Rroxscaffold_7G00210510

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003578
Physical Location & Seq
Reverse (-)
61012670 .. 61013625
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210510.1

Sequence Viewer

Length: 684 bp
ATGGCTCAAAACTGTATTTTTCTCCTCTCCCTTCTGATAACACTTGCAGGCCTTCACGCCGCGCATGCAGTCGACTACACAGTCACCAACAATGCCGCATCAAGCGCCGGTGGCATCCGATTCAACAACGACATCGGAGCAGACTACAGCCTGCAAACCCTAACCTCTGCGGCCGACTTCATATGGAAAGTCTTCCAGCAAAGCACAGATGCGGATAGAAAGAGCGTAGCCAAAGTCAGCTTGTTCATCGACAACATGGACGGCGTGGCGTACGCTAGCAACAACGAGATTCATGTTAGCGCCAGTTACATAGCAGGCTACTCAGGCGACGTGAAGAAGGAGATAACAGGTGTGCTTTACCACGAATCGACGCACATATGGCAGTGGAATGGAAATAATGGTCAAGCCCCAGGTGGGTTGATTGAAGGAATTGCAGACTTTGTGAGGTTGAGGGCTGGGTATGCACCGAGTCACTGGGTTCAACCAGGTGAAGGGGATAAGTGGGACCAGGGTTATGATGTTACCGCTAGGTTTTTGGATTACTGTACTAGTTTGAAAGATGGGTTTGTTGCAGAGTTGAACAGCAAGTTGAAGACTGGTTATAGTGTTAACTACTTTGTTGATATTTTGGGGAAGAATGTTGATCAGCTCTGGGCTGATTACAAGGCTAAATATGGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

227

Amino Acids

24.87

Weight (kDa)

5.42

Isoelectric Point (pI)

