AT2G15130

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003578
Physical Location & Seq
Forward (+)
6564808 .. 6566006
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15130.1

Sequence Viewer

Length: 678 bp
ATGGCTTGTCACAAAATTTTCCTTGTAATATCTCTAATGCTCGCTGTCTCATTGGTCAGTGCAGTTGACTTCTCTGTTGTCGACAATACTGGCGACTCTCCTGGAGGAAGGAGATTCCGGAATGAGATCGGCGGCGTGAGTTATGGCGAACAATCACTGAGAGATGCAACGGACTTCACGTGGCGTTTGTTCCAACAAACTAACCCTTCAGACAGAAAGGACGTTACAAAGATCACACTCTTCATGGAGAACAGTAACGGCATAGCATACAGCTCGCAAGACGAGATACATTACAACGCGGGATCTCTCGTGGATGACAAAGGATATGTAAGGAGGGGATTTACCGGGGTGGTTTATCACGAGGTGGTCCATTCTTGGCAGTGGAACGGTGCAGGTCGGGCTCCGGGAGGGCTTATCGAAGGGATCGCGGATTACGTGAGGCTGAAAGCGGGTTATGTTGCGAGTCATTGGGTGAGGCCTGGTGGTGGTGATAGGTGGGATCAGGGTTACGATGTCACCGCTAGGTTTTTGGAGTATTGTAACGATTTGAGGAATGGATTTGTGGCGGAGCTGAACAAGAAGATGAGGAGTGACTACAATGATGGCTTCTTTGTTGATTTGCTTGGGAAAGACGTTAATCAACTCTGGAGAGAGTACAAGGCCAACTATGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

225

Amino Acids

25.36

Weight (kDa)

