Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000016.1

Orthogroup ID

OG0003578

Physical Location & Seq

Genomic Coordinates Forward (+)

17497 .. 18300

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000016.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atggctcaaaacaatttgtttctcctctcccttctcataacacttgcaggccttcatgctgcccatgcagtcgattacactgtcacaaacaacgccggatcaagcaccggggctgtccgatttaacagagacatcggagcagactacagcaagagaacccttatctccgcggccaatttcatatggaagatcttccagcaaagcgcagccgcagatagaaagagcgtagccaaagtcagcttgtttattgacaacatggacggggtggcgtatgctagcaacaaccagattcatgttagcgccagctacatagcaggctactccggcgacgtgaaaaaggagatcacgggtgtgctctaccacgaatcgacgcacatatggcagtggaatggcaatggtcaagccccaggtgggttgattgaaggaattgcagactttgtgaggttgaaggctgggtatgcaccgagtcactgggttaagccaggtcaaggggataggtgggatcagggttatgatgttactgctaggtttttggattactgtaatactttgaaagctgggtttgttgcagagttaaacaagaagttgaagactggttatagtgttaactactttgctgatattttgggaaagaatgttaatcagctctgggctgattacaaggctaagtatggcaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

226

Amino Acids

24.81

Weight (kDa)

9.13

Isoelectric Point (pI)