18.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 23 - 221 6.6e-79 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 72
AccII CGCG 1 cut(s) 62
AciI CCGC 5 cut(s) 60, 96, 170, 212, 525
AcoI YGGCCR 1 cut(s) 171
AfaI GTAC 2 cut(s) 272, 547
AfiI CCNNNNNNNGG 2 cut(s) 414, 491
AgsI TTSAA 6 cut(s) 124, 425, 482, 556, 580, 592
AhlI ACTAGT 1 cut(s) 548
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 3 cut(s) 409, 484, 507
AluBI AGCT 2 cut(s) 240, 649
AluI AGCT 2 cut(s) 240, 649
AoxI GGCC 2 cut(s) 49, 171
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 3 cut(s) 64, 107, 302
AspS9I GGNCC 1 cut(s) 505
AsuHPI GGTGA 2 cut(s) 76, 500
AsuNHI GCTAGC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 505
BbsI GAAGAC 2 cut(s) 184, 599
BccI CCATC 1 cut(s) 554
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 3 cut(s) 411, 486, 509
BclI TGATCA 1 cut(s) 643
BcuI ACTAGT 1 cut(s) 548
BfaI CTAG 3 cut(s) 276, 528, 549
BfmI CTRYAG 1 cut(s) 145
BfoI RGCGCY 2 cut(s) 108, 303
BisI GCNGC 3 cut(s) 60, 96, 171
BlsI GCNGC 3 cut(s) 61, 97, 172
Bme1390I CCNGG 3 cut(s) 411, 486, 509
Bme18I GGWCC 1 cut(s) 505
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 505
BmiI GGNNCC 1 cut(s) 506
BmrFI CCNGG 3 cut(s) 411, 486, 509
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 3 cut(s) 107, 123, 199
BmtI GCTAGC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 484
BpiI GAAGAC 2 cut(s) 184, 599
BsaJI CCNNGG 2 cut(s) 409, 508
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 491
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 3 cut(s) 303, 479, 601
BseBI CCWGG 3 cut(s) 411, 486, 509
BseDI CCNNGG 2 cut(s) 409, 508
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 414, 491
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 3 cut(s) 303, 479, 601
BseRI GAGGAG 1 cut(s) 14
BseX3I CGGCCG 1 cut(s) 171
BseYI CCCAGC 1 cut(s) 455
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 51, 173
BsiEI CGRYCG 1 cut(s) 174
BsiSI CCGG 1 cut(s) 108
BsiWI CGTACG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 2 cut(s) 414, 491
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 2 cut(s) 51, 173
Bsp143I GATC 1 cut(s) 643
BspACI CCGC 5 cut(s) 60, 96, 170, 212, 525
BspANI GGCC 2 cut(s) 51, 173
BspCNI CTCAG 1 cut(s) 335
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 506
BspOI GCTAGC 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 3 cut(s) 303, 479, 601
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 409, 508
BssMI GATC 1 cut(s) 643
Bst2UI CCWGG 3 cut(s) 411, 486, 509
Bst4CI ACNGT 3 cut(s) 14, 82, 545
BstC8I GCNNGC 5 cut(s) 49, 66, 152, 277, 316
BstDEI CTNAG 1 cut(s) 322
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 62
BstH2I RGCGCY 2 cut(s) 108, 303
BstHHI GCGC 3 cut(s) 64, 107, 302
BstKTI GATC 1 cut(s) 646
BstMBI GATC 1 cut(s) 643
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 6 cut(s) 65, 104, 111, 324, 379, 461
BstNI CCWGG 3 cut(s) 411, 486, 509
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 3 cut(s) 409, 484, 507
BstSFI CTRYAG 1 cut(s) 145
BstUI CGCG 1 cut(s) 62
BstV2I GAAGAC 2 cut(s) 184, 599
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 51, 173
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 2 cut(s) 389, 472
Cac8I GCNNGC 5 cut(s) 49, 66, 152, 277, 316
CfoI GCGC 3 cut(s) 64, 107, 302
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 505
CseI GACGC 1 cut(s) 379
CsiI ACCWGGT 1 cut(s) 484
Csp6I GTAC 2 cut(s) 271, 546
CviAII CATG 3 cut(s) 65, 256, 293
CviQI GTAC 2 cut(s) 271, 546
DdeI CTNAG 1 cut(s) 322
DpnI GATC 1 cut(s) 645
DpnII GATC 1 cut(s) 643
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 171
EagI CGGCCG 1 cut(s) 171
EclXI CGGCCG 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 505
Eco52I CGGCCG 1 cut(s) 171
EcoRII CCWGG 3 cut(s) 409, 484, 507
FaeI CATG 3 cut(s) 68, 259, 296
FaqI GGGAC 1 cut(s) 518
FatI CATG 3 cut(s) 64, 255, 292
