FvH4_2g05030

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003578
Physical Location & Seq
Forward (+)
4083308 .. 4083767
460 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05030.t1

Sequence Viewer

Length: 366 bp
ATGAACGGTGTGGCGTATGCTAGCAACAACCAGATTCATGCTAGCGCCAGCTACATAGCAGGCTACTCAGGCGATGTGAAAAATGAGATTACGGGTGTGAAATACCATGAATCGACGCACATATGGCAGTGGAATGGGAATGGTCATGCCCCACGTGGTGGGTTGATTGAAAGAATTGTAGACTTTGTGAGGTTGAAGGCTGGGTATGCACCGAGTCACTTGGTTCAGCCAGGTCAGGGAGATAGGTGGGATCAGGGTTATGATGTTACCGCTAGGTTTTTGGATCACTGTACTAGTTCGAAAGCTGGGTTTGTTGCAGAGTTGAACAAGAAGTTGAAGACTGGCTATAGCACTGTTAAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

122

Amino Acids

13.29

Weight (kDa)

8.91

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 1 - 117 2.1e-44 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 158
AccI GTMKAC 1 cut(s) 180
AciI CCGC 1 cut(s) 270
AclWI GGATC 2 cut(s) 258, 291
AcvI CACGTG 1 cut(s) 155
AdeI CACNNNGTG 1 cut(s) 158
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 2 cut(s) 158, 236
AgsI TTSAA 4 cut(s) 170, 196, 325, 337
AhlI ACTAGT 1 cut(s) 293
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 2 cut(s) 51, 305
AluI AGCT 2 cut(s) 51, 305
AlwI GGATC 2 cut(s) 258, 291
AspLEI GCGC 1 cut(s) 47
AsuII TTCGAA 1 cut(s) 299
AsuNHI GCTAGC 2 cut(s) 20, 41
BbrPI CACGTG 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 231
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 4 cut(s) 21, 42, 273, 294
BfmI CTRYAG 1 cut(s) 346
BfoI RGCGCY 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 231
BmtI GCTAGC 2 cut(s) 24, 45
BpiI GAAGAC 1 cut(s) 344
Bpu14I TTCGAA 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 155
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 236
Bse1I ACTGG 1 cut(s) 346
BseBI CCWGG 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 158, 236
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 346
BseYI CCCAGC 2 cut(s) 200, 305
BslI CCNNNNNNNGG 2 cut(s) 158, 236
Bsp119I TTCGAA 1 cut(s) 299
Bsp143I GATC 2 cut(s) 250, 283
BspACI CCGC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 80
BspOI GCTAGC 2 cut(s) 24, 45
BspPI GGATC 2 cut(s) 258, 291
BspT104I TTCGAA 1 cut(s) 299
BsrI ACTGG 1 cut(s) 346
BssMI GATC 2 cut(s) 250, 283
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 3 cut(s) 8, 290, 355
BstBAI YACGTR 1 cut(s) 155
BstBI TTCGAA 1 cut(s) 299
BstC8I GCNNGC 4 cut(s) 22, 43, 49, 61
BstDEI CTNAG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 2 cut(s) 253, 286
BstMBI GATC 2 cut(s) 250, 283
BstMWI GCNNNNNNNGC 3 cut(s) 69, 124, 206
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 346
BstV2I GAAGAC 1 cut(s) 344
BtgZI GCGATG 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 3 cut(s) 134, 286, 351
Cac8I GCNNGC 4 cut(s) 22, 43, 49, 61
CfoI GCGC 1 cut(s) 47
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 291
CviAII CATG 3 cut(s) 38, 107, 146
CviJI RGCY 6 cut(s) 51, 63, 200, 229, 305, 345
CviKI_1 RGCY 6 cut(s) 51, 63, 200, 229, 305, 345
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 1 cut(s) 67
DpnI GATC 2 cut(s) 252, 285
DpnII GATC 2 cut(s) 250, 283
DraIII CACNNNGTG 1 cut(s) 158
Eco72I CACGTG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 229
FaeI CATG 3 cut(s) 41, 110, 149
FatI CATG 3 cut(s) 37, 106, 145
FauNDI CATATG 1 cut(s) 122
FblI GTMKAC 1 cut(s) 180
FspBI CTAG 4 cut(s) 21, 42, 273, 294
GlaI GCGC 1 cut(s) 46
GsaI CCCAGC 2 cut(s) 204, 309
HaeII RGCGCY 1 cut(s) 48
HgaI GACGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 47
Hin1II CATG 3 cut(s) 41, 110, 149
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 3 cut(s) 34, 110, 214
Hpy166II GTNNAC 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 3 cut(s) 8, 290, 355
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 209, 317
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 124, 206
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 3 cut(s) 41, 110, 149
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 2 cut(s) 250, 283
MaeI CTAG 4 cut(s) 21, 42, 273, 294
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 2 cut(s) 215, 265
MalI GATC 2 cut(s) 252, 285
MboI GATC 2 cut(s) 250, 283
MboII GAAGA 1 cut(s) 349
MluCI AATT 1 cut(s) 174
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 1 cut(s) 183
MseI TTAA 2 cut(s) 357, 364
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 69, 124, 206
NdeI CATATG 1 cut(s) 122
NdeII GATC 2 cut(s) 250, 283
NheI GCTAGC 2 cut(s) 20, 41
NlaIII CATG 3 cut(s) 41, 110, 149
NmuCI GTSAC 1 cut(s) 215
NspV TTCGAA 1 cut(s) 299
PfeI GAWTC 2 cut(s) 34, 110
PflMI CCANNNNNTGG 1 cut(s) 158
PleI GAGTC 1 cut(s) 222
PmaCI CACGTG 1 cut(s) 155
PmlI CACGTG 1 cut(s) 155
PpsI GAGTC 1 cut(s) 222
Ppu21I YACGTR 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 229
PspCI CACGTG 1 cut(s) 155
PspFI CCCAGC 2 cut(s) 200, 305
PspGI CCWGG 1 cut(s) 229
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 357, 364
Sau3AI GATC 2 cut(s) 250, 283
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 231
SetI ASST 7 cut(s) 53, 157, 194, 235, 248, 278, 307
SfcI CTRYAG 1 cut(s) 346
SfuI TTCGAA 1 cut(s) 299
SpeI ACTAGT 1 cut(s) 293
Sse9I AATT 1 cut(s) 174
SsiI CCGC 1 cut(s) 270
SspMI CTAG 4 cut(s) 21, 42, 273, 294
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 3 cut(s) 8, 290, 355
TaiI ACGT 1 cut(s) 157
TaqI TCGA 2 cut(s) 113, 299
TasI AATT 1 cut(s) 174
TatI WGTACW 1 cut(s) 290
TfiI GAWTC 2 cut(s) 34, 110
Tru1I TTAA 2 cut(s) 357, 364
Tru9I TTAA 2 cut(s) 357, 364
TscAI CASTG 3 cut(s) 134, 293, 358
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 3 cut(s) 17, 26, 123
TspRI CASTG 3 cut(s) 134, 293, 358
Van91I CCANNNNNTGG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 4 cut(s) 21, 42, 273, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.