Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003578

Physical Location & Seq

Genomic Coordinates Reverse (-)

15646783 .. 15647466

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G136100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTCACCCTATCTGTTTCCTCTCCTTGCTCCTAATACTAGCCGCAGCGACCCTTCGTGGCACCCATGCAGTCGACTACGTCGTCACCAACAACGCTGGAACAAGCCCTGGGGGCGTCCGCTTCAACAACGACATCGGAGCTGAGTACAGCAGGCAAACTCTGATATCCGCCGCCGACTTCATCTGGAGGGTATTCCAGCAAAACGCAGCCGCAGATAGGAAGAGCGTGGACAAAGTCAGCTTGATCGTTGAAAACATGGACGGCGTCGCATTTGCTAGGAACAATGAGATCCACGTCAGCGCCGGCTACATAGCTGGCTACGCAGGCGATGTGAAGAAGGAGATCACCGGTGTGCTTTATCACGAGTCAACGCACGTGTGGCAATGGAATGGGAACGATCAAGCCCCAGGGGGTTTGATTGAAGGCATTGCTGATTACGTGAGGCTCAAAGCAGGGTTTGCGCCAGGCCATTGGGTTCAGCCAGGTCAGGGGAACAAGTGGGACCAGGGGTATGATGTCACTGCTAGGTTTTTGGACTATTTGAATGGCCTGAGAAATGGGTTTGTGGCAGAATTGAATAAGAAATTGAGGAGTGGTTATAGTCCTAATTATTTTGTTGATTTGCTGGGGAAGAACGTTGATCAGCTCTGGACTGAGTACAAGGCCAAGTATGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

228

Amino Acids

25.03

Weight (kDa)

6.59

Isoelectric Point (pI)

