AT2G16280

3-ketoacyl-coa synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
7050799 .. 7052951
2153 bp
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UTR
Exon/CDS
Intron
AT2G16280.1

Sequence Viewer

Length: 1539 bp
ATGGAAGCTGCTAATGAGCCTGTTAATGGCGGATCCGTACAGATCCGAACAGAGAACAACGAAAGACGAAAGCTTCCTAATTTCTTACAAAGCGTCAACATGAAATACGTCAAGCTAGGTTATCATTACCTCATTACTCATCTCTTCAAGCTCTGTTTGGTTCCATTAATGGCGGTTTTAGTCACAGAGATCTCTCGATTAACAACAGACGATCTTTACCAGATTTGGCTTCATCTCCAATACAATCTCGTTGCTTTCATCTTTCTCTCTGCTTTAGCTATCTTTGGCTCCACCGTTTACATCATGAGTCGTCCCAGATCTGTTTATCTCGTTGATTACTCTTGTTATCTTCCTCCGGAGAGTCTTCAGGTTAAGTATCAGAAGTTTATGGATCATTCTAAGTTGATTGAAGATTTCAATGAGTCATCTTTAGAGTTTCAGAGGAAGATTCTTGAACGTTCTGGTTTAGGAGAAGAGACTTATCTCCCTGAAGCTTTACATTGTATCCCTCCGAGGCCTACGATGATGGCGGCTCGTGAGGAATCTGAGCAGGTAATGTTTGGTGCTCTTGATAAGCTTTTCGAGAATACCAAGATTAACCCTAGGGATATTGGTGTGTTGGTTGTGAATTGTAGCTTGTTTAATCCTACACCTTCGTTGTCAGCTATGATTGTTAACAAGTATAAGCTTAGAGGGAATGTTAAGAGTTTTAACCTTGGTGGAATGGGGTGTAGTGCTGGTGTTATCTCTATCGATTTAGCTAAAGATATGTTGCAAGTTCATAGGAATACTTATGCTGTTGTGGTTAGTACTGAGAACATTACTCAGAATTGGTATTTTGGGAATAAGAAGGCTATGTTGATTCCGAATTGTTTGTTTCGTGTTGGTGGTTCGGCGATTTTGTTGTCGAACAAGGGGAAAGATCGTAGACGGTCTAAGTATAAGCTTGTTCATACCGTTAGGACTCATAAAGGAGCTGTTGAGAAGGCTTTCAACTGTGTTTACCAAGAGCAAGATGATAATGGGAAGACCGGGGTTTCGTTGTCGAAAGATCTTATGGCTATAGCTGGGGAAGCTCTTAAGGCGAATATCACTACTTTAGGTCCTTTGGTTCTTCCTATAAGTGAGCAGATTCTGTTTTTCATGACTTTGGTTACGAAGAAACTGTTTAACTCGAAGCTGAAGCCGTATATTCCGGATTTCAAGCTTGCGTTTGATCATTTCTGTATCCATGCTGGTGGTAGAGCTGTGATTGATGAGCTTGAGAAGAATCTGCAGCTTTCGCAGACTCATGTCGAGGCATCCAGAATGACACTGCACAGATTTGGAAACACTTCTTCGAGCTCGATTTGGTATGAACTGGCTTACATAGAGGCTAAAGGTAGGATGAAGAAAGGAAACCGGGTTTGGCAGATTGCTTTTGGAAGTGGGTTTAAGTGTAACAGTGCAGTTTGGGTGGCTCTAAACAATGTCAAGCCTTCGGTTAGTAGTCCGTGGGAACACTGCATCGACCGATATCCGGTTAAGCTCGACTTCTGA

Protein Analysis

512

Amino Acids

57.97

Weight (kDa)

