Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003578

Physical Location & Seq

Genomic Coordinates Reverse (-)

15649967 .. 15650647

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G136200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTCATATTTTCTTGCTCTCCTTCCTCCTAACACTAGCAACTGCCCTTCATGGTACCCATGCAGTCGACTACGTCGTCACCAACAAGGCCGGAGCAAGCCCGGGAGGGGTCCGCTTCAACACCGACATCGGAGCCAAGTACAGCAGGCAAACCTTAATCTCCGCCACCGGTTTCATCTGGAGGGTGTTCCAGCAAAACACAGCCGCTGATAGAAAGAGTGTACAAAAGGTCACTTTGATCATTGATAACATAACCGGGGTTGCATATGCTAGCAACAATGAAATCCACGTCAGCGCTGGCTATATAGCTGGTTACTCAGGCGATGTGAAGAGAGAGATCAGCGGTGTGCTCTATCATGAGTCAACGCACGTGTGGCAGTGGAATGGAAATGGTCAAGCTCCTGGGGGTTTGATTGATGGAATTGCTGATTACGTGAGGCTGAAGGCAGGGTTTGTGCCAAGCCACTGGGTTCAGCCAGGGCAAGGGAATAGGTGGGACCAAGGCTATGATGTTACTGCTAGGTTTTTGGACTATTTGAATGGTCGGAGAAGTGGGTTTGTGGCAGAACTCAATAAGAAATTGAGGAGCGGTTATAGTGCCAAGTATTTTGTTGATTTGCTGGGGAAGAATGTTGATCAGCTTTGGAGTGATTACAAGGCCAAGTACGCACAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

227

Amino Acids

24.95

Weight (kDa)

