Rh6CG063700

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003578
Physical Location & Seq
Forward (+)
6289373 .. 6315950
26578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG063700.1

Sequence Viewer

Length: 681 bp
ATGGCTAAAAACAGTATTTTTCCCCTCTCCCTTTTGATAACACTTGCAAGCCTTCACGCCGCGCTTGCAGTCGACTACACAGTCACCAACAACGCCGCATCAAGCGCCGGTGGCATCCGATTCAACAACGACATCGGAGCAGACTACAGCTCGCAAACCCTAGCCTCTGCGGCCGACTTCATATGGAAAGTCTTCCAGCAAAGCGCAGATGCGGATAGAAAGAGCGTAGCCAAAGTCAGCTTGTTCATCGACAACATGGACGGCGTGGCGTACGCTAGCAACAACGAGATTCATGTTAGCGCCAGTTACATAGCAGGCTACTCAGGCGACGTGAAAAAGGAGATTACGGGTGTGCTCTACCACGAATCGACCCACATATGGCAGTGGAATGGCAATGGTCAAGCCCCAGGTGGGTTGATTGAAGGAATTGCAGACTTTGTGAGGTTGAAGGCTGGGTATGCACCGAGTCACTGGGTTAAGCCAGGTCAAGGGGATAGGTGGGATCAAGGTTATGATGTTACTGCTAGGTTTTTGGATTACTGTAATAGTTTGAAAGCTGGGTTTGTTGCAGAGTTGAACAAGAAGTTGAAGACTGGTTATAGTGTTAACTACTTTGTTGATATTTTGGGAAAGAATGTTAATCAGCTCTGGGCTGATTACAAGGCTAAGTATGGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

226

Amino Acids

24.65

Weight (kDa)

6.96

Isoelectric Point (pI)

