Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010925.1

Orthogroup ID

OG0003578

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 543

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010925.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 410 bp

acgctagcaacaacgagattcatgttagcgccagttacatagcaggctactcaggcgacgtgaagaaggagattacaggtgtgctttaccacgaatcgacgcacatatggcagtggaatggaaatggtcaagccccaggtgggttgattgaaggaattgcagactttgtgaggttgagggctgggtatgcaccgagtcactgggttcaaccaggtgaaggggataagtgggaccagggttacgatgttactgctaggtttttggattactgtactagtttgaaagatgggttcgttgcagagttgaacaacaagttgaagactggttatagtgttaactactttgttgatattttggggaagaatgttgatcagctctgggctgattacaaggctaaatatggcaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

135

Amino Acids

15.04

Weight (kDa)

5.75

Isoelectric Point (pI)

23.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15130 AT2G15130 AT2G15170 AT2G15220
fragaria_vesca	FvH4_2g05020 FvH4_2g05030
malus_domestica	MD05G1090800.v1.1 MD10G1098800.v1.1 MD10G1147400.v1.1
prunus_persica	Prupe.8G136100_v2.0.a1 Prupe.8G136200_v2.0.a1
pyrus_communis	pycom05g08990 pycom05g09020
rosa_chinensis	RchiOBHm_Chr6g0254831
rosa_laevigata	RLG00000014886 RLG00000014887
rosa_multiflora	Rmu_co8056514.1_g000001 Rmu_sc0000016.1_g000002 Rmu_sc0000016.1_g000005 Rmu_sc0010925.1_g000001 Rmu_sc0010925.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210500 Rroxscaffold_7G00210510
rosa_rugosa	Rorug05G0554900 Rorug05G0555300
rosa_samantha	Rh6AG072200 Rh6AG072300 Rh6BG064400 Rh6BG064500 Rh6CG063700 Rh6CG064300 Rh6CG064400 Rh6DG060800 Rh6DG061400
rosa_wichuraiana	Rw6G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	2 cut(s)	140, 217
AgsI	TTSAA	5 cut(s)	151, 208, 282, 306, 318
AhlI	ACTAGT	1 cut(s)	274
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	3 cut(s)	135, 210, 233
AluBI	AGCT	1 cut(s)	375
AluI	AGCT	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	226
AsuNHI	GCTAGC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	325
BccI	CCATC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BciT130I	CCWGG	3 cut(s)	137, 212, 235
BclI	TGATCA	1 cut(s)	369
BcuI	ACTAGT	1 cut(s)	274
BfaI	CTAG	3 cut(s)	5, 254, 275
BfoI	RGCGCY	1 cut(s)	32
Bme1390I	CCNGG	3 cut(s)	137, 212, 235
Bme18I	GGWCC	1 cut(s)	231
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	3 cut(s)	137, 212, 235
BmrI	ACTGGG	1 cut(s)	210
BmtI	GCTAGC	1 cut(s)	8
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	135, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 217
Bse1I	ACTGG	3 cut(s)	32, 205, 327
BseBI	CCWGG	3 cut(s)	137, 212, 235
BseDI	CCNNGG	2 cut(s)	135, 234
BseLI	CCNNNNNNNGG	2 cut(s)	140, 217
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	3 cut(s)	32, 205, 327
BseYI	CCCAGC	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	2 cut(s)	140, 217
BsmFI	GGGAC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	232
BspOI	GCTAGC	1 cut(s)	8
BsrI	ACTGG	3 cut(s)	32, 205, 327
BssECI	CCNNGG	2 cut(s)	135, 234
BssMI	GATC	1 cut(s)	369
Bst2UI	CCWGG	3 cut(s)	137, 212, 235
Bst4CI	ACNGT	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	6, 45
BstDEI	CTNAG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 108, 187
BstNI	CCWGG	3 cut(s)	137, 212, 235
BstSCI	CCNGG	3 cut(s)	135, 210, 233
BstV2I	GAAGAC	1 cut(s)	325
BtrI	CACGTC	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	2 cut(s)	118, 198
Cac8I	GCNNGC	2 cut(s)	6, 45
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	231
CseI	GACGC	1 cut(s)	108
CsiI	ACCWGGT	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	6 cut(s)	47, 133, 181, 375, 382, 394
CviKI_1	RGCY	6 cut(s)	47, 133, 181, 375, 382, 394
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	231
EcoRII	CCWGG	3 cut(s)	135, 210, 233
FaeI	CATG	1 cut(s)	25
FaiI	YATR	7 cut(s)	23, 40, 106, 108, 188, 329, 401
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	21
FauNDI	CATATG	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	369
FspBI	CTAG	3 cut(s)	5, 254, 275
GlaI	GCGC	1 cut(s)	30
GsaI	CCCAGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	32
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	3 cut(s)	18, 94, 195
HpaI	GTTAAC	1 cut(s)	336
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	336
Hpy8I	GTNNAC	1 cut(s)	336
Hpy99I	CGWCG	2 cut(s)	61, 102
HpyAV	CCTTC	3 cut(s)	60, 145, 211
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	160, 190, 298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 108, 187
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	1 cut(s)	29
Ksp22I	TGATCA	1 cut(s)	369
KspAI	GTTAAC	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	369
MabI	ACCWGGT	1 cut(s)	210
MaeI	CTAG	3 cut(s)	5, 254, 275
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	4 cut(s)	34, 196, 238, 246
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	3 cut(s)	75, 330, 372
MluCI	AATT	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	204
MnlI	CCTC	2 cut(s)	164, 170
MseI	TTAA	1 cut(s)	335
MspR9I	CCNGG	3 cut(s)	137, 212, 235
MvaI	CCWGG	3 cut(s)	137, 212, 235
MwoI	GCNNNNNNNGC	3 cut(s)	53, 108, 187
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	1 cut(s)	369
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	18, 94
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Psp6I	CCWGG	3 cut(s)	135, 210, 233
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	3 cut(s)	135, 210, 233
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	231
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	335
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	3 cut(s)	137, 212, 235
SetI	ASST	7 cut(s)	62, 81, 141, 175, 216, 259, 377
SexAI	ACCWGGT	1 cut(s)	210
SinI	GGWCC	1 cut(s)	231
SpeI	ACTAGT	1 cut(s)	274
Sse9I	AATT	1 cut(s)	155
SspMI	CTAG	3 cut(s)	5, 254, 275
StyD4I	CCNGG	3 cut(s)	135, 210, 233
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	97
TasI	AATT	1 cut(s)	155
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	18, 94
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	2 cut(s)	118, 205
TseFI	GTSAC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	10
TspRI	CASTG	2 cut(s)	118, 205
VpaK11BI	GGWCC	1 cut(s)	231
XspI	CTAG	3 cut(s)	5, 254, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.