9.4

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15130 AT2G15130 AT2G15170 AT2G15220
fragaria_vesca	FvH4_2g05020 FvH4_2g05030
malus_domestica	MD05G1090800.v1.1 MD10G1098800.v1.1 MD10G1147400.v1.1
prunus_persica	Prupe.8G136100_v2.0.a1 Prupe.8G136200_v2.0.a1
pyrus_communis	pycom05g08990 pycom05g09020
rosa_chinensis	RchiOBHm_Chr6g0254831
rosa_laevigata	RLG00000014886 RLG00000014887
rosa_multiflora	Rmu_co8056514.1_g000001 Rmu_sc0000016.1_g000002 Rmu_sc0000016.1_g000005 Rmu_sc0010925.1_g000001 Rmu_sc0010925.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210500 Rroxscaffold_7G00210510
rosa_rugosa	Rorug05G0554900 Rorug05G0555300
rosa_samantha	Rh6AG072200 Rh6AG072300 Rh6BG064400 Rh6BG064500 Rh6CG063700 Rh6CG064300 Rh6CG064400 Rh6DG060800 Rh6DG061400
rosa_wichuraiana	Rw6G006320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
Acc65I	GGTACC	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	591
AccI	GTMKAC	1 cut(s)	69
AciI	CCGC	5 cut(s)	115, 165, 207, 345, 591
AcuI	CTGAAG	1 cut(s)	464
AcvI	CACGTG	1 cut(s)	373
AfaI	GTAC	4 cut(s)	58, 143, 225, 668
AfeI	AGCGCT	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	109, 485
AflIII	ACRYGT	1 cut(s)	372
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	121, 541
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	2 cut(s)	403, 478
AluBI	AGCT	3 cut(s)	311, 401, 643
AluI	AGCT	3 cut(s)	311, 401, 643
Alw21I	GWGCWC	1 cut(s)	354
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	103
Aor51HI	AGCGCT	1 cut(s)	298
AoxI	GGCC	2 cut(s)	90, 660
AsiGI	ACCGGT	1 cut(s)	170
Asp718I	GGTACC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	112, 499
AsuC2I	CCSGG	3 cut(s)	104, 105, 259
AsuHPI	GGTGA	1 cut(s)	73
AsuNHI	GCTAGC	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	2 cut(s)	112, 499
BanI	GGYRCC	1 cut(s)	56
BbrPI	CACGTG	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	354
BccI	CCATC	1 cut(s)	413
BciT130I	CCWGG	2 cut(s)	405, 480
BclI	TGATCA	2 cut(s)	240, 637
BcnI	CCSGG	3 cut(s)	104, 105, 259
BfaI	CTAG	3 cut(s)	38, 273, 522
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	5 cut(s)	104, 105, 259, 405, 480
Bme18I	GGWCC	2 cut(s)	112, 499
BmeT110I	CYCGRG	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	112, 499
BmiI	GGNNCC	4 cut(s)	58, 113, 136, 500
BmrFI	CCNGG	5 cut(s)	104, 105, 259, 405, 480
BmrI	ACTGGG	1 cut(s)	478
BmtI	GCTAGC	1 cut(s)	276
BmuI	ACTGGG	1 cut(s)	478
BpmI	CTGGAG	1 cut(s)	202
BpuMI	CCSGG	3 cut(s)	104, 105, 259
BsaAI	YACGTR	2 cut(s)	373, 436
BsaJI	CCNNGG	5 cut(s)	103, 258, 404, 479, 502
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 485
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	473
BseBI	CCWGG	2 cut(s)	405, 480
BseDI	CCNNGG	5 cut(s)	103, 258, 404, 479, 502
BseLI	CCNNNNNNNGG	2 cut(s)	109, 485
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	473
BseRI	GAGGAG	1 cut(s)	601
BseYI	CCCAGC	1 cut(s)	622
BshFI	GGCC	2 cut(s)	92, 662
BshNI	GGYRCC	1 cut(s)	56
BshTI	ACCGGT	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	4 cut(s)	93, 104, 171, 258
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	2 cut(s)	109, 485
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	92, 662
BsoBI	CYCGRG	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp1407I	TGTACA	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	240, 339, 637
BspACI	CCGC	5 cut(s)	115, 165, 207, 345, 591
BspANI	GGCC	2 cut(s)	92, 662
BspCNI	CTCAG	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	4 cut(s)	58, 113, 136, 500
BspOI	GCTAGC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	591
BsrFI	RCCGGY	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	473
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	5 cut(s)	103, 258, 404, 479, 502
BssMI	GATC	3 cut(s)	240, 339, 637
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	2 cut(s)	405, 480
Bst6I	CTCTTC	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	223
BstBAI	YACGTR	2 cut(s)	373, 436
BstC8I	GCNNGC	4 cut(s)	100, 149, 274, 301
BstDEI	CTNAG	1 cut(s)	319
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	3 cut(s)	243, 342, 640
BstMBI	GATC	3 cut(s)	240, 339, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	376, 668
BstNI	CCWGG	2 cut(s)	405, 480
BstSCI	CCNGG	5 cut(s)	102, 103, 257, 403, 478
BstXI	CCANNNNNNTGG	1 cut(s)	468
BsuRI	GGCC	2 cut(s)	92, 662
BtgZI	GCGATG	1 cut(s)	339
BtrI	CACGTC	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	386
BtsIMutI	CAGTG	2 cut(s)	386, 466
Cac8I	GCNNGC	4 cut(s)	100, 149, 274, 301
CaiI	CAGNNNCTG	1 cut(s)	209
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	112, 499
Cfr9I	CCCGGG	1 cut(s)	103
