AT2G15220

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003578
Physical Location & Seq
Forward (+)
6608561 .. 6609681
1121 bp
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UTR
Exon/CDS
Intron
AT2G15220.1

Sequence Viewer

Length: 678 bp
ATGACGTTTCACAAAATCTTTTTTGTAATCTCTCTGATGCTCGTTGTCTCATTAGTTAATGCTGTTGACTACTCGGTCGTCGACAATTCCGGTGACTCTACCGGAGGAAGGAGATTCCGGGGAGAGATCGGTGGCATAAGCTACGGCACACAGACACTAAGATCTGCGACAGACTTTGTGTGGCGTTTGTTCCAACAAACCAACCCTTCAGACAGAAAGTCAGTTACAAAGATCACACTGTTCATGGAGAACGGTGACGGAGTAGCGTACAACTCTGCAAACGAGATACATTTCAACGTGGGATATCTCGCGGGTGTATCGGGAGATGTAAAGAGGGAATTTACCGGTGTAGTTTATCATGAGGTGGTCCATTCTTGGCAGTGGAACGGTGCGGGTCGGGCTCCGGGTGGGCTTATCGAAGGGATAGCGGATTACGTGAGGCTGAAAGCGGGTTACGCTCCAAGTCATTGGGTCGGGCCTGGTCGTGGTGATAGGTGGGATCAAGGTTATGACGTTACCGCGAGGTTCTTGGATTATTGTAACGGTTTGAGGAATGGGTTTGTGGCCGAGCTGAACAAGAAGATGAGGAATGGTTATAGTGATGGCTTCTTCGTTGATTTGCTTGGGAAAGACGTGAATCAATTATGGAGAGAGTACAAGGCCAAGTATGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

225

Amino Acids

25.16

Weight (kDa)

8.56

Isoelectric Point (pI)

