Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002307

Physical Location & Seq

Genomic Coordinates Reverse (-)

11977829 .. 11979340

Gene Structure 1512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1065300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGTGCATTTCTCCGACCACCAATGGTGGAGTTCAGAGCCGTCAGCTGCCGGATTTCTTGCAGACTGTGAACTCGAAGTATGTGAAATTGGGTTACCATTACTTGATAGCCCATCTCCTGACTCTCTGTTTAGTTCCTCTAATGGCGATCATCGTCATTGAAGCCTCCCAGGTGGACCCGGATGACATTCACCAGCTCTGGCTCCAACTCCAGAGCAATCTCGTCGCTGTCATCATTTTCTCTGCTATGGTTGTTTTTGGATCCACCGTTTATGTTATGACCCGTCCGAGATCCGTTTACCTTGTGGACTATTCGTGTTACAAGGCCCCGTCACATTTGAAAGTGAGATACCACCAGTTTATGGAGCATTCAAAGTTGATAGGGGACTTCGATAAGTCCTCGCTTGAGTTCCAGCGCAAGATTCTGGAGCGATCTGGCCTAGGAGTGGAGACTTATGTCCCTGAAGCAATGAACTATGTTCCGCCAAGGATATCAATGGCGGCGGCTCGCCAGGAGGCAGAGCAGGTGGTTTTTGGTGCATTGGATGATCTGTTTGCTAATGCAAATGTTAAGCCCAAGGACATTGGTATTCTTGTTGTGAATTGTAGTTTGTTTAATCCAACTCCTTCACTGTCTGCTATGGTTGTTAATAAGTACAAATTGAGGGGAAATATTAGAAGTTTTAATTTAGGGGGTATGGGGTGTAGTGCTGGAGTTATAGCTGTTGATCTTGCTAAGGATATGTTGCAAATTCATAGGAATACATACGCGGTTGTTGTTAGTACTGAGAATATTACTCAGAATTGGTACTTTGGGAACAAGAAATCAATGTTGATACCCAACTGTTTGTTCCGTGTTGGTGGGTCAGCAGTTTTGCTTTCAAATAAGCCCATGGATAGGCGTCGGGCTAAGTATAAGCTGGTCCACGTTGTGAGGACTCATTGTGGTGCTGATGATAAGGCATTTAGGTGTGTTTATCAAGAGCAGGATGATGATGGGAAAACTGGAGTTTCTTTGTCAAAGGATCTCATGGCAATTGCCGGTGGGGCTCTCAAGGCTAACATCACAACATTGGGTCCCCTTGTCCTGCCTTTAAGTGAGCAGCTTCTCTTCTTTGCTACTTTGGTTGCGAAGAAGTTGTTCAACGCAAAAGTCGAGCCTTATATCCCAGATTTCAAGCTTGCTTTTGATCATTTCTGCATACATGCTGGGGGAAGGGCCGTGATTGATGAGCTTGAGAAGAACTTGCAGCTTCTACCAGTTCATGTTGAGGCATCTCGGATGACACTACACAGGTTTGGTAACACCTCGTCTAGTTCGATCTGGTATGAGTTGGCTTATATCGAGGCAAAGGGTAGGATGCAAAAGGGAAACCGTGTCTGGCAGATTGCTTTCGGTAGTGGTTTCAAATGTAACAGTGCGGTGTGGGAGGTGGTTGAAAGTGTAAAAGCTTCTCCTCATAGTCCATGGGAAGATTGCATTGACAGGTATCCTGTGGAGGCCGTTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009611 GO:0009628 GO:0009698 GO:0009699 GO:0009922 GO:0009987 GO:0010345 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

504

Amino Acids

56.08

Weight (kDa)

8.79

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	91 - 380	1.3e-143	FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C	PF08541	397 - 477	2.5e-11	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C	PF02797	399 - 471	1.9e-09	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16280 AT4G34510
fragaria_vesca	FvH4_2g08940 FvH4_2g08940
malus_domestica	MD05G1065300.v1.1 MD10G1075000.v1.1
