AT2G15170

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003578
Physical Location & Seq
Forward (+)
6587570 .. 6588321
752 bp
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UTR
Exon/CDS
Intron
AT2G15170.1

Sequence Viewer

Length: 309 bp
ATGGCTTGTCACGAAATCTTCCTTGTAATCTGTCTAATGCTCGCAGTCTCTATGGTCAATGCAGTTGACTTCTTTGTTGTCGACAATACTGGCGACTCTCCTGGAGGAAGGAAATTTCGAGATGAGATCGGCGGCGTCAGTTATGGCAAACAATCAGTGAGATCTGCAACAGACTTCACGTGGCGTTTGTTCCAACAAACTAACCCTTTAGACAGAAAGACCATTACAAACATCACACTCTTCATAGAGAATAGTAACAGCGTGGCCTACAACACGAACTTGGGAAAGGAGATACATTTTCAACGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

102

Amino Acids

11.51

Weight (kDa)

6.71

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 20 - 100 2.1e-14 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AciI CCGC 1 cut(s) 132
AcsI RAATTY 1 cut(s) 113
AcvI CACGTG 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 135
AgsI TTSAA 1 cut(s) 302
AjnI CCWGG 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 52
AoxI GGCC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 113
BbrPI CACGTG 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 1 cut(s) 307
BglII AGATCT 1 cut(s) 161
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 94
BshFI GGCC 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 52
BsnI GGCC 1 cut(s) 266
Bsp143I GATC 2 cut(s) 126, 161
BspACI CCGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 266
BsrI ACTGG 1 cut(s) 94
BssMI GATC 2 cut(s) 126, 161
BssNI GRCGYC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 245
BstACI GRCGYC 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 42
BstKTI GATC 2 cut(s) 129, 164
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 2 cut(s) 126, 161
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuRI GGCC 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 42
CseI GACGC 1 cut(s) 124
CviJI RGCY 2 cut(s) 5, 266
CviKI_1 RGCY 2 cut(s) 5, 266
DpnI GATC 2 cut(s) 128, 163
DpnII GATC 2 cut(s) 126, 161
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco72I CACGTG 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 100
FaiI YATR 3 cut(s) 53, 144, 245
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 133
FspBI CTAG 1 cut(s) 307
GluI GCNGC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 1 cut(s) 266
HgaI GACGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 135
HincII GTYRAC 2 cut(s) 67, 82
HindII GTYRAC 2 cut(s) 67, 82
HinfI GANTC 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 67, 82
Hpy188III TCNNGA 2 cut(s) 11, 119
Hpy8I GTNNAC 2 cut(s) 67, 82
HpyAV CCTTC 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 62, 167
HpySE526I ACGT 1 cut(s) 179
Hsp92I GRCGYC 1 cut(s) 135
Kzo9I GATC 2 cut(s) 126, 161
LpnPI CCDG 3 cut(s) 75, 87, 114
MaeI CTAG 1 cut(s) 307
MaeII ACGT 1 cut(s) 179
MaeIII GTNAC 2 cut(s) 8, 254
MalI GATC 2 cut(s) 128, 163
MboI GATC 2 cut(s) 126, 161
MboII GAAGA 2 cut(s) 10, 232
MflI RGATCY 1 cut(s) 161
MluCI AATT 1 cut(s) 113
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
NdeII GATC 2 cut(s) 126, 161
NmuCI GTSAC 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 1 cut(s) 134
PleI GAGTC 1 cut(s) 89
PmaCI CACGTG 1 cut(s) 180
PmlI CACGTG 1 cut(s) 180
PpsI GAGTC 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 100
PspCI CACGTG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 100
PsuI RGATCY 1 cut(s) 161
SalI GTCGAC 1 cut(s) 80
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 2 cut(s) 126, 161
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 102
SetI ASST 1 cut(s) 182
Sse9I AATT 1 cut(s) 113
SsiI CCGC 1 cut(s) 132
SspMI CTAG 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 100
TaiI ACGT 1 cut(s) 182
TaqI TCGA 2 cut(s) 81, 118
TasI AATT 1 cut(s) 113
TauI GCSGC 1 cut(s) 135
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 232
TspRI CASTG 1 cut(s) 162
XapI RAATTY 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.