22.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15130 AT2G15130 AT2G15170 AT2G15220
fragaria_vesca	FvH4_2g05020 FvH4_2g05030
malus_domestica	MD05G1090800.v1.1 MD10G1098800.v1.1 MD10G1147400.v1.1
prunus_persica	Prupe.8G136100_v2.0.a1 Prupe.8G136200_v2.0.a1
pyrus_communis	pycom05g08990 pycom05g09020
rosa_chinensis	RchiOBHm_Chr6g0254831
rosa_laevigata	RLG00000014886 RLG00000014887
rosa_multiflora	Rmu_co8056514.1_g000001 Rmu_sc0000016.1_g000002 Rmu_sc0000016.1_g000005 Rmu_sc0010925.1_g000001 Rmu_sc0010925.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210500 Rroxscaffold_7G00210510
rosa_rugosa	Rorug05G0554900 Rorug05G0555300
rosa_samantha	Rh6AG072200 Rh6AG072300 Rh6BG064400 Rh6BG064500 Rh6CG063700 Rh6CG064300 Rh6CG064400 Rh6DG060800 Rh6DG061400
rosa_wichuraiana	Rw6G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	75
AciI	CCGC	5 cut(s)	45, 121, 171, 174, 213
AclI	AACGTT	1 cut(s)	639
AclWI	GGATC	1 cut(s)	286
AcvI	CACGTG	1 cut(s)	379
AcyI	GRCGYC	2 cut(s)	117, 267
AfaI	GTAC	2 cut(s)	149, 662
AfiI	CCNNNNNNNGG	2 cut(s)	219, 491
AflIII	ACRYGT	1 cut(s)	378
AgeI	ACCGGT	1 cut(s)	350
AgsI	TTSAA	5 cut(s)	127, 254, 425, 547, 580
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	5 cut(s)	109, 409, 466, 484, 507
AleI	CACNNNNGTG	1 cut(s)	353
AluBI	AGCT	4 cut(s)	143, 243, 317, 649
AluI	AGCT	4 cut(s)	143, 243, 317, 649
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	3 cut(s)	469, 550, 666
ApeKI	GCWGC	2 cut(s)	47, 209
AsiGI	ACCGGT	1 cut(s)	350
AspLEI	GCGC	2 cut(s)	305, 466
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	2 cut(s)	79, 340
AvaII	GGWCC	1 cut(s)	505
BanI	GGYRCC	1 cut(s)	62
BauI	CACGAG	1 cut(s)	365
BbrPI	CACGTG	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	59, 221
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	5 cut(s)	111, 411, 468, 486, 509
BclI	TGATCA	1 cut(s)	643
BfaI	CTAG	3 cut(s)	41, 279, 528
BfoI	RGCGCY	1 cut(s)	306
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	5 cut(s)	45, 48, 174, 210, 213
BlsI	GCNGC	5 cut(s)	46, 49, 175, 211, 214
Bme1390I	CCNGG	5 cut(s)	111, 411, 468, 486, 509
Bme18I	GGWCC	1 cut(s)	505
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	2 cut(s)	64, 506
BmrFI	CCNGG	5 cut(s)	111, 411, 468, 486, 509
BpmI	CTGGAG	1 cut(s)	208
BsaAI	YACGTR	2 cut(s)	379, 442
BsaHI	GRCGYC	2 cut(s)	117, 267
BsaJI	CCNNGG	5 cut(s)	109, 110, 409, 410, 508
BsaWI	WCCGGW	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 491
Bse118I	RCCGGY	2 cut(s)	305, 350
Bse3DI	GCAATG	2 cut(s)	392, 429
BseBI	CCWGG	5 cut(s)	111, 411, 468, 486, 509
BseDI	CCNNGG	5 cut(s)	109, 110, 409, 410, 508
BseLI	CCNNNNNNNGG	2 cut(s)	219, 491
BseMI	GCAATG	2 cut(s)	392, 429
BseMII	CTCAG	3 cut(s)	135, 545, 648
BseRI	GAGGAG	1 cut(s)	607
BseXI	GCAGC	2 cut(s)	59, 221
BseYI	CCCAGC	1 cut(s)	628
BshFI	GGCC	3 cut(s)	471, 552, 668
BshNI	GGYRCC	1 cut(s)	62
BshTI	ACCGGT	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	306, 351
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	2 cut(s)	219, 491
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	3 cut(s)	471, 552, 668
Bsp143I	GATC	5 cut(s)	246, 291, 345, 400, 643
BspACI	CCGC	5 cut(s)	45, 121, 171, 174, 213
BspANI	GGCC	3 cut(s)	471, 552, 668
BspCNI	CTCAG	3 cut(s)	136, 546, 649
BspLI	GGNNCC	2 cut(s)	64, 506
BspPI	GGATC	1 cut(s)	286
BspQI	GCTCTTC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	62
BsrDI	GCAATG	2 cut(s)	392, 429
BsrFI	RCCGGY	2 cut(s)	305, 350
BssAI	RCCGGY	2 cut(s)	305, 350
BssECI	CCNNGG	5 cut(s)	109, 110, 409, 410, 508
BssMI	GATC	5 cut(s)	246, 291, 345, 400, 643
BssNI	GRCGYC	2 cut(s)	117, 267
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	5 cut(s)	111, 411, 468, 486, 509
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	2 cut(s)	117, 267
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstBAI	YACGTR	2 cut(s)	379, 442
BstC8I	GCNNGC	4 cut(s)	155, 307, 319, 328
BstDEI	CTNAG	3 cut(s)	144, 554, 657
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	2 cut(s)	305, 466
BstKTI	GATC	5 cut(s)	249, 294, 348, 403, 646
BstMBI	GATC	5 cut(s)	246, 291, 345, 400, 643
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 323, 327, 382, 461
BstNI	CCWGG	5 cut(s)	111, 411, 468, 486, 509
BstSCI	CCNGG	5 cut(s)	109, 409, 466, 484, 507
BstV1I	GCAGC	2 cut(s)	59, 221
BstX2I	RGATCY	1 cut(s)	291
BstXI	CCANNNNNNTGG	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	3 cut(s)	471, 552, 668
BtgZI	GCGATG	1 cut(s)	345
BtrI	CACGTC	1 cut(s)	298
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	4 cut(s)	155, 307, 319, 328
CfoI	GCGC	2 cut(s)	305, 466
Cfr10I	RCCGGY	2 cut(s)	305, 350
Cfr13I	GGNCC	1 cut(s)	505
