Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002307

Physical Location & Seq

Genomic Coordinates Reverse (-)

23604955 .. 23607748

Gene Structure 2794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG146600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAGTATGTGAAGTTGGCTTCCCATTTCTTGACAGCCAACCTCTTGAAACTCTTGTTAATTCCTGTAATAGCAGTCATTGTAATTGAAGCCTCTCAGATGAATCTAGATCACATTCATCAGCTCCGACTCCAACTCCATTACAATCTGGTTAGTGTCATCACTAGCTCTGCTATTCTTGTTTTGGCTTCCACCATTTACATTATGACTCGACCCAGATCCGTTTACCTCGTAGACTACTTGTGCTATAAGCCCCCTAACAATTGGAAAGTGAAATACCAGAAGTTTATTAATCACTCCAGATTGATCGGGGCCTTTGATGAGTCCTCGCTCGAGTTTCAGCACATGATTCTTAAGCGGTCTGGCCTTGGACAGGAGACCTATCTCCCTGAAGCAATGCTTTCCATTCCTCGGAGGCTATCAATGGCGGCAGCGCGTGAGGAGGCGGAGCAGGTGATTTTTGGAGCCTTGGATAATCTATTTGCAAATACTAATGTCAATCCTAAGGACATTGGGATTCTTGTTATGAATTCTAGTCTGTTTAATCCAACTCCTTCATTGTCTTCTATGATTGTTAATAAGTACAAATTGAGGGGAAGTATTAAGAGTTATAATTTGGGAGGTATGGGATGTAGTGCTGGAGTTATAGCTGTAGATCTTGCTAAGCACCTGTTGCAAGTTCAAAAGAACACTTATGCAGTTGTTGTCAGCACTGAGAATGTTACTCAAAATTGGTACCTTGGGAACAAGAAATCCATGTTGGAACAAAATTGTTTGTTTCGTGTGGGTGGGTCTGCGGTTTTGCTCTCGAACAAGTTATCTGATAGGTGTAGGGCTAAGTACAAGCTTGTGCGATGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009611 GO:0009628 GO:0009698 GO:0009699 GO:0009922 GO:0009987 GO:0010345 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

287

Amino Acids

32.23

Weight (kDa)