prunus_persica	Prupe.8G096100_v2.0.a1
pyrus_communis	pycom05g05670 pycom10g05860
rosa_chinensis	RchiOBHm_Chr2g0164781 RchiOBHm_Chr6g0264551 RchiOBHm_Chr6g0266411 RchiOBHm_Chr6g0266471 RchiOBHm_Chr6g0266501
rosa_laevigata	RLG00000014100 RLG00000014245
rosa_multiflora	Rmu_co8165060.1_g000001 Rmu_sc0000578.1_g000014 Rmu_sc0000946.1_g000023 Rmu_sc0002235.1_g000037 Rmu_sc0003605.1_g000018 Rmu_sc0003859.1_g000044 Rmu_sc0008317.1_g000012
rosa_roxburghii	Rroxscaffold_175G00431910 Rroxscaffold_7G00201710
rosa_rugosa	Rorug06G0015600
rosa_samantha	Rh2BG589600 Rh2CG560200 Rh6AG133300 Rh6AG145800 Rh6AG146600 Rh6BG130800 Rh6BG146200 Rh6BG146600 Rh6CG129000 Rh6CG142700 Rh6DG116200 Rh6DG130800 Rh6DG131300
rosa_wichuraiana	Rw0G009730 Rw2G048020 Rw6G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	514
Acc36I	ACCTGC	1 cut(s)	514
AccB7I	CCANNNNNTGG	1 cut(s)	361
AccII	CGCG	1 cut(s)	770
AciI	CCGC	5 cut(s)	482, 500, 503, 770, 1421
AclWI	GGATC	4 cut(s)	255, 268, 285, 1032
AcsI	RAATTY	1 cut(s)	750
AcuI	CTGAAG	1 cut(s)	483
AcyI	GRCGYC	1 cut(s)	901
AdeI	CACNNNGTG	1 cut(s)	931
AfaI	GTAC	3 cut(s)	656, 784, 809
AfiI	CCNNNNNNNGG	3 cut(s)	361, 445, 897
AgsI	TTSAA	8 cut(s)	161, 340, 372, 882, 1144, 1177, 1408, 1439
AjnI	CCWGG	2 cut(s)	168, 510
AjuI	GAANNNNNNNTTGG	2 cut(s)	833, 865
AluBI	AGCT	9 cut(s)	46, 196, 722, 919, 1105, 1180, 1234, 1252, 1451
AluI	AGCT	9 cut(s)	46, 196, 722, 919, 1105, 1180, 1234, 1252, 1451
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	4 cut(s)	255, 268, 285, 1032
AoxI	GGCC	4 cut(s)	324, 436, 1218, 1500
ApeKI	GCWGC	3 cut(s)	46, 1102, 1249
ApoI	RAATTY	1 cut(s)	750
Asp700I	GAANNNNTTC	1 cut(s)	1139
AspA2I	CCTAGG	1 cut(s)	439
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	5 cut(s)	175, 325, 922, 1076, 1218
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	3 cut(s)	175, 922, 1076
AvrII	CCTAGG	1 cut(s)	439
BamHI	GGATCC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	1051
BbvI	GCAGC	3 cut(s)	33, 1114, 1261
BccI	CCATC	2 cut(s)	120, 989
BceAI	ACGGC	3 cut(s)	24, 1205, 1487
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	2 cut(s)	170, 512
BciVI	GTATCC	1 cut(s)	1500
BclI	TGATCA	1 cut(s)	1189
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	3 cut(s)	440, 1314, 1510
BfuAI	ACCTGC	1 cut(s)	514
BfuI	GTATCC	1 cut(s)	1500
BglI	GCCNNNNNGGC	1 cut(s)	1046
BisI	GCNGC	5 cut(s)	47, 501, 504, 1103, 1250
BlnI	CCTAGG	1 cut(s)	439
BlsI	GCNGC	5 cut(s)	48, 502, 505, 1104, 1251