FauNDI CATATG 2 cut(s) 182, 377
FbaI TGATCA 1 cut(s) 643
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 60, 96, 171
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 60, 96, 171
FspBI CTAG 3 cut(s) 276, 528, 549
GlaI GCGC 3 cut(s) 63, 106, 301
GluI GCNGC 3 cut(s) 60, 96, 171
GsaI CCCAGC 1 cut(s) 459
HaeII RGCGCY 2 cut(s) 108, 303
HaeIII GGCC 2 cut(s) 51, 173
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 379
HhaI GCGC 3 cut(s) 64, 107, 302
Hin1II CATG 3 cut(s) 68, 259, 296
Hin6I GCGC 3 cut(s) 62, 105, 300
HinP1I GCGC 3 cut(s) 62, 105, 300
HincII GTYRAC 2 cut(s) 73, 610
HindII GTYRAC 2 cut(s) 73, 610
HinfI GANTC 4 cut(s) 120, 289, 365, 469
HpaI GTTAAC 1 cut(s) 610
HpaII CCGG 1 cut(s) 108
HphI GGTGA 2 cut(s) 76, 500
Hpy166II GTNNAC 2 cut(s) 73, 610
Hpy188I TCNGA 3 cut(s) 36, 119, 137
Hpy8I GTNNAC 2 cut(s) 73, 610
Hpy99I CGWCG 2 cut(s) 332, 373
HpyAV CCTTC 5 cut(s) 41, 62, 331, 419, 485
HpyCH4III ACNGT 3 cut(s) 14, 82, 545
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 6 cut(s) 47, 68, 154, 434, 464, 572
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 104, 111, 324, 379, 461
HpyF3I CTNAG 1 cut(s) 322
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 3 cut(s) 68, 259, 296
HspAI GCGC 3 cut(s) 62, 105, 300
Ksp22I TGATCA 1 cut(s) 643
KspAI GTTAAC 1 cut(s) 610
Kzo9I GATC 1 cut(s) 643
LmnI GCTCC 1 cut(s) 137
LweI GCATC 3 cut(s) 107, 123, 199
MabI ACCWGGT 1 cut(s) 484
MaeI CTAG 3 cut(s) 276, 528, 549
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 4 cut(s) 82, 305, 470, 520
MalI GATC 1 cut(s) 645
MboI GATC 1 cut(s) 643
MboII GAAGA 4 cut(s) 184, 346, 604, 646
MluCI AATT 1 cut(s) 429
MlyI GAGTC 1 cut(s) 478
MnlI CCTC 4 cut(s) 35, 175, 438, 444
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 1 cut(s) 609
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 3 cut(s) 411, 486, 509
MvaI CCWGG 3 cut(s) 411, 486, 509
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 6 cut(s) 65, 104, 111, 324, 379, 461
NdeI CATATG 2 cut(s) 182, 377
NdeII GATC 1 cut(s) 643
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 3 cut(s) 68, 259, 296
NlaIV GGNNCC 1 cut(s) 506
NmuCI GTSAC 2 cut(s) 82, 470
NspI RCATGY 1 cut(s) 68
PaeI GCATGC 1 cut(s) 68
PceI AGGCCT 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 3 cut(s) 120, 289, 365
Pfl23II CGTACG 1 cut(s) 270
PkrI GCNGC 3 cut(s) 61, 97, 172
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
Psp6I CCWGG 3 cut(s) 409, 484, 507
PspFI CCCAGC 1 cut(s) 455
PspGI CCWGG 3 cut(s) 409, 484, 507
PspLI CGTACG 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 506
PspPI GGNCC 1 cut(s) 505
RsaI GTAC 2 cut(s) 272, 547
RsaNI GTAC 2 cut(s) 271, 546
SalI GTCGAC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 609
SatI GCNGC 3 cut(s) 60, 96, 171
Sau3AI GATC 1 cut(s) 643
Sau96I GGNCC 1 cut(s) 505
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 3 cut(s) 411, 486, 509
SetI ASST 9 cut(s) 167, 242, 333, 352, 415, 449, 490, 533, 651
SexAI ACCWGGT 1 cut(s) 484
SfaNI GCATC 3 cut(s) 107, 123, 199
SfcI CTRYAG 1 cut(s) 145
SgrAI CRCCGGYG 1 cut(s) 107
SinI GGWCC 1 cut(s) 505
SpeI ACTAGT 1 cut(s) 548
SphI GCATGC 1 cut(s) 68
Sse9I AATT 1 cut(s) 429
SseBI AGGCCT 1 cut(s) 51
SsiI CCGC 5 cut(s) 60, 96, 170, 212, 525
SspMI CTAG 3 cut(s) 276, 528, 549
StuI AGGCCT 1 cut(s) 51
StyD4I CCNGG 3 cut(s) 409, 484, 507
TaaI ACNGT 3 cut(s) 14, 82, 545
TaiI ACGT 1 cut(s) 333
TaqI TCGA 3 cut(s) 72, 249, 368
TasI AATT 1 cut(s) 429
TatI WGTACW 1 cut(s) 545
TauI GCSGC 3 cut(s) 62, 98, 173
TfiI GAWTC 3 cut(s) 120, 289, 365
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TscAI CASTG 2 cut(s) 389, 479
TseFI GTSAC 2 cut(s) 82, 470
Tsp45I GTSAC 2 cut(s) 82, 470
TspDTI ATGAA 3 cut(s) 169, 235, 281
TspRI CASTG 2 cut(s) 389, 479
VpaK11BI GGWCC 1 cut(s) 505
XceI RCATGY 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 3 cut(s) 276, 528, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.