Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000016.1

Orthogroup ID

OG0003578

Physical Location & Seq

Genomic Coordinates Forward (+)

6539 .. 7352

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000016.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atggctcaacactgtatttttctcctctcccttttgataacacttgcaggccttcacgccgcgcatgcagtcgactacacagtcaccaacaacgccgcatcaagcgccggtggcatccgattcaacaacgacatcggagcagactatagcttgcaaacactaagctctgcggccgacttcatatggaaagtcttccagcaaagcacagatgcggacagaaagagcgtagccaaagtcagcttgttcatcgacaacatggacggcgtggcgtacgctagcaacaacgagattcatgttagcgccagttacatagcaggctactcaggcgacgtgaagaaggagattacaggtgtgctttaccacgaatcgacccacatatggcagtggaatggaaatgatcaagccccaggtgggttgattgaaggaattgcagactttgtgaggttgagggctgggtatgcaccgagtcactgggttcaaccaggtgaaggggataagtgggaccagggttacgatgttactgctaggtttttggattactgtactagtttgaaagatgggtttgttgcagagttgaacaacaagttgaagactggttatagtgttaactactttgttgatattttggggaagaatgttgatcagctctgggctgattacaaggctaaatatggcaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

226

Amino Acids

24.85

Weight (kDa)

5.39

Isoelectric Point (pI)