BmcAI	AGTACT	1 cut(s)	784
Bme1390I	CCNGG	3 cut(s)	170, 179, 512
Bme18I	GGWCC	3 cut(s)	175, 922, 1076
BmgT120I	GGNCC	5 cut(s)	175, 325, 922, 1076, 1218
BmiI	GGNNCC	6 cut(s)	177, 203, 262, 327, 1077, 1078
BmrFI	CCNGG	3 cut(s)	170, 179, 512
BmsI	GCATC	2 cut(s)	1283, 1350
BoxI	GACNNNNGTC	1 cut(s)	455
BpmI	CTGGAG	4 cut(s)	194, 446, 732, 1026
Bpu10I	CCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	3 cut(s)	425, 1037, 1256
BpuMI	CCSGG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	901
BsaJI	CCNNGG	6 cut(s)	168, 439, 485, 576, 891, 1466
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 445, 897
Bse118I	RCCGGY	1 cut(s)	1040
Bse1I	ACTGG	3 cut(s)	355, 1009, 1259
Bse3DI	GCAATG	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	170, 512
BseDI	CCNNGG	6 cut(s)	168, 439, 485, 576, 891, 1466
BseGI	GGATG	5 cut(s)	187, 550, 994, 1287, 1365
BseLI	CCNNNNNNNGG	3 cut(s)	361, 445, 897
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	777, 812
BseNI	ACTGG	3 cut(s)	355, 1009, 1259
BseRI	GAGGAG	1 cut(s)	1446
BseXI	GCAGC	3 cut(s)	33, 1114, 1261
BseYI	CCCAGC	1 cut(s)	1208
Bsh1236I	CGCG	1 cut(s)	770
BshFI	GGCC	4 cut(s)	326, 438, 1220, 1502
BsiSI	CCGG	3 cut(s)	50, 179, 1041
BslFI	GGGAC	3 cut(s)	398, 443, 1062
BslI	CCNNNNNNNGG	3 cut(s)	361, 445, 897
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	3 cut(s)	398, 443, 1062
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	4 cut(s)	326, 438, 1220, 1502
Bsp1286I	GDGCHC	1 cut(s)	1051
Bsp143I	GATC	9 cut(s)	147, 260, 290, 431, 547, 727, 1024, 1189, 1320
Bsp19I	CCATGG	2 cut(s)	891, 1466
BspACI	CCGC	5 cut(s)	482, 500, 503, 770, 1421
BspANI	GGCC	4 cut(s)	326, 438, 1220, 1502
BspCNI	CTCAG	2 cut(s)	778, 811
BspFNI	CGCG	1 cut(s)	770
BspLI	GGNNCC	6 cut(s)	177, 203, 262, 327, 1077, 1078
BspMI	ACCTGC	1 cut(s)	514
BspPI	GGATC	4 cut(s)	255, 268, 285, 1032
BsrDI	GCAATG	1 cut(s)	474
BsrFI	RCCGGY	1 cut(s)	1040
BsrI	ACTGG	3 cut(s)	355, 1009, 1259
BssAI	RCCGGY	1 cut(s)	1040
BssECI	CCNNGG	6 cut(s)	168, 439, 485, 576, 891, 1466
BssMI	GATC	9 cut(s)	147, 260, 290, 431, 547, 727, 1024, 1189, 1320
BssNI	GRCGYC	1 cut(s)	901
BssT1I	CCWWGG	5 cut(s)	439, 485, 576, 891, 1466
Bst2UI	CCWGG	2 cut(s)	170, 512
Bst4CI	ACNGT	6 cut(s)	67, 268, 633, 845, 1376, 1418
Bst6I	CTCTTC	1 cut(s)	1115
BstACI	GRCGYC	1 cut(s)	901
BstC8I	GCNNGC	2 cut(s)	508, 1182
BstDEI	CTNAG	4 cut(s)	735, 786, 798, 909
BstDSI	CCRYGG	2 cut(s)	891, 1466
BstEII	GGTNACC	1 cut(s)	92