19.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 23 - 220 8.7e-81 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 72
AccII CGCG 1 cut(s) 62
AciI CCGC 4 cut(s) 60, 96, 170, 212
AclWI GGATC 1 cut(s) 510
AcoI YGGCCR 1 cut(s) 171
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 3 cut(s) 378, 411, 488
AgsI TTSAA 6 cut(s) 124, 422, 448, 553, 577, 589
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 2 cut(s) 406, 481
AluBI AGCT 4 cut(s) 150, 240, 557, 646
AluI AGCT 4 cut(s) 150, 240, 557, 646
Alw21I GWGCWC 1 cut(s) 357
AlwI GGATC 1 cut(s) 510
AoxI GGCC 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 4 cut(s) 64, 107, 206, 302
AsuHPI GGTGA 1 cut(s) 76
AsuNHI GCTAGC 1 cut(s) 275
BbsI GAAGAC 2 cut(s) 184, 596
Bbv12I GWGCWC 1 cut(s) 357
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 408, 483
BfaI CTAG 3 cut(s) 161, 276, 525
BfmI CTRYAG 1 cut(s) 145
BfoI RGCGCY 2 cut(s) 108, 303
BglI GCCNNNNNGGC 1 cut(s) 170
BisI GCNGC 3 cut(s) 60, 96, 171
BlsI GCNGC 3 cut(s) 61, 97, 172
Bme1390I CCNGG 2 cut(s) 408, 483
BmgBI CACGTC 1 cut(s) 331
BmrFI CCNGG 2 cut(s) 408, 483
BmrI ACTGGG 1 cut(s) 481
BmsI GCATC 3 cut(s) 107, 123, 199
BmtI GCTAGC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 481
BpiI GAAGAC 2 cut(s) 184, 596
BsaJI CCNNGG 1 cut(s) 406
Bsc4I CCNNNNNNNGG 3 cut(s) 378, 411, 488
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 3 cut(s) 303, 476, 598
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 2 cut(s) 408, 483
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 3 cut(s) 378, 411, 488
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 3 cut(s) 303, 476, 598
BseX3I CGGCCG 1 cut(s) 171
BseYI CCCAGC 2 cut(s) 452, 557
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 1 cut(s) 108
BsiWI CGTACG 1 cut(s) 270
BslI CCNNNNNNNGG 3 cut(s) 378, 411, 488
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 1 cut(s) 502
BspACI CCGC 4 cut(s) 60, 96, 170, 212
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 335
BspFNI CGCG 1 cut(s) 62
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 1 cut(s) 510
BsrDI GCAATG 1 cut(s) 400
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 3 cut(s) 303, 476, 598
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 1 cut(s) 502
Bst2UI CCWGG 2 cut(s) 408, 483
Bst4CI ACNGT 3 cut(s) 14, 82, 542
BstC8I GCNNGC 5 cut(s) 49, 66, 152, 277, 316
BstDEI CTNAG 2 cut(s) 322, 666
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 62
BstH2I RGCGCY 2 cut(s) 108, 303
BstHHI GCGC 4 cut(s) 64, 107, 206, 302
BstKTI GATC 1 cut(s) 505
BstMBI GATC 1 cut(s) 502
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 6 cut(s) 65, 104, 111, 170, 324, 458
BstNI CCWGG 2 cut(s) 408, 483
BstSCI CCNGG 2 cut(s) 406, 481
BstSFI CTRYAG 1 cut(s) 145
BstUI CGCG 1 cut(s) 62
BstV2I GAAGAC 2 cut(s) 184, 596
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 1 cut(s) 173
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 2 cut(s) 389, 469
Cac8I GCNNGC 5 cut(s) 49, 66, 152, 277, 316
CfoI GCGC 4 cut(s) 64, 107, 206, 302
Cfr10I RCCGGY 1 cut(s) 107
Csp6I GTAC 1 cut(s) 271
CviAII CATG 2 cut(s) 256, 293
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 2 cut(s) 322, 666
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 171
EagI CGGCCG 1 cut(s) 171
EclXI CGGCCG 1 cut(s) 171
Eco52I CGGCCG 1 cut(s) 171
EcoRII CCWGG 2 cut(s) 406, 481
FaeI CATG 2 cut(s) 259, 296
FatI CATG 2 cut(s) 255, 292
FauNDI CATATG 2 cut(s) 182, 377
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 60, 96, 171
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 60, 96, 171
FspBI CTAG 3 cut(s) 161, 276, 525
GlaI GCGC 4 cut(s) 63, 106, 205, 301
GluI GCNGC 3 cut(s) 60, 96, 171
GsaI CCCAGC 2 cut(s) 456, 561
HaeII RGCGCY 2 cut(s) 108, 303
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 108
HhaI GCGC 4 cut(s) 64, 107, 206, 302
Hin1II CATG 2 cut(s) 259, 296
Hin6I GCGC 4 cut(s) 62, 105, 204, 300
HinP1I GCGC 4 cut(s) 62, 105, 204, 300
HincII GTYRAC 2 cut(s) 73, 607
HindII GTYRAC 2 cut(s) 73, 607
HinfI GANTC 4 cut(s) 120, 289, 365, 466
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 1 cut(s) 108
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 73, 607
Hpy188I TCNGA 2 cut(s) 119, 137
Hpy8I GTNNAC 2 cut(s) 73, 607
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 3 cut(s) 62, 416, 442
HpyCH4III ACNGT 3 cut(s) 14, 82, 542
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 5 cut(s) 47, 68, 431, 461, 569
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 104, 111, 170, 324, 458
HpyF3I CTNAG 2 cut(s) 322, 666
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 2 cut(s) 259, 296
HspAI GCGC 4 cut(s) 62, 105, 204, 300
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 1 cut(s) 502
LmnI GCTCC 1 cut(s) 137
LweI GCATC 3 cut(s) 107, 123, 199
MaeI CTAG 3 cut(s) 161, 276, 525
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 4 cut(s) 82, 305, 467, 517
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MboII GAAGA 2 cut(s) 184, 601
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 1 cut(s) 426
MlyI GAGTC 1 cut(s) 475
MnlI CCTC 3 cut(s) 35, 175, 435
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 3 cut(s) 477, 606, 639
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 2 cut(s) 408, 483
MvaI CCWGG 2 cut(s) 408, 483
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 6 cut(s) 65, 104, 111, 170, 324, 458
NdeI CATATG 2 cut(s) 182, 377
NdeII GATC 1 cut(s) 502
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 2 cut(s) 259, 296
NmuCI GTSAC 2 cut(s) 82, 467
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 3 cut(s) 120, 289, 365
Pfl23II CGTACG 1 cut(s) 270
PkrI GCNGC 3 cut(s) 61, 97, 172
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
Psp6I CCWGG 2 cut(s) 406, 481
PspFI CCCAGC 2 cut(s) 452, 557
PspGI CCWGG 2 cut(s) 406, 481
PspLI CGTACG 1 cut(s) 270
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SalI GTCGAC 1 cut(s) 71
SaqAI TTAA 3 cut(s) 477, 606, 639
SatI GCNGC 3 cut(s) 60, 96, 171
Sau3AI GATC 1 cut(s) 502
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 2 cut(s) 408, 483
SduI GDGCHC 1 cut(s) 357
SfaNI GCATC 3 cut(s) 107, 123, 199
SfcI CTRYAG 1 cut(s) 145
SgrAI CRCCGGYG 1 cut(s) 107
Sse9I AATT 1 cut(s) 426
SsiI CCGC 4 cut(s) 60, 96, 170, 212
SspMI CTAG 3 cut(s) 161, 276, 525
StyD4I CCNGG 2 cut(s) 406, 481
TaaI ACNGT 3 cut(s) 14, 82, 542
TaiI ACGT 1 cut(s) 333
TaqI TCGA 3 cut(s) 72, 249, 368
TasI AATT 1 cut(s) 426
TauI GCSGC 3 cut(s) 62, 98, 173
TfiI GAWTC 3 cut(s) 120, 289, 365
Tru1I TTAA 3 cut(s) 477, 606, 639
Tru9I TTAA 3 cut(s) 477, 606, 639
TscAI CASTG 2 cut(s) 389, 476
TseFI GTSAC 2 cut(s) 82, 467
Tsp45I GTSAC 2 cut(s) 82, 467
TspDTI ATGAA 3 cut(s) 169, 235, 281
TspRI CASTG 2 cut(s) 389, 476
XmiI GTMKAC 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 3 cut(s) 161, 276, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.