16.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15130 AT2G15130 AT2G15170 AT2G15220
fragaria_vesca	FvH4_2g05020 FvH4_2g05030
malus_domestica	MD05G1090800.v1.1 MD10G1098800.v1.1 MD10G1147400.v1.1
prunus_persica	Prupe.8G136100_v2.0.a1 Prupe.8G136200_v2.0.a1
pyrus_communis	pycom05g08990 pycom05g09020
rosa_chinensis	RchiOBHm_Chr6g0254831
rosa_laevigata	RLG00000014886 RLG00000014887
rosa_multiflora	Rmu_co8056514.1_g000001 Rmu_sc0000016.1_g000002 Rmu_sc0000016.1_g000005 Rmu_sc0010925.1_g000001 Rmu_sc0010925.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210500 Rroxscaffold_7G00210510
rosa_rugosa	Rorug05G0554900 Rorug05G0555300
rosa_samantha	Rh6AG072200 Rh6AG072300 Rh6BG064400 Rh6BG064500 Rh6CG063700 Rh6CG064300 Rh6CG064400 Rh6DG060800 Rh6DG061400
rosa_wichuraiana	Rw6G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	170
AciI	CCGC	3 cut(s)	168, 170, 210
AclWI	GGATC	2 cut(s)	106, 510
AcoI	YGGCCR	1 cut(s)	171
AfiI	CCNNNNNNNGG	2 cut(s)	411, 488
AgsI	TTSAA	4 cut(s)	422, 448, 553, 589
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	2 cut(s)	406, 481
AleI	CACNNNNGTG	1 cut(s)	350
AluBI	AGCT	4 cut(s)	240, 306, 557, 646
AluI	AGCT	4 cut(s)	240, 306, 557, 646
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	2 cut(s)	106, 510
AoxI	GGCC	2 cut(s)	49, 171
ApeKI	GCWGC	2 cut(s)	59, 206
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	2 cut(s)	206, 302
AsuC2I	CCSGG	1 cut(s)	109
AsuNHI	GCTAGC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	46, 218
BciT130I	CCWGG	2 cut(s)	408, 483
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	2 cut(s)	276, 525
BfmI	CTRYAG	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	303
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	4 cut(s)	60, 171, 207, 210
BlsI	GCNGC	4 cut(s)	61, 172, 208, 211
Bme1390I	CCNGG	3 cut(s)	109, 408, 483
BmgBI	CACGTC	1 cut(s)	331
BmrFI	CCNGG	3 cut(s)	109, 408, 483
BmrI	ACTGGG	1 cut(s)	481
BmtI	GCTAGC	1 cut(s)	279
BmuI	ACTGGG	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	109
BsaJI	CCNNGG	3 cut(s)	108, 168, 406
Bsc4I	CCNNNNNNNGG	2 cut(s)	411, 488
Bse1I	ACTGG	2 cut(s)	476, 598
Bse3DI	GCAATG	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	408, 483
BseDI	CCNNGG	3 cut(s)	108, 168, 406
BseLI	CCNNNNNNNGG	2 cut(s)	411, 488
BseMI	GCAATG	1 cut(s)	400
BseNI	ACTGG	2 cut(s)	476, 598
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	46, 218
BseYI	CCCAGC	2 cut(s)	452, 557
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	51, 173
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	3 cut(s)	96, 108, 324
BslI	CCNNNNNNNGG	2 cut(s)	411, 488
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	51, 173
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	98, 189, 342, 502
BspACI	CCGC	3 cut(s)	168, 170, 210
BspANI	GGCC	2 cut(s)	51, 173
BspFNI	CGCG	1 cut(s)	170
BspOI	GCTAGC	1 cut(s)	279
BspPI	GGATC	2 cut(s)	106, 510
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	476, 598
BssECI	CCNNGG	3 cut(s)	108, 168, 406
BssMI	GATC	4 cut(s)	98, 189, 342, 502
Bst2UI	CCWGG	2 cut(s)	408, 483
Bst4CI	ACNGT	2 cut(s)	82, 542
BstC8I	GCNNGC	4 cut(s)	49, 277, 304, 316
BstDEI	CTNAG	1 cut(s)	666
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	2 cut(s)	206, 302
BstKTI	GATC	4 cut(s)	101, 192, 345, 505
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	4 cut(s)	98, 189, 342, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 324, 379, 458
BstNI	CCWGG	2 cut(s)	408, 483
BstSCI	CCNGG	3 cut(s)	107, 406, 481
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	46, 218
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	51, 173
BtgI	CCRYGG	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	3 cut(s)	78, 389, 469
Cac8I	GCNNGC	4 cut(s)	49, 277, 304, 316
CfoI	GCGC	2 cut(s)	206, 302
Cfr42I	CCGCGG	1 cut(s)	171
CseI	GACGC	1 cut(s)	379
CviAII	CATG	4 cut(s)	56, 65, 256, 293
DdeI	CTNAG	1 cut(s)	666
DpnI	GATC	4 cut(s)	100, 191, 344, 504
DpnII	GATC	4 cut(s)	98, 189, 342, 502
EaeI	YGGCCR	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	406, 481
FaeI	CATG	4 cut(s)	59, 68, 259, 296
FatI	CATG	4 cut(s)	55, 64, 255, 292
FauNDI	CATATG	2 cut(s)	182, 377
Fnu4HI	GCNGC	4 cut(s)	60, 171, 207, 210
Fsp4HI	GCNGC	4 cut(s)	60, 171, 207, 210
FspBI	CTAG	2 cut(s)	276, 525
GlaI	GCGC	2 cut(s)	205, 301
GluI	GCNGC	4 cut(s)	60, 171, 207, 210
GsaI	CCCAGC	2 cut(s)	456, 561
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	51, 173
HapII	CCGG	3 cut(s)	96, 108, 324
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	2 cut(s)	206, 302
Hin1II	CATG	4 cut(s)	59, 68, 259, 296
Hin6I	GCGC	2 cut(s)	204, 300
HinP1I	GCGC	2 cut(s)	204, 300
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	3 cut(s)	289, 365, 466
HpaI	GTTAAC	1 cut(s)	607
HpaII	CCGG	3 cut(s)	96, 108, 324
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	2 cut(s)	119, 137
Hpy8I	GTNNAC	1 cut(s)	607
Hpy99I	CGWCG	2 cut(s)	332, 373
HpyAV	CCTTC	4 cut(s)	41, 62, 416, 442
HpyCH4III	ACNGT	2 cut(s)	82, 542
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	5 cut(s)	47, 68, 431, 461, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 324, 379, 458
HpyF3I	CTNAG	1 cut(s)	666
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	4 cut(s)	59, 68, 259, 296
HspAI	GCGC	2 cut(s)	204, 300
KspAI	GTTAAC	1 cut(s)	607
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	98, 189, 342, 502
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	2 cut(s)	46, 218
MaeI	CTAG	2 cut(s)	276, 525
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	3 cut(s)	82, 467, 517
MalI	GATC	4 cut(s)	100, 191, 344, 504
MboI	GATC	4 cut(s)	98, 189, 342, 502
MboII	GAAGA	3 cut(s)	184, 199, 601
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	3 cut(s)	13, 175, 426
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	2 cut(s)	35, 435
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	5 cut(s)	123, 477, 575, 606, 639
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	3 cut(s)	96, 108, 324
MspR9I	CCNGG	3 cut(s)	109, 408, 483
MvaI	CCWGG	2 cut(s)	408, 483
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	4 cut(s)	65, 324, 379, 458
NciI	CCSGG	1 cut(s)	109
NdeI	CATATG	2 cut(s)	182, 377
NdeII	GATC	4 cut(s)	98, 189, 342, 502
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	4 cut(s)	59, 68, 259, 296
NmuCI	GTSAC	2 cut(s)	82, 467
OliI	CACNNNNGTG	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	289, 365
PkrI	GCNGC	4 cut(s)	61, 172, 208, 211
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
Psp6I	CCWGG	2 cut(s)	406, 481
PspFI	CCCAGC	2 cut(s)	452, 557
PspGI	CCWGG	2 cut(s)	406, 481
PsuI	RGATCY	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	350
SacII	CCGCGG	1 cut(s)	171
SaqAI	TTAA	5 cut(s)	123, 477, 575, 606, 639
SatI	GCNGC	4 cut(s)	60, 171, 207, 210
Sau3AI	GATC	4 cut(s)	98, 189, 342, 502
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	3 cut(s)	109, 408, 483
SduI	GDGCHC	1 cut(s)	357
SfcI	CTRYAG	1 cut(s)	145
Sfr303I	CCGCGG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	13, 175, 426
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	3 cut(s)	168, 170, 210
SspMI	CTAG	2 cut(s)	276, 525
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	3 cut(s)	107, 406, 481
TaaI	ACNGT	2 cut(s)	82, 542
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	2 cut(s)	72, 368
TasI	AATT	3 cut(s)	13, 175, 426
TauI	GCSGC	2 cut(s)	173, 212
TfiI	GAWTC	2 cut(s)	289, 365
Tru1I	TTAA	5 cut(s)	123, 477, 575, 606, 639
Tru9I	TTAA	5 cut(s)	123, 477, 575, 606, 639
TscAI	CASTG	3 cut(s)	85, 389, 476
TseFI	GTSAC	2 cut(s)	82, 467
TseI	GCWGC	2 cut(s)	59, 206
Tsp45I	GTSAC	2 cut(s)	82, 467
TspDTI	ATGAA	3 cut(s)	44, 169, 281
TspRI	CASTG	3 cut(s)	85, 389, 476
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	2 cut(s)	276, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.