Rh6CG064300

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003578
Physical Location & Seq
Forward (+)
6364307 .. 6365599
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG064300.1

Sequence Viewer

Length: 537 bp
ATGGCTCAAAACTGTATTTTTCTCCTCTCCCTTTTGATAACACTTGCAGGCCTTCACGCCGCGCATGCAGTCGACTACACAGTCACCAACAACGCCGCATCAAGCGCCGGTGGCATCCGATTCAACAACGACATCGGAGCAGACTACAGCTTGCAAACCCTAACCTCTGCGGCCGACTTCATATGGAAAGTCTTCCAGCAAAGCACAGATGCGGATAGAAAGAGCGTAGCCAAAGTCAGCTTGTTCATCGACAACATGGACGGCGTGGCGTACTCTAGCAACAACGAGATTCATGTTAGCGCCAGTTACATAGCAGGCTACTCAGGCGACGTGAAGAAGGAGATTACAGGTGTGCTCTACCACGAATCGACGCACATATGGCAGTGGAATGGAAATGGTCAAGCCCCAGGTGGGTTGATTGAAGGAATTGCAGACTTTGTGAGGTTGAGGGCTGGGTATGCACCGAGTCACTGGGTTCAACCAGGTGAAGGGGATAAGTGGGACCAGGGTTATGATGTTACTGCTAGACACCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

178

Amino Acids

19.31

Weight (kDa)

5.32

Isoelectric Point (pI)