Csp6I	GTAC	4 cut(s)	57, 142, 224, 667
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	3 cut(s)	53, 62, 359
CviQI	GTAC	4 cut(s)	57, 142, 224, 667
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	3 cut(s)	242, 341, 639
DpnII	GATC	3 cut(s)	240, 339, 637
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
EciI	GGCGGA	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	502
Eco47I	GGWCC	2 cut(s)	112, 499
Eco47III	AGCGCT	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	464
Eco72I	CACGTG	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	403, 478
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	3 cut(s)	56, 65, 362
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	3 cut(s)	52, 61, 358
FauNDI	CATATG	1 cut(s)	268
FbaI	TGATCA	2 cut(s)	240, 637
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	3 cut(s)	38, 273, 522
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	1 cut(s)	207
GsaI	CCCAGC	1 cut(s)	626
GsuI	CTGGAG	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	92, 662
HapII	CCGG	4 cut(s)	93, 104, 171, 258
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	3 cut(s)	56, 65, 362
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	2 cut(s)	70, 366
HindII	GTYRAC	2 cut(s)	70, 366
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	4 cut(s)	93, 104, 171, 258
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	3 cut(s)	70, 224, 366
Hpy188I	TCNGA	2 cut(s)	134, 549
Hpy188III	TCNNGA	2 cut(s)	181, 359
Hpy8I	GTNNAC	3 cut(s)	70, 224, 366
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	34, 59, 439
HpyCH4IV	ACGT	4 cut(s)	75, 291, 372, 435
HpyCH4V	TGCA	2 cut(s)	65, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	376, 668
HpyF3I	CTNAG	1 cut(s)	319
HpySE526I	ACGT	4 cut(s)	75, 291, 372, 435
Hsp92II	CATG	3 cut(s)	56, 65, 362
HspAI	GCGC	1 cut(s)	297
KpnI	GGTACC	1 cut(s)	60
Ksp22I	TGATCA	2 cut(s)	240, 637
Kzo9I	GATC	3 cut(s)	240, 339, 637
LmnI	GCTCC	4 cut(s)	95, 134, 406, 588
MaeI	CTAG	3 cut(s)	38, 273, 522
MaeII	ACGT	4 cut(s)	75, 291, 372, 435
MaeIII	GTNAC	4 cut(s)	79, 232, 314, 514
MalI	GATC	3 cut(s)	242, 341, 639
MbiI	CCGCTC	1 cut(s)	591
MboI	GATC	3 cut(s)	240, 339, 637
MboII	GAAGA	2 cut(s)	343, 640
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	3 cut(s)	423, 581, 676
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	5 cut(s)	38, 101, 177, 432, 579
MseI	TTAA	2 cut(s)	158, 679
MspA1I	CMGCKG	2 cut(s)	209, 345
MspI	CCGG	4 cut(s)	93, 104, 171, 258
MspR9I	CCNGG	5 cut(s)	104, 105, 259, 405, 480
MvaI	CCWGG	2 cut(s)	405, 480
MwoI	GCNNNNNNNGC	2 cut(s)	376, 668
NciI	CCSGG	3 cut(s)	104, 105, 259
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	3 cut(s)	240, 339, 637
NheI	GCTAGC	1 cut(s)	272
NlaIII	CATG	3 cut(s)	56, 65, 362
NlaIV	GGNNCC	4 cut(s)	58, 113, 136, 500
NmuCI	GTSAC	2 cut(s)	79, 232
PagI	TCATGA	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PflFI	GACNNNGTC	1 cut(s)	74
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	370
PmaCI	CACGTG	1 cut(s)	373
PmlI	CACGTG	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	2 cut(s)	373, 436
Psp6I	CCWGG	2 cut(s)	403, 478
PspCI	CACGTG	1 cut(s)	373
PspFI	CCCAGC	1 cut(s)	622
PspGI	CCWGG	2 cut(s)	403, 478
PspN4I	GGNNCC	4 cut(s)	58, 113, 136, 500
PspPI	GGNCC	2 cut(s)	112, 499
PstNI	CAGNNNCTG	1 cut(s)	209
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	4 cut(s)	58, 143, 225, 668
RsaNI	GTAC	4 cut(s)	57, 142, 224, 667
SalI	GTCGAC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	158, 679
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	3 cut(s)	240, 339, 637
Sau96I	GGNCC	2 cut(s)	112, 499
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	5 cut(s)	104, 105, 259, 405, 480
SduI	GDGCHC	1 cut(s)	354
SinI	GGWCC	2 cut(s)	112, 499
SmaI	CCCGGG	1 cut(s)	105
Sse9I	AATT	3 cut(s)	423, 581, 676
SsiI	CCGC	5 cut(s)	115, 165, 207, 345, 591
SspMI	CTAG	3 cut(s)	38, 273, 522
StyD4I	CCNGG	5 cut(s)	102, 103, 257, 403, 478
StyI	CCWWGG	1 cut(s)	502
TaiI	ACGT	4 cut(s)	78, 294, 375, 438
TaqI	TCGA	1 cut(s)	69
TasI	AATT	3 cut(s)	423, 581, 676
TatI	WGTACW	2 cut(s)	141, 223
TauI	GCSGC	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	158, 679
Tru9I	TTAA	2 cut(s)	158, 679
TscAI	CASTG	2 cut(s)	386, 473
TseFI	GTSAC	2 cut(s)	79, 232
Tsp45I	GTSAC	2 cut(s)	79, 232
TspDTI	ATGAA	3 cut(s)	41, 166, 297
TspMI	CCCGGG	1 cut(s)	103
TspRI	CASTG	2 cut(s)	386, 473
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	2 cut(s)	112, 499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmaI	CCCGGG	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	69
XspI	CTAG	3 cut(s)	38, 273, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.