5.95

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 20 - 219 6e-80 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 383
AccI GTMKAC 1 cut(s) 81
AccII CGCG 2 cut(s) 299, 428
AccIII TCCGGA 1 cut(s) 117
AciI CCGC 6 cut(s) 132, 299, 428, 449, 519, 566
AclWI GGATC 3 cut(s) 310, 431, 507
AcsI RAATTY 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 192
AcvI CACGTG 1 cut(s) 180
AdeI CACNNNGTG 1 cut(s) 364
AfaI GTAC 1 cut(s) 656
AfiI CCNNNNNNNGG 1 cut(s) 485
AjnI CCWGG 2 cut(s) 100, 478
AluBI AGCT 2 cut(s) 273, 571
AluI AGCT 2 cut(s) 273, 571
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 3 cut(s) 310, 431, 507
Aor13HI TCCGGA 1 cut(s) 117
AoxI GGCC 2 cut(s) 476, 660
ApoI RAATTY 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 367
AsuC2I CCSGG 2 cut(s) 346, 405
AsuHPI GGTGA 3 cut(s) 484, 500, 508
AvaII GGWCC 1 cut(s) 367
BanII GRGCYC 1 cut(s) 403
BauI CACGAG 2 cut(s) 308, 359
BbrPI CACGTG 1 cut(s) 180
BccI CCATC 1 cut(s) 596
BceAI ACGGC 1 cut(s) 274
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BciT130I CCWGG 2 cut(s) 102, 480
BcnI CCSGG 2 cut(s) 346, 405
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 1 cut(s) 522
BfuAI ACCTGC 1 cut(s) 383
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme1390I CCNGG 4 cut(s) 102, 346, 405, 480
Bme18I GGWCC 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 367
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 4 cut(s) 102, 346, 405, 480
BmsI GCATC 1 cut(s) 154
BpmI CTGGAG 2 cut(s) 123, 667
BpuMI CCSGG 2 cut(s) 346, 405
BsaAI YACGTR 2 cut(s) 180, 436
BsaJI CCNNGG 1 cut(s) 345
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse1I ACTGG 1 cut(s) 94
BseAI TCCGGA 1 cut(s) 117
BseBI CCWGG 2 cut(s) 102, 480
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 601
BsgI GTGCAG 2 cut(s) 81, 411
Bsh1236I CGCG 2 cut(s) 299, 428
BshFI GGCC 2 cut(s) 478, 662
BsiSI CCGG 3 cut(s) 118, 345, 404
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 1 cut(s) 52
BsnI GGCC 2 cut(s) 478, 662
Bsp1286I GDGCHC 1 cut(s) 403
Bsp13I TCCGGA 1 cut(s) 117
Bsp143I GATC 5 cut(s) 126, 231, 302, 423, 499
BspACI CCGC 6 cut(s) 132, 299, 428, 449, 519, 566
BspANI GGCC 2 cut(s) 478, 662
BspCNI CTCAG 1 cut(s) 150
BspEI TCCGGA 1 cut(s) 117
BspFNI CGCG 2 cut(s) 299, 428
BspLI GGNNCC 1 cut(s) 402
BspMI ACCTGC 1 cut(s) 383
BspPI GGATC 3 cut(s) 310, 431, 507
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 5 cut(s) 126, 231, 302, 423, 499
BssSI CACGAG 2 cut(s) 308, 359
Bst2BI CACGAG 2 cut(s) 308, 359
Bst2UI CCWGG 2 cut(s) 102, 480
Bst4CI ACNGT 2 cut(s) 254, 389
Bst6I CTCTTC 1 cut(s) 245
BstBAI YACGTR 2 cut(s) 180, 436
BstC8I GCNNGC 2 cut(s) 42, 275
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 2 cut(s) 299, 428
BstKTI GATC 5 cut(s) 129, 234, 305, 426, 502
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 5 cut(s) 126, 231, 302, 423, 499
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNI CCWGG 2 cut(s) 102, 480
BstSCI CCNGG 4 cut(s) 100, 344, 403, 478
BstUI CGCG 2 cut(s) 299, 428
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 2 cut(s) 478, 662
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 386
BtsIMutI CAGTG 3 cut(s) 64, 155, 386
BveI ACCTGC 1 cut(s) 383
Cac8I GCNNGC 2 cut(s) 42, 275
Cfr13I GGNCC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 655
CviAII CATG 1 cut(s) 244
CviJI RGCY 9 cut(s) 5, 273, 401, 412, 442, 478, 571, 606, 662
CviKI_1 RGCY 9 cut(s) 5, 273, 401, 412, 442, 478, 571, 606, 662
CviQI GTAC 1 cut(s) 655
DdeI CTNAG 1 cut(s) 158
DpnI GATC 5 cut(s) 128, 233, 304, 425, 501
DpnII GATC 5 cut(s) 126, 231, 302, 423, 499