20.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15130 AT2G15130 AT2G15170 AT2G15220
fragaria_vesca	FvH4_2g05020 FvH4_2g05030
malus_domestica	MD05G1090800.v1.1 MD10G1098800.v1.1 MD10G1147400.v1.1
prunus_persica	Prupe.8G136100_v2.0.a1 Prupe.8G136200_v2.0.a1
pyrus_communis	pycom05g08990 pycom05g09020
rosa_chinensis	RchiOBHm_Chr6g0254831
rosa_laevigata	RLG00000014886 RLG00000014887
rosa_multiflora	Rmu_co8056514.1_g000001 Rmu_sc0000016.1_g000002 Rmu_sc0000016.1_g000005 Rmu_sc0010925.1_g000001 Rmu_sc0010925.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210500 Rroxscaffold_7G00210510
rosa_rugosa	Rorug05G0554900 Rorug05G0555300
rosa_samantha	Rh6AG072200 Rh6AG072300 Rh6BG064400 Rh6BG064500 Rh6CG063700 Rh6CG064300 Rh6CG064400 Rh6DG060800 Rh6DG061400
rosa_wichuraiana	Rw6G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	62
AciI	CCGC	4 cut(s)	60, 96, 170, 212
AcoI	YGGCCR	1 cut(s)	171
AfaI	GTAC	2 cut(s)	272, 544
AfiI	CCNNNNNNNGG	3 cut(s)	378, 411, 488
AgsI	TTSAA	6 cut(s)	124, 422, 479, 553, 577, 589
AhlI	ACTAGT	1 cut(s)	545
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	3 cut(s)	406, 481, 504
AluBI	AGCT	4 cut(s)	150, 165, 240, 646
AluI	AGCT	4 cut(s)	150, 165, 240, 646
AoxI	GGCC	2 cut(s)	49, 171
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	3 cut(s)	64, 107, 302
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	76, 497
AsuNHI	GCTAGC	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	502
BbsI	GAAGAC	2 cut(s)	184, 596
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	1 cut(s)	277
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	3 cut(s)	408, 483, 506
BclI	TGATCA	2 cut(s)	397, 640
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	3 cut(s)	276, 525, 546
BfmI	CTRYAG	1 cut(s)	145
BfoI	RGCGCY	2 cut(s)	108, 303
BisI	GCNGC	3 cut(s)	60, 96, 171
BlsI	GCNGC	3 cut(s)	61, 97, 172
Bme1390I	CCNGG	3 cut(s)	408, 483, 506
Bme18I	GGWCC	1 cut(s)	502
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	3 cut(s)	408, 483, 506
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	3 cut(s)	107, 123, 199
BmtI	GCTAGC	1 cut(s)	279
BmuI	ACTGGG	1 cut(s)	481
BpiI	GAAGAC	2 cut(s)	184, 596
BsaJI	CCNNGG	2 cut(s)	406, 505
Bsc4I	CCNNNNNNNGG	3 cut(s)	378, 411, 488
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	3 cut(s)	303, 476, 598
BseBI	CCWGG	3 cut(s)	408, 483, 506
BseDI	CCNNGG	2 cut(s)	406, 505
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	378, 411, 488
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	3 cut(s)	303, 476, 598
BseRI	GAGGAG	1 cut(s)	14
BseX3I	CGGCCG	1 cut(s)	171
BseYI	CCCAGC	1 cut(s)	452
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	51, 173
BsiEI	CGRYCG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	108
BsiWI	CGTACG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	3 cut(s)	378, 411, 488
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	51, 173
Bsp143I	GATC	2 cut(s)	397, 640
BspACI	CCGC	4 cut(s)	60, 96, 170, 212
BspANI	GGCC	2 cut(s)	51, 173
BspCNI	CTCAG	1 cut(s)	335
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	503
BspOI	GCTAGC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	3 cut(s)	303, 476, 598
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	406, 505
BssMI	GATC	2 cut(s)	397, 640
Bst2UI	CCWGG	3 cut(s)	408, 483, 506
Bst4CI	ACNGT	3 cut(s)	14, 82, 542
BstC8I	GCNNGC	5 cut(s)	49, 66, 152, 277, 316
BstDEI	CTNAG	2 cut(s)	161, 322
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	62
BstH2I	RGCGCY	2 cut(s)	108, 303
BstHHI	GCGC	3 cut(s)	64, 107, 302
BstKTI	GATC	2 cut(s)	400, 643
BstMBI	GATC	2 cut(s)	397, 640
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 104, 111, 324, 458
BstNI	CCWGG	3 cut(s)	408, 483, 506
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	3 cut(s)	406, 481, 504
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	62
BstV2I	GAAGAC	2 cut(s)	184, 596
BstZI	CGGCCG	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	51, 173
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	3 cut(s)	10, 389, 469
Cac8I	GCNNGC	5 cut(s)	49, 66, 152, 277, 316
CfoI	GCGC	3 cut(s)	64, 107, 302
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	502
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	271, 543
CviAII	CATG	3 cut(s)	65, 256, 293
CviQI	GTAC	2 cut(s)	271, 543
DdeI	CTNAG	2 cut(s)	161, 322