9.2

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 100 - 389 2e-144 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 406 - 485 6.5e-12 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 408 - 478 3.6e-10 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 541
AccI GTMKAC 1 cut(s) 928
AccIII TCCGGA 2 cut(s) 355, 1195
AciI CCGC 3 cut(s) 30, 173, 530
AclI AACGTT 1 cut(s) 457
AclWI GGATC 4 cut(s) 27, 37, 40, 399
AcuI CTGAAG 3 cut(s) 350, 510, 1202
AfaI GTAC 2 cut(s) 39, 811
AfiI CCNNNNNNNGG 2 cut(s) 26, 1519
AflII CTTAAG 1 cut(s) 1079
AgsI TTSAA 6 cut(s) 148, 410, 418, 455, 994, 1204
AjuI GAANNNNNNNTTGG 2 cut(s) 1390, 1422
Alw21I GWGCWC 2 cut(s) 568, 1346
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 4 cut(s) 27, 37, 40, 399
AlwNI CAGNNNCTG 1 cut(s) 1135
Aor13HI TCCGGA 2 cut(s) 355, 1195
AoxI GGCC 1 cut(s) 515
ApeKI GCWGC 2 cut(s) 8, 1276
ArsI GACNNNNNNTTYG 2 cut(s) 1021, 1053
AseI ATTAAT 1 cut(s) 167
Asp700I GAANNNNTTC 2 cut(s) 989, 1333
AspA2I CCTAGG 1 cut(s) 602
AspS9I GGNCC 1 cut(s) 1103
AsuC2I CCSGG 2 cut(s) 1033, 1403
AvaII GGWCC 1 cut(s) 1103
AvrII CCTAGG 1 cut(s) 602
BamHI GGATCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 1346
BauI CACGAG 1 cut(s) 534
BbsI GAAGAC 2 cut(s) 356, 1034
Bbv12I GWGCWC 2 cut(s) 568, 1346
BbvI GCAGC 1 cut(s) 1288
BccI CCATC 1 cut(s) 520
BceAI ACGGC 1 cut(s) 1171
BciVI GTATCC 2 cut(s) 515, 1238
BclI TGATCA 1 cut(s) 1216
BcnI CCSGG 2 cut(s) 1033, 1403
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 2 cut(s) 116, 603
BfmI CTRYAG 2 cut(s) 1062, 1274
BfrI CTTAAG 1 cut(s) 1079
BfuAI ACCTGC 1 cut(s) 541
BfuI GTATCC 2 cut(s) 515, 1238
BglII AGATCT 3 cut(s) 189, 317, 1051
BisI GCNGC 3 cut(s) 9, 531, 1277
BlnI CCTAGG 1 cut(s) 602
BlsI GCNGC 3 cut(s) 10, 532, 1278
BmcAI AGTACT 1 cut(s) 811
Bme1390I CCNGG 2 cut(s) 1033, 1403
Bme18I GGWCC 1 cut(s) 1103
BmgT120I GGNCC 1 cut(s) 1103
BmiI GGNNCC 3 cut(s) 34, 162, 289
BmrFI CCNGG 2 cut(s) 1033, 1403
BmsI GCATC 2 cut(s) 1310, 1515
BoxI GACNNNNGTC 1 cut(s) 1292
BpiI GAAGAC 2 cut(s) 356, 1034
BpuEI CTTGAG 1 cut(s) 1283
BpuMI CCSGG 2 cut(s) 1033, 1403
Bsa29I ATCGAT 1 cut(s) 753
BsaJI CCNNGG 5 cut(s) 512, 602, 715, 1032, 1493
BsaWI WCCGGW 3 cut(s) 355, 1195, 1519
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 1519
Bse1I ACTGG 1 cut(s) 1365
BseAI TCCGGA 2 cut(s) 355, 1195
BseCI ATCGAT 1 cut(s) 753
BseDI CCNNGG 5 cut(s) 512, 602, 715, 1032, 1493
BseGI GGATG 2 cut(s) 1301, 1392
BseLI CCNNNNNNNGG 2 cut(s) 26, 1519
BseMII CTCAG 3 cut(s) 537, 804, 839
BseNI ACTGG 1 cut(s) 1365
BseXI GCAGC 1 cut(s) 1288
BseYI CCCAGC 1 cut(s) 1067
BsgI GTGCAG 2 cut(s) 1301, 1467