9.69

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	67 - 285	7.3e-102	FAE1/Type III polyketide synthase-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16280 AT4G34510
fragaria_vesca	FvH4_2g08940 FvH4_2g08940
malus_domestica	MD05G1065300.v1.1 MD10G1075000.v1.1
prunus_persica	Prupe.8G096100_v2.0.a1
pyrus_communis	pycom05g05670 pycom10g05860
rosa_chinensis	RchiOBHm_Chr2g0164781 RchiOBHm_Chr6g0264551 RchiOBHm_Chr6g0266411 RchiOBHm_Chr6g0266471 RchiOBHm_Chr6g0266501
rosa_laevigata	RLG00000014100 RLG00000014245
rosa_multiflora	Rmu_co8165060.1_g000001 Rmu_sc0000578.1_g000014 Rmu_sc0000946.1_g000023 Rmu_sc0002235.1_g000037 Rmu_sc0003605.1_g000018 Rmu_sc0003859.1_g000044 Rmu_sc0008317.1_g000012
rosa_roxburghii	Rroxscaffold_175G00431910 Rroxscaffold_7G00201710
rosa_rugosa	Rorug06G0015600
rosa_samantha	Rh2BG589600 Rh2CG560200 Rh6AG133300 Rh6AG145800 Rh6AG146600 Rh6BG130800 Rh6BG146200 Rh6BG146600 Rh6CG129000 Rh6CG142700 Rh6DG116200 Rh6DG130800 Rh6DG131300
rosa_wichuraiana	Rw0G009730 Rw2G048020 Rw6G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AarI	CACCTGC	1 cut(s)	442
Acc36I	ACCTGC	1 cut(s)	442
Acc65I	GGTACC	1 cut(s)	735
AccB1I	GGYRCC	1 cut(s)	735
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	436
AciI	CCGC	4 cut(s)	358, 428, 446, 797
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	3 cut(s)	584, 737, 842
AfiI	CCNNNNNNNGG	2 cut(s)	373, 411
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	49, 89, 683
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
AloI	GAACNNNNNNTCC	2 cut(s)	737, 769
AluBI	AGCT	4 cut(s)	124, 168, 650, 847
AluI	AGCT	4 cut(s)	124, 168, 650, 847
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	2 cut(s)	312, 364
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	529
AseI	ATTAAT	1 cut(s)	291
Asp718I	GGTACC	1 cut(s)	735
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	466
AvaI	CYCGRG	1 cut(s)	332
AxyI	CCTNAGG	1 cut(s)	504
BanI	GGYRCC	1 cut(s)	735
BbsI	GAAGAC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	3 cut(s)	107, 165, 534
BfmI	CTRYAG	1 cut(s)	651
BfrI	CTTAAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	2 cut(s)	429, 432
BlpI	GCTNAGC	1 cut(s)	663
BlsI	GCNGC	2 cut(s)	430, 433
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	3 cut(s)	313, 466, 737
BpiI	GAAGAC	1 cut(s)	555
BpmI	CTGGAG	2 cut(s)	283, 660
Bpu1102I	GCTNAGC	1 cut(s)	663
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	4 cut(s)	367, 410, 468, 739
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 411
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	402
BseDI	CCNNGG	4 cut(s)	367, 410, 468, 739
BseGI	GGATG	1 cut(s)	635
BseLI	CCNNNNNNNGG	2 cut(s)	373, 411
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	110, 705
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	436
BshFI	GGCC	2 cut(s)	314, 366
BshNI	GGYRCC	1 cut(s)	735
BsiHKCI	CYCGRG	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	373, 411
BsmAI	GTCTC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	314, 366
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	109, 218, 306, 655
Bsp1720I	GCTNAGC	1 cut(s)	663
BspACI	CCGC	4 cut(s)	358, 428, 446, 797
BspANI	GGCC	2 cut(s)	314, 366
BspCNI	CTCAG	2 cut(s)	109, 706
BspFNI	CGCG	1 cut(s)	436
BspLI	GGNNCC	3 cut(s)	313, 466, 737
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	735
BspTI	CTTAAG	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	402
BssECI	CCNNGG	4 cut(s)	367, 410, 468, 739
BssMI	GATC	4 cut(s)	109, 218, 306, 655
BssT1I	CCWWGG	3 cut(s)	367, 468, 739
BstAFI	CTTAAG	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	673
BstDEI	CTNAG	5 cut(s)	96, 504, 663, 714, 837
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	635
BstFNI	CGCG	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	4 cut(s)	112, 221, 309, 658
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	4 cut(s)	109, 218, 306, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstSFI	CTRYAG	1 cut(s)	651
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	443
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	2 cut(s)	218, 655
BstYI	RGATCY	2 cut(s)	218, 655
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	314, 366