21.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 20 - 219 2.7e-78 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 81
AccII CGCG 2 cut(s) 311, 521
AciI CCGC 5 cut(s) 311, 392, 428, 449, 519
AclWI GGATC 1 cut(s) 507
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 2 cut(s) 269, 656
AfiI CCNNNNNNNGG 2 cut(s) 108, 485
AgeI ACCGGT 1 cut(s) 344
AgsI TTSAA 1 cut(s) 295
AhdI GACNNNNNGTC 1 cut(s) 217
AjiI CACGTC 1 cut(s) 634
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 2 cut(s) 141, 571
AluI AGCT 2 cut(s) 141, 571
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 507
AoxI GGCC 3 cut(s) 476, 564, 660
ApoI RAATTY 1 cut(s) 338
AsiGI ACCGGT 1 cut(s) 344
AspS9I GGNCC 2 cut(s) 367, 476
AsuC2I CCSGG 2 cut(s) 119, 405
AsuHPI GGTGA 3 cut(s) 104, 266, 500
AvaII GGWCC 1 cut(s) 367
BanII GRGCYC 1 cut(s) 403
BccI CCATC 1 cut(s) 596
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 480
BcnI CCSGG 2 cut(s) 119, 405
BcoDI GTCTC 1 cut(s) 52
BglII AGATCT 1 cut(s) 161
Bme1390I CCNGG 3 cut(s) 119, 405, 480
Bme18I GGWCC 1 cut(s) 367
BmeRI GACNNNNNGTC 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 634
BmgT120I GGNCC 2 cut(s) 367, 476
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 3 cut(s) 119, 405, 480
BmsI GCATC 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 119, 405
BsaAI YACGTR 1 cut(s) 436
BsaJI CCNNGG 1 cut(s) 118
BsaWI WCCGGW 3 cut(s) 89, 101, 344
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 485
Bse118I RCCGGY 1 cut(s) 344
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 1 cut(s) 118
BseLI CCNNNNNNNGG 2 cut(s) 108, 485
Bsh1236I CGCG 2 cut(s) 311, 521
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 3 cut(s) 478, 566, 662
BshTI ACCGGT 1 cut(s) 344
BsiEI CGRYCG 1 cut(s) 78
BsiSI CCGG 5 cut(s) 90, 102, 118, 345, 404
BslI CCNNNNNNNGG 2 cut(s) 108, 485
BsmAI GTCTC 1 cut(s) 52
BsnI GGCC 3 cut(s) 478, 566, 662
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 4 cut(s) 126, 161, 231, 499
BspACI CCGC 5 cut(s) 311, 392, 428, 449, 519
BspANI GGCC 3 cut(s) 478, 566, 662
BspFNI CGCG 2 cut(s) 311, 521
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 1 cut(s) 507
BsrFI RCCGGY 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 4 cut(s) 126, 161, 231, 499
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 4 cut(s) 240, 254, 389, 545
BstBAI YACGTR 1 cut(s) 436
BstDEI CTNAG 1 cut(s) 158
BstFNI CGCG 2 cut(s) 311, 521
BstKTI GATC 4 cut(s) 129, 164, 234, 502
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 4 cut(s) 126, 161, 231, 499
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 398, 455
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 3 cut(s) 117, 403, 478
BstUI CGCG 2 cut(s) 311, 521
BstX2I RGATCY 1 cut(s) 161
BstXI CCANNNNNNTGG 1 cut(s) 468
BstYI RGATCY 1 cut(s) 161
BsuRI GGCC 3 cut(s) 478, 566, 662
BtrI CACGTC 1 cut(s) 634
BtsI GCAGTG 1 cut(s) 386
BtsIMutI CAGTG 2 cut(s) 236, 386
CciI TCATGA 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 367, 476
Csp6I GTAC 2 cut(s) 268, 655
CspAI ACCGGT 1 cut(s) 344
CviAII CATG 2 cut(s) 244, 359
CviJI RGCY 9 cut(s) 141, 401, 412, 442, 478, 566, 571, 606, 662
CviKI_1 RGCY 9 cut(s) 141, 401, 412, 442, 478, 566, 571, 606, 662
CviQI GTAC 2 cut(s) 268, 655
DdeI CTNAG 1 cut(s) 158
DpnI GATC 4 cut(s) 128, 163, 233, 501
DpnII GATC 4 cut(s) 126, 161, 231, 499
DrdI GACNNNNNNGTC 1 cut(s) 74
DriI GACNNNNNGTC 1 cut(s) 217
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 564
Eam1105I GACNNNNNGTC 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 403
Eco32I GATATC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 478
EcoRV GATATC 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 403
FaeI CATG 2 cut(s) 247, 362
FaiI YATR 7 cut(s) 137, 245, 360, 510, 597, 646, 669
FatI CATG 2 cut(s) 243, 358
FauI CCCGC 3 cut(s) 304, 385, 442
FblI GTMKAC 1 cut(s) 81
FriOI GRGCYC 1 cut(s) 403
HaeIII GGCC 3 cut(s) 478, 566, 662
HapII CCGG 5 cut(s) 90, 102, 118, 345, 404
Hin1II CATG 2 cut(s) 247, 362
HincII GTYRAC 2 cut(s) 67, 82
HindII GTYRAC 2 cut(s) 67, 82
HinfI GANTC 3 cut(s) 95, 114, 637
HpaII CCGG 5 cut(s) 90, 102, 118, 345, 404
HphI GGTGA 3 cut(s) 104, 266, 500
Hpy166II GTNNAC 2 cut(s) 67, 82
Hpy188I TCNGA 2 cut(s) 36, 211
Hpy188III TCNNGA 2 cut(s) 321, 359
Hpy8I GTNNAC 2 cut(s) 67, 82
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 3 cut(s) 102, 216, 413
HpyCH4III ACNGT 4 cut(s) 240, 254, 389, 545
HpyCH4IV ACGT 5 cut(s) 5, 297, 435, 513, 633
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 455
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 5 cut(s) 5, 297, 435, 513, 633
Hsp92II CATG 2 cut(s) 247, 362
Kzo9I GATC 4 cut(s) 126, 161, 231, 499
LmnI GCTCC 2 cut(s) 406, 463
LpnPI CCDG 7 cut(s) 103, 115, 131, 358, 417, 465, 492
LweI GCATC 1 cut(s) 27
MaeII ACGT 5 cut(s) 5, 297, 435, 513, 633
MaeIII GTNAC 6 cut(s) 92, 223, 254, 452, 514, 539
MalI GATC 4 cut(s) 128, 163, 233, 501
MboI GATC 4 cut(s) 126, 161, 231, 499
MboII GAAGA 2 cut(s) 592, 601
MflI RGATCY 1 cut(s) 161
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 3 cut(s) 85, 338, 641
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 7 cut(s) 98, 327, 355, 432, 516, 543, 579
MseI TTAA 1 cut(s) 57
MspI CCGG 5 cut(s) 90, 102, 118, 345, 404
MspR9I CCNGG 3 cut(s) 119, 405, 480
MvaI CCWGG 1 cut(s) 480
MvnI CGCG 2 cut(s) 311, 521
MwoI GCNNNNNNNGC 2 cut(s) 398, 455
NciI CCSGG 2 cut(s) 119, 405
NdeII GATC 4 cut(s) 126, 161, 231, 499
NlaIII CATG 2 cut(s) 247, 362
NlaIV GGNNCC 1 cut(s) 402
NmeAIII GCCGAG 1 cut(s) 592
NmuCI GTSAC 2 cut(s) 92, 254
PagI TCATGA 1 cut(s) 358
PfeI GAWTC 2 cut(s) 114, 637
PinAI ACCGGT 1 cut(s) 344
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 2 cut(s) 367, 476
PsuI RGATCY 1 cut(s) 161
RsaI GTAC 2 cut(s) 269, 656
RsaNI GTAC 2 cut(s) 268, 655
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 4 cut(s) 126, 161, 231, 499
Sau96I GGNCC 2 cut(s) 367, 476
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 3 cut(s) 119, 405, 480
SduI GDGCHC 1 cut(s) 403
SfaNI GCATC 1 cut(s) 27
SinI GGWCC 1 cut(s) 367
Sse9I AATT 3 cut(s) 85, 338, 641
SsiI CCGC 5 cut(s) 311, 392, 428, 449, 519
StyD4I CCNGG 3 cut(s) 117, 403, 478
TaaI ACNGT 4 cut(s) 240, 254, 389, 545
TaiI ACGT 5 cut(s) 8, 300, 438, 516, 636
TaqI TCGA 2 cut(s) 81, 417
TaqII GACCGA 1 cut(s) 64
TasI AATT 3 cut(s) 85, 338, 641
TatI WGTACW 1 cut(s) 654
TfiI GAWTC 2 cut(s) 114, 637
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 2 cut(s) 243, 386
TseFI GTSAC 2 cut(s) 92, 254
Tsp45I GTSAC 2 cut(s) 92, 254
TspDTI ATGAA 1 cut(s) 232
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 2 cut(s) 243, 386
VpaK11BI GGWCC 1 cut(s) 367
XapI RAATTY 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.