Bsh1285I CGRYCG 1 cut(s) 1513
BshFI GGCC 1 cut(s) 517
BshVI ATCGAT 1 cut(s) 753
BsiEI CGRYCG 1 cut(s) 1513
BsiHKAI GWGCWC 2 cut(s) 568, 1346
BsiSI CCGG 5 cut(s) 356, 1032, 1196, 1402, 1520
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 26, 1519
BsmAI GTCTC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 297
BsnI GGCC 1 cut(s) 517
Bsp1286I GDGCHC 2 cut(s) 568, 1346
Bsp13I TCCGGA 2 cut(s) 355, 1195
Bsp143I GATC 9 cut(s) 32, 42, 189, 211, 317, 391, 922, 1051, 1216
BspACI CCGC 3 cut(s) 30, 173, 530
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 3 cut(s) 538, 805, 838
BspDI ATCGAT 1 cut(s) 753
BspEI TCCGGA 2 cut(s) 355, 1195
BspHI TCATGA 2 cut(s) 303, 1143
BspLI GGNNCC 3 cut(s) 34, 162, 289
BspMAI CTGCAG 1 cut(s) 1278
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 4 cut(s) 27, 37, 40, 399
BspTI CTTAAG 1 cut(s) 1079
BsrI ACTGG 1 cut(s) 1365
BssECI CCNNGG 5 cut(s) 512, 602, 715, 1032, 1493
BssMI GATC 9 cut(s) 32, 42, 189, 211, 317, 391, 922, 1051, 1216
BssSI CACGAG 1 cut(s) 534
BssT1I CCWWGG 2 cut(s) 602, 715
Bst2BI CACGAG 1 cut(s) 534
Bst4CI ACNGT 6 cut(s) 295, 933, 958, 998, 1167, 1445
Bst6I CTCTTC 2 cut(s) 149, 468
BstAFI CTTAAG 1 cut(s) 1079
BstC8I GCNNGC 1 cut(s) 1209
BstDEI CTNAG 6 cut(s) 399, 546, 689, 813, 825, 936
BstDSI CCRYGG 1 cut(s) 1493
BstF5I GGATG 2 cut(s) 1301, 1392
BstKTI GATC 9 cut(s) 35, 45, 192, 214, 320, 394, 925, 1054, 1219
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 9 cut(s) 32, 42, 189, 211, 317, 391, 922, 1051, 1216
BstMCI CGRYCG 1 cut(s) 1513
BstMWI GCNNNNNNNGC 3 cut(s) 1073, 1082, 1282
BstPAI GACNNNNGTC 1 cut(s) 1292
BstSCI CCNGG 2 cut(s) 1031, 1401
BstSFI CTRYAG 2 cut(s) 1062, 1274
BstV1I GCAGC 1 cut(s) 1288
BstV2I GAAGAC 2 cut(s) 356, 1034
BstX2I RGATCY 5 cut(s) 32, 42, 189, 317, 1051
BstXI CCANNNNNNTGG 1 cut(s) 1238
BstYI RGATCY 5 cut(s) 32, 42, 189, 317, 1051
Bsu15I ATCGAT 1 cut(s) 753
BsuI GTATCC 2 cut(s) 515, 1238
BsuRI GGCC 1 cut(s) 517
BsuTUI ATCGAT 1 cut(s) 753
BtgI CCRYGG 1 cut(s) 1493
BtsCI GGATG 2 cut(s) 1301, 1392
BtsI GCAGTG 2 cut(s) 1313, 1501
BtsIMutI CAGTG 3 cut(s) 1313, 1450, 1501
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 1209
CaiI CAGNNNCTG 1 cut(s) 1135
CciI TCATGA 2 cut(s) 303, 1143
Cfr13I GGNCC 1 cut(s) 1103
ClaI ATCGAT 1 cut(s) 753
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 38, 810
CviAII CATG 5 cut(s) 100, 304, 1144, 1232, 1292
CviQI GTAC 2 cut(s) 38, 810
DdeI CTNAG 6 cut(s) 399, 546, 689, 813, 825, 936
DpnI GATC 9 cut(s) 34, 44, 191, 213, 319, 393, 924, 1053, 1218
DpnII GATC 9 cut(s) 32, 42, 189, 211, 317, 391, 922, 1051, 1216