DpnI	GATC	2 cut(s)	399, 642
DpnII	GATC	2 cut(s)	397, 640
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	171
EagI	CGGCCG	1 cut(s)	171
EclXI	CGGCCG	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	502
Eco52I	CGGCCG	1 cut(s)	171
EcoRII	CCWGG	3 cut(s)	406, 481, 504
FaeI	CATG	3 cut(s)	68, 259, 296
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	3 cut(s)	64, 255, 292
FauNDI	CATATG	2 cut(s)	182, 377
FbaI	TGATCA	2 cut(s)	397, 640
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	60, 96, 171
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	3 cut(s)	60, 96, 171
FspBI	CTAG	3 cut(s)	276, 525, 546
GlaI	GCGC	3 cut(s)	63, 106, 301
GluI	GCNGC	3 cut(s)	60, 96, 171
GsaI	CCCAGC	1 cut(s)	456
HaeII	RGCGCY	2 cut(s)	108, 303
HaeIII	GGCC	2 cut(s)	51, 173
HapII	CCGG	1 cut(s)	108
HhaI	GCGC	3 cut(s)	64, 107, 302
Hin1II	CATG	3 cut(s)	68, 259, 296
Hin6I	GCGC	3 cut(s)	62, 105, 300
HinP1I	GCGC	3 cut(s)	62, 105, 300
HincII	GTYRAC	2 cut(s)	73, 607
HindII	GTYRAC	2 cut(s)	73, 607
HinfI	GANTC	4 cut(s)	120, 289, 365, 466
HpaI	GTTAAC	1 cut(s)	607
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	76, 497
Hpy166II	GTNNAC	2 cut(s)	73, 607
Hpy188I	TCNGA	2 cut(s)	119, 137
Hpy8I	GTNNAC	2 cut(s)	73, 607
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	4 cut(s)	62, 331, 416, 482
HpyCH4III	ACNGT	3 cut(s)	14, 82, 542
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	6 cut(s)	47, 68, 154, 431, 461, 569
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 104, 111, 324, 458
HpyF3I	CTNAG	2 cut(s)	161, 322
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	68, 259, 296
HspAI	GCGC	3 cut(s)	62, 105, 300
Ksp22I	TGATCA	2 cut(s)	397, 640
KspAI	GTTAAC	1 cut(s)	607
Kzo9I	GATC	2 cut(s)	397, 640
LmnI	GCTCC	1 cut(s)	137
LweI	GCATC	3 cut(s)	107, 123, 199
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	3 cut(s)	276, 525, 546
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	5 cut(s)	82, 305, 467, 509, 517
MalI	GATC	2 cut(s)	399, 642
MboI	GATC	2 cut(s)	397, 640
MboII	GAAGA	4 cut(s)	184, 346, 601, 643
MluCI	AATT	1 cut(s)	426
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	3 cut(s)	35, 435, 441
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	1 cut(s)	606
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	3 cut(s)	408, 483, 506
MvaI	CCWGG	3 cut(s)	408, 483, 506
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	5 cut(s)	65, 104, 111, 324, 458
NdeI	CATATG	2 cut(s)	182, 377
NdeII	GATC	2 cut(s)	397, 640
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	3 cut(s)	68, 259, 296
NlaIV	GGNNCC	1 cut(s)	503
NmuCI	GTSAC	2 cut(s)	82, 467
NspI	RCATGY	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	3 cut(s)	120, 289, 365
Pfl23II	CGTACG	1 cut(s)	270
PkrI	GCNGC	3 cut(s)	61, 97, 172
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
Psp6I	CCWGG	3 cut(s)	406, 481, 504
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	3 cut(s)	406, 481, 504
PspLI	CGTACG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	503
PspPI	GGNCC	1 cut(s)	502
RsaI	GTAC	2 cut(s)	272, 544
RsaNI	GTAC	2 cut(s)	271, 543
SalI	GTCGAC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	3 cut(s)	60, 96, 171
Sau3AI	GATC	2 cut(s)	397, 640
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	3 cut(s)	408, 483, 506
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	3 cut(s)	107, 123, 199
SfcI	CTRYAG	1 cut(s)	145
SgrAI	CRCCGGYG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	502
SpeI	ACTAGT	1 cut(s)	545
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	1 cut(s)	426
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	4 cut(s)	60, 96, 170, 212
SspMI	CTAG	3 cut(s)	276, 525, 546
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	3 cut(s)	406, 481, 504
TaaI	ACNGT	3 cut(s)	14, 82, 542
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	3 cut(s)	72, 249, 368
TasI	AATT	1 cut(s)	426
TatI	WGTACW	1 cut(s)	542
TauI	GCSGC	3 cut(s)	62, 98, 173
TfiI	GAWTC	3 cut(s)	120, 289, 365
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	3 cut(s)	17, 389, 476
TseFI	GTSAC	2 cut(s)	82, 467
Tsp45I	GTSAC	2 cut(s)	82, 467
TspDTI	ATGAA	3 cut(s)	169, 235, 281
TspRI	CASTG	3 cut(s)	17, 389, 476
VpaK11BI	GGWCC	1 cut(s)	502
XceI	RCATGY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	3 cut(s)	276, 525, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.