CseI	GACGC	2 cut(s)	106, 256
Csp6I	GTAC	2 cut(s)	148, 661
CspAI	ACCGGT	1 cut(s)	350
CviAII	CATG	2 cut(s)	68, 259
CviQI	GTAC	2 cut(s)	148, 661
DdeI	CTNAG	3 cut(s)	144, 554, 657
DpnI	GATC	5 cut(s)	248, 293, 347, 402, 645
DpnII	GATC	5 cut(s)	246, 291, 345, 400, 643
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	505
Eco72I	CACGTG	1 cut(s)	379
EcoRII	CCWGG	5 cut(s)	109, 409, 466, 484, 507
EcoRV	GATATC	1 cut(s)	168
FaeI	CATG	2 cut(s)	71, 262
FaiI	YATR	6 cut(s)	69, 260, 314, 516, 603, 675
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	2 cut(s)	67, 258
FbaI	TGATCA	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	5 cut(s)	45, 48, 174, 210, 213
Fsp4HI	GCNGC	5 cut(s)	45, 48, 174, 210, 213
FspBI	CTAG	3 cut(s)	41, 279, 528
GlaI	GCGC	2 cut(s)	304, 465
GluI	GCNGC	5 cut(s)	45, 48, 174, 210, 213
GsaI	CCCAGC	1 cut(s)	632
GsuI	CTGGAG	1 cut(s)	208
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	3 cut(s)	471, 552, 668
HapII	CCGG	2 cut(s)	306, 351
HgaI	GACGC	2 cut(s)	106, 256
HhaI	GCGC	2 cut(s)	305, 466
Hin1I	GRCGYC	2 cut(s)	117, 267
Hin1II	CATG	2 cut(s)	71, 262
Hin6I	GCGC	2 cut(s)	303, 464
HinP1I	GCGC	2 cut(s)	303, 464
HincII	GTYRAC	2 cut(s)	76, 372
HindII	GTYRAC	2 cut(s)	76, 372
HinfI	GANTC	1 cut(s)	368
HpaII	CCGG	2 cut(s)	306, 351
HphI	GGTGA	2 cut(s)	79, 340
Hpy166II	GTNNAC	3 cut(s)	76, 232, 372
Hpy188I	TCNGA	2 cut(s)	140, 165
Hpy188III	TCNNGA	3 cut(s)	187, 365, 652
Hpy8I	GTNNAC	3 cut(s)	76, 232, 372
Hpy99I	CGWCG	2 cut(s)	86, 272
HpyAV	CCTTC	3 cut(s)	65, 334, 419
HpyCH4IV	ACGT	5 cut(s)	81, 297, 378, 441, 639
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 323, 327, 382, 461
HpyF3I	CTNAG	3 cut(s)	144, 554, 657
HpySE526I	ACGT	5 cut(s)	81, 297, 378, 441, 639
Hsp92I	GRCGYC	2 cut(s)	117, 267
Hsp92II	CATG	2 cut(s)	71, 262
HspAI	GCGC	2 cut(s)	303, 464
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	5 cut(s)	246, 291, 345, 400, 643
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	2 cut(s)	36, 140
Lsp1109I	GCAGC	2 cut(s)	59, 221
MaeI	CTAG	3 cut(s)	41, 279, 528
MaeII	ACGT	5 cut(s)	81, 297, 378, 441, 639
MaeIII	GTNAC	2 cut(s)	85, 520
MalI	GATC	5 cut(s)	248, 293, 347, 402, 645
MboI	GATC	5 cut(s)	246, 291, 345, 400, 643
MboII	GAAGA	3 cut(s)	235, 349, 646
MflI	RGATCY	1 cut(s)	291
MluCI	AATT	3 cut(s)	575, 587, 610
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	4 cut(s)	32, 183, 438, 585
MroNI	GCCGGC	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	2 cut(s)	306, 351
MspR9I	CCNGG	5 cut(s)	111, 411, 468, 486, 509
MvaI	CCWGG	5 cut(s)	111, 411, 468, 486, 509
MwoI	GCNNNNNNNGC	5 cut(s)	114, 323, 327, 382, 461
NaeI	GCCGGC	1 cut(s)	307
NdeII	GATC	5 cut(s)	246, 291, 345, 400, 643
NgoMIV	GCCGGC	1 cut(s)	305
NlaIII	CATG	2 cut(s)	71, 262
NlaIV	GGNNCC	2 cut(s)	64, 506
NmuCI	GTSAC	2 cut(s)	85, 520
OliI	CACNNNNGTG	1 cut(s)	353
PasI	CCCWGGG	2 cut(s)	110, 410
PciSI	GCTCTTC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	307
PflFI	GACNNNGTC	3 cut(s)	80, 236, 266
PinAI	ACCGGT	1 cut(s)	350
PkrI	GCNGC	5 cut(s)	46, 49, 175, 211, 214
PleI	GAGTC	1 cut(s)	376
PmaCI	CACGTG	1 cut(s)	379
PmlI	CACGTG	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	376
Ppu21I	YACGTR	2 cut(s)	379, 442
Psp1406I	AACGTT	1 cut(s)	639
Psp6I	CCWGG	5 cut(s)	109, 409, 466, 484, 507
PspCI	CACGTG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	628
PspGI	CCWGG	5 cut(s)	109, 409, 466, 484, 507
PspN4I	GGNNCC	2 cut(s)	64, 506
PspPI	GGNCC	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	291
PsyI	GACNNNGTC	3 cut(s)	80, 236, 266
RsaI	GTAC	2 cut(s)	149, 662
RsaNI	GTAC	2 cut(s)	148, 661
RseI	CAYNNNNRTG	1 cut(s)	353
SalI	GTCGAC	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	218
SatI	GCNGC	5 cut(s)	45, 48, 174, 210, 213
Sau3AI	GATC	5 cut(s)	246, 291, 345, 400, 643
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	5 cut(s)	111, 411, 468, 486, 509
SgrAI	CRCCGGYG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	575, 587, 610
SsiI	CCGC	5 cut(s)	45, 121, 171, 174, 213
SspMI	CTAG	3 cut(s)	41, 279, 528
StyD4I	CCNGG	5 cut(s)	109, 409, 466, 484, 507
TaiI	ACGT	5 cut(s)	84, 300, 381, 444, 642
TaqI	TCGA	1 cut(s)	75
TasI	AATT	3 cut(s)	575, 587, 610
TatI	WGTACW	2 cut(s)	147, 660
TauI	GCSGC	3 cut(s)	47, 176, 215
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	2 cut(s)	85, 520
TseI	GCWGC	2 cut(s)	47, 209
Tsp45I	GTSAC	2 cut(s)	85, 520
TspDTI	ATGAA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	529
Tth111I	GACNNNGTC	3 cut(s)	80, 236, 266
VpaK11BI	GGWCC	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	3 cut(s)	41, 279, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.