BstF5I	GGATG	5 cut(s)	187, 550, 994, 1287, 1365
BstFNI	CGCG	1 cut(s)	770
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	9 cut(s)	150, 263, 293, 434, 550, 730, 1027, 1192, 1323
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	9 cut(s)	147, 260, 290, 431, 547, 727, 1024, 1189, 1320
BstMWI	GCNNNNNNNGC	2 cut(s)	1046, 1055
BstNI	CCWGG	2 cut(s)	170, 512
BstNSI	RCATGY	1 cut(s)	1208
BstPAI	GACNNNNGTC	1 cut(s)	455
BstPI	GGTNACC	1 cut(s)	92
BstSCI	CCNGG	3 cut(s)	168, 177, 510
BstUI	CGCG	1 cut(s)	770
BstV1I	GCAGC	3 cut(s)	33, 1114, 1261
BstX2I	RGATCY	3 cut(s)	260, 290, 1024
BstYI	RGATCY	3 cut(s)	260, 290, 1024
BsuI	GTATCC	1 cut(s)	1500
BsuRI	GGCC	4 cut(s)	326, 438, 1220, 1502
BtgI	CCRYGG	2 cut(s)	891, 1466
BtsCI	GGATG	5 cut(s)	187, 550, 994, 1287, 1365
BtsIMutI	CAGTG	2 cut(s)	629, 1423
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	508, 1182
CfoI	GCGC	1 cut(s)	417
Cfr10I	RCCGGY	1 cut(s)	1040
Cfr13I	GGNCC	5 cut(s)	175, 325, 922, 1076, 1218
CseI	GACGC	1 cut(s)	890
Csp6I	GTAC	3 cut(s)	655, 783, 808
CviAII	CATG	5 cut(s)	892, 1030, 1205, 1265, 1467
CviQI	GTAC	3 cut(s)	655, 783, 808
DdeI	CTNAG	4 cut(s)	735, 786, 798, 909
DpnI	GATC	9 cut(s)	149, 262, 292, 433, 549, 729, 1026, 1191, 1322
DpnII	GATC	9 cut(s)	147, 260, 290, 431, 547, 727, 1024, 1189, 1320
DraIII	CACNNNGTG	1 cut(s)	931
Eam1104I	CTCTTC	1 cut(s)	1115
EarI	CTCTTC	1 cut(s)	1115
EciI	GGCGGA	1 cut(s)	471
Eco130I	CCWWGG	5 cut(s)	439, 485, 576, 891, 1466
Eco24I	GRGCYC	1 cut(s)	1051
Eco32I	GATATC	1 cut(s)	492
Eco47I	GGWCC	3 cut(s)	175, 922, 1076
Eco57I	CTGAAG	1 cut(s)	483
Eco91I	GGTNACC	1 cut(s)	92
EcoO109I	RGGNCCY	2 cut(s)	325, 1076
EcoO65I	GGTNACC	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	168, 510
EcoRV	GATATC	1 cut(s)	492
EcoT14I	CCWWGG	5 cut(s)	439, 485, 576, 891, 1466
EcoT38I	GRGCYC	1 cut(s)	1051
ErhI	CCWWGG	5 cut(s)	439, 485, 576, 891, 1466
FaeI	CATG	5 cut(s)	895, 1033, 1208, 1268, 1470
FaqI	GGGAC	3 cut(s)	398, 443, 1062
FatI	CATG	5 cut(s)	891, 1029, 1204, 1264, 1466
FbaI	TGATCA	1 cut(s)	1189
Fnu4HI	GCNGC	5 cut(s)	47, 501, 504, 1103, 1250
FokI	GGATG	5 cut(s)	194, 557, 1001, 1294, 1372
FriOI	GRGCYC	1 cut(s)	1051
Fsp4HI	GCNGC	5 cut(s)	47, 501, 504, 1103, 1250
FspBI	CTAG	3 cut(s)	440, 1314, 1510
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	5 cut(s)	47, 501, 504, 1103, 1250
GsaI	CCCAGC	1 cut(s)	1212
GsuI	CTGGAG	4 cut(s)	194, 446, 732, 1026
HaeIII	GGCC	4 cut(s)	326, 438, 1220, 1502