Eam1104I CTCTTC 2 cut(s) 149, 468
EarI CTCTTC 2 cut(s) 149, 468
EciI GGCGGA 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 1344
Eco130I CCWWGG 2 cut(s) 602, 715
Eco147I AGGCCT 1 cut(s) 517
Eco24I GRGCYC 1 cut(s) 1346
Eco32I GATATC 1 cut(s) 1517
Eco47I GGWCC 1 cut(s) 1103
Eco53kI GAGCTC 1 cut(s) 1344
Eco57I CTGAAG 3 cut(s) 350, 510, 1202
EcoICRI GAGCTC 1 cut(s) 1344
EcoO109I RGGNCCY 1 cut(s) 1103
EcoRV GATATC 1 cut(s) 1517
EcoT14I CCWWGG 2 cut(s) 602, 715
EcoT38I GRGCYC 1 cut(s) 1346
ErhI CCWWGG 2 cut(s) 602, 715
FaeI CATG 5 cut(s) 103, 307, 1147, 1235, 1295
FalI AAGNNNNNCTT 1 cut(s) 1517
FaqI GGGAC 1 cut(s) 297
FatI CATG 5 cut(s) 99, 303, 1143, 1231, 1291
FbaI TGATCA 1 cut(s) 1216
FblI GTMKAC 1 cut(s) 928
Fnu4HI GCNGC 3 cut(s) 9, 531, 1277
FokI GGATG 2 cut(s) 1288, 1399
FriOI GRGCYC 1 cut(s) 1346
Fsp4HI GCNGC 3 cut(s) 9, 531, 1277
FspBI CTAG 2 cut(s) 116, 603
GluI GCNGC 3 cut(s) 9, 531, 1277
GsaI CCCAGC 1 cut(s) 1071
HaeIII GGCC 1 cut(s) 517
HapII CCGG 5 cut(s) 356, 1032, 1196, 1402, 1520
HgaI GACGC 1 cut(s) 82
Hin1II CATG 5 cut(s) 103, 307, 1147, 1235, 1295
HincII GTYRAC 2 cut(s) 97, 676
HindII GTYRAC 2 cut(s) 97, 676
HindIII AAGCTT 6 cut(s) 71, 492, 575, 686, 944, 1205
HpaI GTTAAC 1 cut(s) 676
HpaII CCGG 5 cut(s) 356, 1032, 1196, 1402, 1520
Hpy166II GTNNAC 5 cut(s) 97, 298, 676, 929, 1003
Hpy188I TCNGA 8 cut(s) 47, 381, 441, 513, 547, 828, 867, 1538
Hpy8I GTNNAC 5 cut(s) 97, 298, 676, 929, 1003
HpyAV CCTTC 4 cut(s) 663, 844, 979, 1488
HpyCH4III ACNGT 6 cut(s) 295, 933, 958, 998, 1167, 1445
HpyCH4IV ACGT 2 cut(s) 108, 457
HpyCH4V TGCA 5 cut(s) 775, 1276, 1318, 1448, 1506
HpyF10VI GCNNNNNNNGC 3 cut(s) 1073, 1082, 1282
HpyF3I CTNAG 6 cut(s) 399, 546, 689, 813, 825, 936
HpySE526I ACGT 2 cut(s) 108, 457
Hsp92II CATG 5 cut(s) 103, 307, 1147, 1235, 1295
Kpn2I TCCGGA 2 cut(s) 355, 1195
Ksp22I TGATCA 1 cut(s) 1216
KspAI GTTAAC 1 cut(s) 676
Kzo9I GATC 9 cut(s) 32, 42, 189, 211, 317, 391, 922, 1051, 1216
LmnI GCTCC 2 cut(s) 293, 974
Lsp1109I GCAGC 1 cut(s) 1288
LweI GCATC 2 cut(s) 1310, 1515
MaeI CTAG 2 cut(s) 116, 603
MaeII ACGT 2 cut(s) 108, 457
MaeIII GTNAC 3 cut(s) 181, 1153, 1439
MalI GATC 9 cut(s) 34, 44, 191, 213, 319, 393, 924, 1053, 1218
MboI GATC 9 cut(s) 32, 42, 189, 211, 317, 391, 922, 1051, 1216
MflI RGATCY 5 cut(s) 32, 42, 189, 317, 1051
MhlI GDGCHC 2 cut(s) 568, 1346
MluCI AATT 4 cut(s) 79, 628, 829, 868
MlyI GAGTC 5 cut(s) 316, 370, 431, 958, 1282
MnlI CCTC 9 cut(s) 140, 363, 435, 507, 519, 532, 686, 1291, 1366
MroI TCCGGA 2 cut(s) 355, 1195
MroXI GAANNNNTTC 2 cut(s) 989, 1333
MslI CAYNNNNRTG 1 cut(s) 1236
MspCI CTTAAG 1 cut(s) 1079
