Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8056514.1

Orthogroup ID

OG0003578

Physical Location & Seq

Genomic Coordinates Forward (+)

171 .. 530

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8056514.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggctcaaaacaatttgtttctcctctcccttctcataacacttgcaggccttcatgctgcccatgcagtcgattacactgtcacaaacaacgccggatcaagcaccggggctgtccgatttaacagagacatcggagcagactacagcaagagaacccttatctccgcggccaatttcatatggaagatcttccagcaaagcgcagccgcagatagaaagagcgtagccaaagtcagcttgtttattgacaacatggacggggtggcgtatgctagcaacaaccagattcatgttagcgccagctacatagcaggctactccggtataaacaaaaacacgctctcagtgtgtcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

119

Amino Acids

12.75

Weight (kDa)

9.21

Isoelectric Point (pI)

14.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15130 AT2G15130 AT2G15170 AT2G15220
fragaria_vesca	FvH4_2g05020 FvH4_2g05030
malus_domestica	MD05G1090800.v1.1 MD10G1098800.v1.1 MD10G1147400.v1.1
prunus_persica	Prupe.8G136100_v2.0.a1 Prupe.8G136200_v2.0.a1
pyrus_communis	pycom05g08990 pycom05g09020
rosa_chinensis	RchiOBHm_Chr6g0254831
rosa_laevigata	RLG00000014886 RLG00000014887
rosa_multiflora	Rmu_co8056514.1_g000001 Rmu_sc0000016.1_g000002 Rmu_sc0000016.1_g000005 Rmu_sc0010925.1_g000001 Rmu_sc0010925.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210500 Rroxscaffold_7G00210510
rosa_rugosa	Rorug05G0554900 Rorug05G0555300
rosa_samantha	Rh6AG072200 Rh6AG072300 Rh6BG064400 Rh6BG064500 Rh6CG063700 Rh6CG064300 Rh6CG064400 Rh6DG060800 Rh6DG061400
rosa_wichuraiana	Rw6G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	170
AciI	CCGC	3 cut(s)	168, 170, 210
AclWI	GGATC	1 cut(s)	106
AcoI	YGGCCR	1 cut(s)	171
AluBI	AGCT	2 cut(s)	240, 306
AluI	AGCT	2 cut(s)	240, 306
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	106
AoxI	GGCC	2 cut(s)	49, 171
ApeKI	GCWGC	2 cut(s)	59, 206
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	2 cut(s)	206, 302
AsuC2I	CCSGG	1 cut(s)	109
AsuNHI	GCTAGC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	46, 218
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	303
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	4 cut(s)	60, 171, 207, 210
BlsI	GCNGC	4 cut(s)	61, 172, 208, 211
Bme1390I	CCNGG	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	109
BmtI	GCTAGC	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	109
BsaJI	CCNNGG	2 cut(s)	108, 168
BsaWI	WCCGGW	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	108, 168
BseMII	CTCAG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	46, 218
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	51, 173
BsiSI	CCGG	3 cut(s)	96, 108, 324
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	51, 173
Bsp143I	GATC	2 cut(s)	98, 189
BspACI	CCGC	3 cut(s)	168, 170, 210
BspANI	GGCC	2 cut(s)	51, 173
BspCNI	CTCAG	1 cut(s)	359
BspFNI	CGCG	1 cut(s)	170
BspOI	GCTAGC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	108, 168
BssMI	GATC	2 cut(s)	98, 189
Bst4CI	ACNGT	1 cut(s)	82
BstC8I	GCNNGC	4 cut(s)	49, 277, 304, 316
BstDEI	CTNAG	1 cut(s)	346
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	2 cut(s)	206, 302
BstKTI	GATC	2 cut(s)	101, 192
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	98, 189
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	46, 218
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	51, 173
BtgI	CCRYGG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	78, 354
Cac8I	GCNNGC	4 cut(s)	49, 277, 304, 316
CfoI	GCGC	2 cut(s)	206, 302
Cfr42I	CCGCGG	1 cut(s)	171
CviAII	CATG	4 cut(s)	56, 65, 256, 293
CviJI	RGCY	9 cut(s)	5, 51, 113, 173, 209, 230, 240, 306, 318
CviKI_1	RGCY	9 cut(s)	5, 51, 113, 173, 209, 230, 240, 306, 318
DdeI	CTNAG	1 cut(s)	346
DpnI	GATC	2 cut(s)	100, 191
DpnII	GATC	2 cut(s)	98, 189
EaeI	YGGCCR	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	51
FaeI	CATG	4 cut(s)	59, 68, 259, 296
FatI	CATG	4 cut(s)	55, 64, 255, 292
FauNDI	CATATG	1 cut(s)	182
Fnu4HI	GCNGC	4 cut(s)	60, 171, 207, 210
Fsp4HI	GCNGC	4 cut(s)	60, 171, 207, 210
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	2 cut(s)	205, 301
GluI	GCNGC	4 cut(s)	60, 171, 207, 210
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	51, 173
HapII	CCGG	3 cut(s)	96, 108, 324
HhaI	GCGC	2 cut(s)	206, 302
Hin1II	CATG	4 cut(s)	59, 68, 259, 296
Hin6I	GCGC	2 cut(s)	204, 300
HinP1I	GCGC	2 cut(s)	204, 300
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	3 cut(s)	96, 108, 324
Hpy188I	TCNGA	2 cut(s)	119, 137
HpyAV	CCTTC	2 cut(s)	41, 62
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	47, 68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	346
Hsp92II	CATG	4 cut(s)	59, 68, 259, 296
HspAI	GCGC	2 cut(s)	204, 300
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	98, 189
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	8 cut(s)	33, 109, 121, 209, 299, 300, 316, 337
Lsp1109I	GCAGC	2 cut(s)	46, 218
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	100, 191
MboI	GATC	2 cut(s)	98, 189
MboII	GAAGA	2 cut(s)	184, 199
MflI	RGATCY	1 cut(s)	189
MluCI	AATT	2 cut(s)	13, 175
MnlI	CCTC	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	2 cut(s)	123, 358
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	3 cut(s)	96, 108, 324
MspR9I	CCNGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	65
NciI	CCSGG	1 cut(s)	109
NdeI	CATATG	1 cut(s)	182
NdeII	GATC	2 cut(s)	98, 189
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	4 cut(s)	59, 68, 259, 296
NmuCI	GTSAC	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	4 cut(s)	61, 172, 208, 211
PsuI	RGATCY	1 cut(s)	189
SacII	CCGCGG	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	123, 358
SatI	GCNGC	4 cut(s)	60, 171, 207, 210
Sau3AI	GATC	2 cut(s)	98, 189
ScrFI	CCNGG	1 cut(s)	109
SetI	ASST	2 cut(s)	242, 308
SfcI	CTRYAG	1 cut(s)	145
Sfr303I	CCGCGG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	171
Sse9I	AATT	2 cut(s)	13, 175
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	3 cut(s)	168, 170, 210
SspMI	CTAG	1 cut(s)	276
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	72
TasI	AATT	2 cut(s)	13, 175
TauI	GCSGC	2 cut(s)	173, 212
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	2 cut(s)	123, 358
Tru9I	TTAA	2 cut(s)	123, 358
TscAI	CASTG	2 cut(s)	85, 354
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	59, 206
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	44, 169, 281
TspRI	CASTG	2 cut(s)	85, 354
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.