HapII	CCGG	3 cut(s)	50, 179, 1041
HgaI	GACGC	1 cut(s)	890
HhaI	GCGC	1 cut(s)	417
Hin1I	GRCGYC	1 cut(s)	901
Hin1II	CATG	5 cut(s)	895, 1033, 1208, 1268, 1470
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HindIII	AAGCTT	2 cut(s)	1178, 1449
HinfI	GANTC	3 cut(s)	121, 421, 937
HpaII	CCGG	3 cut(s)	50, 179, 1041
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	5 cut(s)	70, 175, 298, 307, 925
Hpy188I	TCNGA	5 cut(s)	15, 36, 288, 801, 1281
Hpy188III	TCNNGA	4 cut(s)	118, 211, 425, 980
Hpy8I	GTNNAC	5 cut(s)	70, 175, 298, 307, 925
Hpy99I	CGWCG	2 cut(s)	227, 906
HpyAV	CCTTC	2 cut(s)	636, 1209
HpyCH4III	ACNGT	6 cut(s)	67, 268, 633, 845, 1376, 1418
HpyCH4IV	ACGT	1 cut(s)	927
HpyCH4V	TGCA	9 cut(s)	6, 61, 539, 563, 748, 1200, 1249, 1363, 1479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1046, 1055
HpyF3I	CTNAG	4 cut(s)	735, 786, 798, 909
HpySE526I	ACGT	1 cut(s)	927
Hsp92I	GRCGYC	1 cut(s)	901
Hsp92II	CATG	5 cut(s)	895, 1033, 1208, 1268, 1470
HspAI	GCGC	1 cut(s)	415
KflI	GGGWCCC	1 cut(s)	1076
Ksp22I	TGATCA	1 cut(s)	1189
Kzo9I	GATC	9 cut(s)	147, 260, 290, 431, 547, 727, 1024, 1189, 1320
LmnI	GCTCC	3 cut(s)	207, 364, 427
Lsp1109I	GCAGC	3 cut(s)	33, 1114, 1261
LweI	GCATC	2 cut(s)	1283, 1350
MaeI	CTAG	3 cut(s)	440, 1314, 1510
MaeII	ACGT	1 cut(s)	927
MaeIII	GTNAC	6 cut(s)	92, 317, 330, 1301, 1412, 1504
MalI	GATC	9 cut(s)	149, 262, 292, 433, 549, 729, 1026, 1191, 1322
MboI	GATC	9 cut(s)	147, 260, 290, 431, 547, 727, 1024, 1189, 1320
MboII	GAAGA	4 cut(s)	1102, 1144, 1252, 1484
MfeI	CAATTG	1 cut(s)	1035
MflI	RGATCY	3 cut(s)	260, 290, 1024
MhlI	GDGCHC	1 cut(s)	1051
MluCI	AATT	7 cut(s)	86, 601, 659, 685, 750, 802, 1035
MlyI	GAGTC	2 cut(s)	115, 931
MmeI	TCCRAC	3 cut(s)	38, 229, 644
MroXI	GAANNNNTTC	1 cut(s)	1139
MseI	TTAA	5 cut(s)	570, 615, 648, 684, 1094
MslI	CAYNNNNRTG	2 cut(s)	945, 967
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	3 cut(s)	50, 179, 1041
MspR9I	CCNGG	3 cut(s)	170, 179, 512
MunI	CAATTG	1 cut(s)	1035
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	2 cut(s)	170, 512
MvnI	CGCG	1 cut(s)	770
MwoI	GCNNNNNNNGC	2 cut(s)	1046, 1055
NciI	CCSGG	1 cut(s)	179
NcoI	CCATGG	2 cut(s)	891, 1466
NdeII	GATC	9 cut(s)	147, 260, 290, 431, 547, 727, 1024, 1189, 1320
NlaIII	CATG	5 cut(s)	895, 1033, 1208, 1268, 1470
NlaIV	GGNNCC	6 cut(s)	177, 203, 262, 327, 1077, 1078
NmuCI	GTSAC	1 cut(s)	330
NspI	RCATGY	1 cut(s)	1208
PaqCI	CACCTGC	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	2 cut(s)	1152, 1316