BtsCI	GGATG	1 cut(s)	635
BtsIMutI	CAGTG	1 cut(s)	711
BveI	ACCTGC	1 cut(s)	442
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	312
Csp6I	GTAC	3 cut(s)	583, 736, 841
CviAII	CATG	2 cut(s)	346, 757
CviQI	GTAC	3 cut(s)	583, 736, 841
DdeI	CTNAG	5 cut(s)	96, 504, 663, 714, 837
DpnI	GATC	4 cut(s)	111, 220, 308, 657
DpnII	GATC	4 cut(s)	109, 218, 306, 655
EciI	GGCGGA	1 cut(s)	461
Eco130I	CCWWGG	3 cut(s)	367, 468, 739
Eco31I	GGTCTC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	411
Eco81I	CCTNAGG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	332
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	312
EcoRI	GAATTC	1 cut(s)	529
EcoT14I	CCWWGG	3 cut(s)	367, 468, 739
ErhI	CCWWGG	3 cut(s)	367, 468, 739
FaeI	CATG	2 cut(s)	349, 760
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	2 cut(s)	345, 756
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	429, 432
FokI	GGATG	1 cut(s)	642
Fsp4HI	GCNGC	2 cut(s)	429, 432
FspBI	CTAG	3 cut(s)	107, 165, 534
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	2 cut(s)	429, 432
GsuI	CTGGAG	2 cut(s)	283, 660
HaeIII	GGCC	2 cut(s)	314, 366
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	2 cut(s)	349, 760
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HindIII	AAGCTT	1 cut(s)	845
HinfI	GANTC	6 cut(s)	103, 129, 208, 323, 349, 517
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	2 cut(s)	226, 235
Hpy188I	TCNGA	4 cut(s)	99, 128, 414, 823
Hpy188III	TCNNGA	5 cut(s)	31, 46, 107, 300, 808
Hpy8I	GTNNAC	2 cut(s)	226, 235
HpyAV	CCTTC	1 cut(s)	564
HpyCH4V	TGCA	3 cut(s)	485, 676, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	5 cut(s)	96, 504, 663, 714, 837
Hsp92II	CATG	2 cut(s)	349, 760
HspAI	GCGC	1 cut(s)	434
KpnI	GGTACC	1 cut(s)	739
Kzo9I	GATC	4 cut(s)	109, 218, 306, 655
LmnI	GCTCC	3 cut(s)	129, 448, 464
Lsp1109I	GCAGC	1 cut(s)	443
MaeI	CTAG	3 cut(s)	107, 165, 534
MaeIII	GTNAC	1 cut(s)	721
MalI	GATC	4 cut(s)	111, 220, 308, 657
MboI	GATC	4 cut(s)	109, 218, 306, 655
MboII	GAAGA	1 cut(s)	555
MfeI	CAATTG	1 cut(s)	262
MflI	RGATCY	2 cut(s)	218, 655
MluCI	AATT	8 cut(s)	60, 84, 262, 529, 587, 613, 730, 769
MlyI	GAGTC	3 cut(s)	123, 202, 332
MmeI	TCCRAC	4 cut(s)	151, 157, 572, 741
MseI	TTAA	6 cut(s)	59, 291, 354, 543, 576, 603
MspCI	CTTAAG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	1 cut(s)	673
NdeII	GATC	4 cut(s)	109, 218, 306, 655
NlaIII	CATG	2 cut(s)	349, 760
NlaIV	GGNNCC	3 cut(s)	313, 466, 737
PaeR7I	CTCGAG	1 cut(s)	332
PaqCI	CACCTGC	1 cut(s)	442
PfeI	GAWTC	3 cut(s)	103, 349, 517
PkrI	GCNGC	2 cut(s)	430, 433
PleI	GAGTC	3 cut(s)	123, 202, 331
PpsI	GAGTC	3 cut(s)	123, 202, 331
PshBI	ATTAAT	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	612
PspN4I	GGNNCC	3 cut(s)	313, 466, 737
PspPI	GGNCC	1 cut(s)	312
PspXI	VCTCGAGB	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	218, 655
RsaI	GTAC	3 cut(s)	584, 737, 842
RsaNI	GTAC	3 cut(s)	583, 736, 841
SaqAI	TTAA	6 cut(s)	59, 291, 354, 543, 576, 603
SatI	GCNGC	2 cut(s)	429, 432
Sau3AI	GATC	4 cut(s)	109, 218, 306, 655
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	3 cut(s)	123, 202, 332
SfcI	CTRYAG	1 cut(s)	651
Sfr274I	CTCGAG	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	332
SmlI	CTYRAG	2 cut(s)	332, 353
SmoI	CTYRAG	2 cut(s)	332, 353
Sse9I	AATT	8 cut(s)	60, 84, 262, 529, 587, 613, 730, 769
SsiI	CCGC	4 cut(s)	358, 428, 446, 797
SspMI	CTAG	3 cut(s)	107, 165, 534
StyI	CCWWGG	3 cut(s)	367, 468, 739
TaqI	TCGA	3 cut(s)	211, 333, 809
TasI	AATT	8 cut(s)	60, 84, 262, 529, 587, 613, 730, 769
TatI	WGTACW	2 cut(s)	582, 840
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	3 cut(s)	103, 349, 517
Tru1I	TTAA	6 cut(s)	59, 291, 354, 543, 576, 603
Tru9I	TTAA	6 cut(s)	59, 291, 354, 543, 576, 603
TscAI	CASTG	1 cut(s)	718
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	5 cut(s)	17, 107, 116, 542, 546
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	718
Vha464I	CTTAAG	1 cut(s)	353
VspI	ATTAAT	1 cut(s)	291
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	1 cut(s)	529
XbaI	TCTAGA	1 cut(s)	106
XhoI	CTCGAG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	3 cut(s)	107, 165, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.