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 339
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 3 cut(s) 21, 28, 191
Cac8I GCNNGC 3 cut(s) 283, 320, 456
CfoI GCGC 3 cut(s) 21, 454, 493
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 119
CviAII CATG 2 cut(s) 207, 510
CviJI RGCY 2 cut(s) 91, 339
CviKI_1 RGCY 2 cut(s) 91, 339
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 1 cut(s) 411
DpnI GATC 3 cut(s) 69, 179, 300
DpnII GATC 3 cut(s) 67, 177, 298
EaeI YGGCCR 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 77
EcoT22I ATGCAT 1 cut(s) 293
FaeI CATG 2 cut(s) 210, 513
FaiI YATR 6 cut(s) 57, 115, 117, 208, 348, 511
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 2 cut(s) 217, 218
FatI CATG 2 cut(s) 206, 509
FauNDI CATATG 1 cut(s) 115
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 340, 494
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 340, 494
FspBI CTAG 1 cut(s) 158
FspI TGCGCA 1 cut(s) 20
GlaI GCGC 3 cut(s) 20, 453, 492
GluI GCNGC 2 cut(s) 340, 494
GsaI CCCAGC 1 cut(s) 91
HaeII RGCGCY 1 cut(s) 494
HaeIII GGCC 1 cut(s) 339
HapII CCGG 1 cut(s) 488
HhaI GCGC 3 cut(s) 21, 454, 493
Hin1II CATG 2 cut(s) 210, 513
Hin6I GCGC 3 cut(s) 19, 452, 491
HinP1I GCGC 3 cut(s) 19, 452, 491
HinfI GANTC 5 cut(s) 74, 97, 154, 352, 383
HpaII CCGG 1 cut(s) 488
Hpy166II GTNNAC 4 cut(s) 26, 82, 244, 436
Hpy188I TCNGA 4 cut(s) 96, 265, 365, 478
Hpy188III TCNNGA 4 cut(s) 32, 71, 158, 245
Hpy8I GTNNAC 4 cut(s) 26, 82, 244, 436
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 6 cut(s) 142, 291, 398, 404, 458, 496
HpyF3I CTNAG 1 cut(s) 411
Hsp92II CATG 2 cut(s) 210, 513
HspAI GCGC 3 cut(s) 19, 452, 491
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 67, 177, 298
Lsp1109I GCAGC 1 cut(s) 480
LweI GCATC 1 cut(s) 407
MaeI CTAG 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 464
MalI GATC 3 cut(s) 69, 179, 300
MboI GATC 3 cut(s) 67, 177, 298
MboII GAAGA 7 cut(s) 50, 53, 56, 59, 62, 260, 303
MfeI CAATTG 1 cut(s) 198
MluCI AATT 4 cut(s) 167, 198, 359, 376
MlyI GAGTC 1 cut(s) 377
MnlI CCTC 3 cut(s) 28, 217, 508
Mph1103I ATGCAT 1 cut(s) 293
MseI TTAA 1 cut(s) 171
MspI CCGG 1 cut(s) 488
MunI CAATTG 1 cut(s) 198
MvnI CGCG 1 cut(s) 454
NdeI CATATG 1 cut(s) 115
NdeII GATC 3 cut(s) 67, 177, 298
NlaIII CATG 2 cut(s) 210, 513
NlaIV GGNNCC 1 cut(s) 372
NsbI TGCGCA 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 293
NspI RCATGY 1 cut(s) 210
PciI ACATGT 1 cut(s) 206
PfeI GAWTC 4 cut(s) 74, 97, 154, 352
PkrI GCNGC 2 cut(s) 341, 495
PleI GAGTC 1 cut(s) 377
PpsI GAGTC 1 cut(s) 377
PscI ACATGT 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 1 cut(s) 257
PstI CTGCAG 1 cut(s) 498
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 340, 494
Sau3AI GATC 3 cut(s) 67, 177, 298
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 377
SetI ASST 3 cut(s) 93, 130, 276
SfaNI GCATC 1 cut(s) 407
SfcI CTRYAG 1 cut(s) 494
SinI GGWCC 1 cut(s) 257
Sse9I AATT 4 cut(s) 167, 198, 359, 376
SsiI CCGC 1 cut(s) 340
SspMI CTAG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 16
TaqII GACCGA 1 cut(s) 170
TasI AATT 4 cut(s) 167, 198, 359, 376
TatI WGTACW 1 cut(s) 118
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 4 cut(s) 74, 97, 154, 352
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 3 cut(s) 21, 28, 191
TseI GCWGC 1 cut(s) 493
TspRI CASTG 3 cut(s) 21, 28, 191
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 3 cut(s) 167, 359, 376
XbaI TCTAGA 1 cut(s) 157
XceI RCATGY 1 cut(s) 210
XspI CTAG 1 cut(s) 158
Zsp2I ATGCAT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.