DraIII CACNNNGTG 1 cut(s) 364
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
EciI GGCGGA 1 cut(s) 581
Eco147I AGGCCT 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 192
Eco72I CACGTG 1 cut(s) 180
EcoRII CCWGG 2 cut(s) 100, 478
EcoT38I GRGCYC 1 cut(s) 403
FaeI CATG 1 cut(s) 247
FaiI YATR 7 cut(s) 144, 245, 263, 268, 327, 456, 669
FatI CATG 1 cut(s) 243
FauI CCCGC 2 cut(s) 292, 442
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 1 cut(s) 133
FspBI CTAG 1 cut(s) 522
GluI GCNGC 1 cut(s) 133
GsuI CTGGAG 2 cut(s) 123, 667
HaeIII GGCC 2 cut(s) 478, 662
HapII CCGG 3 cut(s) 118, 345, 404
Hin1II CATG 1 cut(s) 247
HincII GTYRAC 2 cut(s) 67, 82
HindII GTYRAC 2 cut(s) 67, 82
HinfI GANTC 3 cut(s) 95, 114, 463
HpaII CCGG 3 cut(s) 118, 345, 404
HphI GGTGA 3 cut(s) 484, 500, 508
Hpy166II GTNNAC 2 cut(s) 67, 82
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 3 cut(s) 118, 359, 646
Hpy8I GTNNAC 2 cut(s) 67, 82
HpyAV CCTTC 3 cut(s) 102, 216, 413
HpyCH4III ACNGT 2 cut(s) 254, 389
HpyCH4IV ACGT 4 cut(s) 179, 222, 435, 633
HpyCH4V TGCA 3 cut(s) 62, 167, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 4 cut(s) 179, 222, 435, 633
Hsp92II CATG 1 cut(s) 247
Kpn2I TCCGGA 1 cut(s) 117
Kzo9I GATC 5 cut(s) 126, 231, 302, 423, 499
LmnI GCTCC 2 cut(s) 406, 568
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 522
MaeII ACGT 4 cut(s) 179, 222, 435, 633
MaeIII GTNAC 7 cut(s) 8, 223, 254, 506, 514, 539, 590
MalI GATC 5 cut(s) 128, 233, 304, 425, 501
MboI GATC 5 cut(s) 126, 231, 302, 423, 499
MboII GAAGA 2 cut(s) 232, 592
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 1 cut(s) 15
MlyI GAGTC 2 cut(s) 89, 472
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 8 cut(s) 98, 327, 355, 401, 432, 468, 543, 579
MroI TCCGGA 1 cut(s) 117
MseI TTAA 1 cut(s) 636
MspI CCGG 3 cut(s) 118, 345, 404
MspR9I CCNGG 4 cut(s) 102, 346, 405, 480
MvaI CCWGG 2 cut(s) 102, 480
MvnI CGCG 2 cut(s) 299, 428
MwoI GCNNNNNNNGC 1 cut(s) 398
NciI CCSGG 2 cut(s) 346, 405
NdeII GATC 5 cut(s) 126, 231, 302, 423, 499
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 402
NmuCI GTSAC 3 cut(s) 8, 514, 590
PceI AGGCCT 1 cut(s) 478
PcsI WCGNNNNNNNCGW 2 cut(s) 176, 432
PfeI GAWTC 1 cut(s) 114
PfoI TCCNGGA 2 cut(s) 100, 403
PkrI GCNGC 1 cut(s) 134
PleI GAGTC 2 cut(s) 89, 471
PmaCI CACGTG 1 cut(s) 180
PmlI CACGTG 1 cut(s) 180
PpsI GAGTC 2 cut(s) 89, 471
Ppu21I YACGTR 2 cut(s) 180, 436
Psp6I CCWGG 2 cut(s) 100, 478
PspCI CACGTG 1 cut(s) 180
PspGI CCWGG 2 cut(s) 100, 478
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 1 cut(s) 367
PsuI RGATCY 1 cut(s) 302
RsaI GTAC 1 cut(s) 656
RsaNI GTAC 1 cut(s) 655
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 5 cut(s) 126, 231, 302, 423, 499
Sau96I GGNCC 1 cut(s) 367
SchI GAGTC 2 cut(s) 89, 472
ScrFI CCNGG 4 cut(s) 102, 346, 405, 480
SduI GDGCHC 1 cut(s) 403
SfaNI GCATC 1 cut(s) 154
SinI GGWCC 1 cut(s) 367
Sse9I AATT 1 cut(s) 15
SseBI AGGCCT 1 cut(s) 478
SsiI CCGC 6 cut(s) 132, 299, 428, 449, 519, 566
SspMI CTAG 1 cut(s) 522
StuI AGGCCT 1 cut(s) 478
StyD4I CCNGG 4 cut(s) 100, 344, 403, 478
TaaI ACNGT 2 cut(s) 254, 389
TaiI ACGT 4 cut(s) 182, 225, 438, 636
TaqI TCGA 2 cut(s) 81, 417
TasI AATT 1 cut(s) 15
TatI WGTACW 1 cut(s) 654
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 3 cut(s) 64, 162, 386
TseFI GTSAC 3 cut(s) 8, 514, 590
Tsp45I GTSAC 3 cut(s) 8, 514, 590
TspDTI ATGAA 1 cut(s) 232
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 3 cut(s) 64, 162, 386
VpaK11BI GGWCC 1 cut(s) 367
XapI RAATTY 1 cut(s) 15
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.