MspI CCGG 5 cut(s) 356, 1032, 1196, 1402, 1520
MspR9I CCNGG 2 cut(s) 1033, 1403
MwoI GCNNNNNNNGC 3 cut(s) 1073, 1082, 1282
NciI CCSGG 2 cut(s) 1033, 1403
NdeII GATC 9 cut(s) 32, 42, 189, 211, 317, 391, 922, 1051, 1216
NlaIII CATG 5 cut(s) 103, 307, 1147, 1235, 1295
NlaIV GGNNCC 3 cut(s) 34, 162, 289
NmuCI GTSAC 1 cut(s) 181
PagI TCATGA 2 cut(s) 303, 1143
PceI AGGCCT 1 cut(s) 517
PdmI GAANNNNTTC 2 cut(s) 989, 1333
PfeI GAWTC 5 cut(s) 448, 542, 862, 1132, 1270
PkrI GCNGC 3 cut(s) 10, 532, 1278
PleI GAGTC 5 cut(s) 315, 369, 430, 958, 1282
PpsI GAGTC 5 cut(s) 315, 369, 430, 958, 1282
PpuMI RGGWCCY 1 cut(s) 1103
PshAI GACNNNNGTC 1 cut(s) 1292
PshBI ATTAAT 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 1346
Psp1406I AACGTT 1 cut(s) 457
Psp5II RGGWCCY 1 cut(s) 1103
PspFI CCCAGC 1 cut(s) 1067
PspN4I GGNNCC 3 cut(s) 34, 162, 289
PspPI GGNCC 1 cut(s) 1103
PspPPI RGGWCCY 1 cut(s) 1103
PstI CTGCAG 1 cut(s) 1278
PstNI CAGNNNCTG 1 cut(s) 1135
PsuI RGATCY 5 cut(s) 32, 42, 189, 317, 1051
RsaI GTAC 2 cut(s) 39, 811
RsaNI GTAC 2 cut(s) 38, 810
RseI CAYNNNNRTG 1 cut(s) 1236
SacI GAGCTC 1 cut(s) 1346
SatI GCNGC 3 cut(s) 9, 531, 1277
Sau3AI GATC 9 cut(s) 32, 42, 189, 211, 317, 391, 922, 1051, 1216
Sau96I GGNCC 1 cut(s) 1103
ScaI AGTACT 1 cut(s) 811
SchI GAGTC 5 cut(s) 316, 370, 431, 958, 1282
ScrFI CCNGG 2 cut(s) 1033, 1403
SduI GDGCHC 2 cut(s) 568, 1346
SfaNI GCATC 2 cut(s) 1310, 1515
SfcI CTRYAG 2 cut(s) 1062, 1274
SinI GGWCC 1 cut(s) 1103
SmiMI CAYNNNNRTG 1 cut(s) 1236
SmlI CTYRAG 2 cut(s) 1079, 1262
SmoI CTYRAG 2 cut(s) 1079, 1262
Sse9I AATT 4 cut(s) 79, 628, 829, 868
SseBI AGGCCT 1 cut(s) 517
SsiI CCGC 3 cut(s) 30, 173, 530
SspMI CTAG 2 cut(s) 116, 603
SstI GAGCTC 1 cut(s) 1346
StuI AGGCCT 1 cut(s) 517
StyD4I CCNGG 2 cut(s) 1031, 1401
StyI CCWWGG 2 cut(s) 602, 715
TaaI ACNGT 6 cut(s) 295, 933, 958, 998, 1167, 1445
TaiI ACGT 2 cut(s) 111, 460
TaqII GACCGA 1 cut(s) 1527
TasI AATT 4 cut(s) 79, 628, 829, 868
TatI WGTACW 1 cut(s) 809
TauI GCSGC 1 cut(s) 533
TfiI GAWTC 5 cut(s) 448, 542, 862, 1132, 1270
TscAI CASTG 3 cut(s) 1320, 1450, 1508
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 2 cut(s) 8, 1276
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 8 cut(s) 116, 221, 247, 770, 941, 1132, 1371, 1403
TspGWI ACGGA 2 cut(s) 25, 1482
TspRI CASTG 3 cut(s) 1320, 1450, 1508
Vha464I CTTAAG 1 cut(s) 1079
VpaK11BI GGWCC 1 cut(s) 1103
VspI ATTAAT 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 602
XmiI GTMKAC 1 cut(s) 928
XmnI GAANNNNTTC 2 cut(s) 989, 1333
XspI CTAG 2 cut(s) 116, 603
ZrmI AGTACT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.