23.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 23 - 178 8.2e-59 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 72
AccII CGCG 1 cut(s) 62
AciI CCGC 4 cut(s) 60, 96, 170, 212
AcoI YGGCCR 1 cut(s) 171
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 411, 488
AgsI TTSAA 3 cut(s) 124, 422, 479
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 3 cut(s) 406, 481, 504
AluBI AGCT 2 cut(s) 150, 240
AluI AGCT 2 cut(s) 150, 240
Alw21I GWGCWC 1 cut(s) 357
AoxI GGCC 2 cut(s) 49, 171
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 3 cut(s) 64, 107, 302
AspS9I GGNCC 1 cut(s) 502
AsuHPI GGTGA 2 cut(s) 76, 497
AvaII GGWCC 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 357
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 3 cut(s) 408, 483, 506
BfaI CTAG 2 cut(s) 276, 525
BfmI CTRYAG 2 cut(s) 145, 533
BfoI RGCGCY 2 cut(s) 108, 303
BisI GCNGC 3 cut(s) 60, 96, 171
BlsI GCNGC 3 cut(s) 61, 97, 172
Bme1390I CCNGG 3 cut(s) 408, 483, 506
Bme18I GGWCC 1 cut(s) 502
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 1 cut(s) 503
BmrFI CCNGG 3 cut(s) 408, 483, 506
BmrI ACTGGG 1 cut(s) 481
BmsI GCATC 3 cut(s) 107, 123, 199
BmuI ACTGGG 1 cut(s) 481
BpiI GAAGAC 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 406, 505
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 488
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 303, 476
BseBI CCWGG 3 cut(s) 408, 483, 506
BseDI CCNNGG 2 cut(s) 406, 505
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 411, 488
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 2 cut(s) 303, 476
BseRI GAGGAG 1 cut(s) 14
BseX3I CGGCCG 1 cut(s) 171
BseYI CCCAGC 1 cut(s) 452
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 51, 173
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 2 cut(s) 411, 488
BsmFI GGGAC 1 cut(s) 515
BsnI GGCC 2 cut(s) 51, 173
Bsp1286I GDGCHC 1 cut(s) 357
BspACI CCGC 4 cut(s) 60, 96, 170, 212
BspANI GGCC 2 cut(s) 51, 173
BspCNI CTCAG 1 cut(s) 335
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 503
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 2 cut(s) 303, 476
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 406, 505
Bst2UI CCWGG 3 cut(s) 408, 483, 506
Bst4CI ACNGT 2 cut(s) 14, 82
BstC8I GCNNGC 4 cut(s) 49, 66, 152, 316
BstDEI CTNAG 1 cut(s) 322
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 62
BstH2I RGCGCY 2 cut(s) 108, 303
BstHHI GCGC 3 cut(s) 64, 107, 302
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 6 cut(s) 65, 104, 111, 324, 379, 458
BstNI CCWGG 3 cut(s) 408, 483, 506
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 3 cut(s) 406, 481, 504
BstSFI CTRYAG 2 cut(s) 145, 533
BstUI CGCG 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 184
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 51, 173
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 2 cut(s) 389, 469
Cac8I GCNNGC 4 cut(s) 49, 66, 152, 316
CfoI GCGC 3 cut(s) 64, 107, 302
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 502
CseI GACGC 1 cut(s) 379
CsiI ACCWGGT 1 cut(s) 481
Csp6I GTAC 1 cut(s) 271
CviAII CATG 3 cut(s) 65, 256, 293
CviJI RGCY 9 cut(s) 5, 51, 150, 173, 230, 240, 318, 404, 452
CviKI_1 RGCY 9 cut(s) 5, 51, 150, 173, 230, 240, 318, 404, 452
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 1 cut(s) 322
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 171
EagI CGGCCG 1 cut(s) 171
EclXI CGGCCG 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 502
Eco52I CGGCCG 1 cut(s) 171
EcoRII CCWGG 3 cut(s) 406, 481, 504
FaeI CATG 3 cut(s) 68, 259, 296
FaqI GGGAC 1 cut(s) 515
FatI CATG 3 cut(s) 64, 255, 292
FauNDI CATATG 2 cut(s) 182, 377
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 60, 96, 171
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 60, 96, 171
FspBI CTAG 2 cut(s) 276, 525
GlaI GCGC 3 cut(s) 63, 106, 301
GluI GCNGC 3 cut(s) 60, 96, 171
GsaI CCCAGC 1 cut(s) 456
HaeII RGCGCY 2 cut(s) 108, 303
HaeIII GGCC 2 cut(s) 51, 173
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 379
HhaI GCGC 3 cut(s) 64, 107, 302
Hin1II CATG 3 cut(s) 68, 259, 296
Hin6I GCGC 3 cut(s) 62, 105, 300
HinP1I GCGC 3 cut(s) 62, 105, 300
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 4 cut(s) 120, 289, 365, 466
HpaII CCGG 1 cut(s) 108
HphI GGTGA 2 cut(s) 76, 497
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 119, 137
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 2 cut(s) 332, 373
HpyAV CCTTC 4 cut(s) 62, 331, 416, 482
HpyCH4III ACNGT 2 cut(s) 14, 82
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 5 cut(s) 47, 68, 154, 431, 461
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 104, 111, 324, 379, 458
HpyF3I CTNAG 1 cut(s) 322
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 3 cut(s) 68, 259, 296
HspAI GCGC 3 cut(s) 62, 105, 300
LmnI GCTCC 1 cut(s) 137
LweI GCATC 3 cut(s) 107, 123, 199
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 2 cut(s) 276, 525
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 4 cut(s) 82, 305, 467, 517
MboII GAAGA 2 cut(s) 184, 346
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 1 cut(s) 426
MlyI GAGTC 1 cut(s) 475
MnlI CCTC 4 cut(s) 35, 175, 435, 441
MroXI GAANNNNTTC 1 cut(s) 191
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 3 cut(s) 408, 483, 506
MvaI CCWGG 3 cut(s) 408, 483, 506
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 6 cut(s) 65, 104, 111, 324, 379, 458
NdeI CATATG 2 cut(s) 182, 377
NlaIII CATG 3 cut(s) 68, 259, 296
NlaIV GGNNCC 1 cut(s) 503
NmuCI GTSAC 2 cut(s) 82, 467
NspI RCATGY 1 cut(s) 68
PaeI GCATGC 1 cut(s) 68
PceI AGGCCT 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 3 cut(s) 120, 289, 365
PkrI GCNGC 3 cut(s) 61, 97, 172
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
Psp6I CCWGG 3 cut(s) 406, 481, 504
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 3 cut(s) 406, 481, 504
PspN4I GGNNCC 1 cut(s) 503
PspPI GGNCC 1 cut(s) 502
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SalI GTCGAC 1 cut(s) 71
SatI GCNGC 3 cut(s) 60, 96, 171
Sau96I GGNCC 1 cut(s) 502
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 3 cut(s) 408, 483, 506
SduI GDGCHC 1 cut(s) 357
SetI ASST 9 cut(s) 152, 167, 242, 333, 352, 412, 446, 487, 534
SexAI ACCWGGT 1 cut(s) 481
SfaNI GCATC 3 cut(s) 107, 123, 199
SfcI CTRYAG 2 cut(s) 145, 533
SgrAI CRCCGGYG 1 cut(s) 107
SinI GGWCC 1 cut(s) 502
SphI GCATGC 1 cut(s) 68
Sse9I AATT 1 cut(s) 426
SseBI AGGCCT 1 cut(s) 51
SsiI CCGC 4 cut(s) 60, 96, 170, 212
SspMI CTAG 2 cut(s) 276, 525
StuI AGGCCT 1 cut(s) 51
StyD4I CCNGG 3 cut(s) 406, 481, 504
TaaI ACNGT 2 cut(s) 14, 82
TaiI ACGT 1 cut(s) 333
TaqI TCGA 3 cut(s) 72, 249, 368
TasI AATT 1 cut(s) 426
TauI GCSGC 3 cut(s) 62, 98, 173
TfiI GAWTC 3 cut(s) 120, 289, 365
TscAI CASTG 2 cut(s) 389, 476
TseFI GTSAC 2 cut(s) 82, 467
Tsp45I GTSAC 2 cut(s) 82, 467
TspDTI ATGAA 3 cut(s) 169, 235, 281
TspRI CASTG 2 cut(s) 389, 476
VpaK11BI GGWCC 1 cut(s) 502
XceI RCATGY 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 2 cut(s) 276, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.