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	1139
PfeI	GAWTC	1 cut(s)	421
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	5 cut(s)	48, 502, 505, 1104, 1251
PleI	GAGTC	2 cut(s)	115, 931
PpsI	GAGTC	2 cut(s)	115, 931
PpuMI	RGGWCCY	1 cut(s)	1076
PshAI	GACNNNNGTC	1 cut(s)	455
Psp5II	RGGWCCY	1 cut(s)	1076
Psp6I	CCWGG	2 cut(s)	168, 510
PspEI	GGTNACC	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	1208
PspGI	CCWGG	2 cut(s)	168, 510
PspN4I	GGNNCC	6 cut(s)	177, 203, 262, 327, 1077, 1078
PspPI	GGNCC	5 cut(s)	175, 325, 922, 1076, 1218
PspPPI	RGGWCCY	1 cut(s)	1076
PsuI	RGATCY	3 cut(s)	260, 290, 1024
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	3 cut(s)	656, 784, 809
RsaNI	GTAC	3 cut(s)	655, 783, 808
RseI	CAYNNNNRTG	2 cut(s)	945, 967
SaqAI	TTAA	5 cut(s)	570, 615, 648, 684, 1094
SatI	GCNGC	5 cut(s)	47, 501, 504, 1103, 1250
Sau3AI	GATC	9 cut(s)	147, 260, 290, 431, 547, 727, 1024, 1189, 1320
Sau96I	GGNCC	5 cut(s)	175, 325, 922, 1076, 1218
ScaI	AGTACT	1 cut(s)	784
SchI	GAGTC	2 cut(s)	115, 931
ScrFI	CCNGG	3 cut(s)	170, 179, 512
SduI	GDGCHC	1 cut(s)	1051
SfaNI	GCATC	2 cut(s)	1283, 1350
SinI	GGWCC	3 cut(s)	175, 922, 1076
SmiMI	CAYNNNNRTG	2 cut(s)	945, 967
SmlI	CTYRAG	3 cut(s)	404, 1052, 1235
SmoI	CTYRAG	3 cut(s)	404, 1052, 1235
Sse9I	AATT	7 cut(s)	86, 601, 659, 685, 750, 802, 1035
SsiI	CCGC	5 cut(s)	482, 500, 503, 770, 1421
SspI	AATATT	2 cut(s)	673, 793
SspMI	CTAG	3 cut(s)	440, 1314, 1510
StyD4I	CCNGG	3 cut(s)	168, 177, 510
StyI	CCWWGG	5 cut(s)	439, 485, 576, 891, 1466
TaaI	ACNGT	6 cut(s)	67, 268, 633, 845, 1376, 1418
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	5 cut(s)	74, 390, 1155, 1319, 1344
TasI	AATT	7 cut(s)	86, 601, 659, 685, 750, 802, 1035
TatI	WGTACW	2 cut(s)	654, 782
TauI	GCSGC	2 cut(s)	503, 506
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	5 cut(s)	570, 615, 648, 684, 1094
Tru9I	TTAA	5 cut(s)	570, 615, 648, 684, 1094
TscAI	CASTG	2 cut(s)	636, 1423
TseFI	GTSAC	1 cut(s)	330
TseI	GCWGC	3 cut(s)	46, 1102, 1249
Tsp45I	GTSAC	1 cut(s)	330
TspDTI	ATGAA	3 cut(s)	485, 743, 1253
TspGWI	ACGGA	2 cut(s)	283, 842
TspRI	CASTG	2 cut(s)	636, 1423
Van91I	CCANNNNNTGG	1 cut(s)	361
VpaK11BI	GGWCC	3 cut(s)	175, 922, 1076
XapI	RAATTY	1 cut(s)	750
XceI	RCATGY	1 cut(s)	1208
XmaJI	CCTAGG	1 cut(s)	439
XmnI	GAANNNNTTC	1 cut(s)	1139
XspI	CTAG	3 cut(s)	440, 1314, 1510
ZrmI	AGTACT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.