pycom05g05670

3-ketoacyl-CoA synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
7023723 .. 7024958
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g05670.1

Sequence Viewer

Length: 1236 bp
ATGACCCGTCCGAGATCCGTCTACCTTGTGGACTATTCGTGTTACAAAGCCCCGCCGCATTTGAAAGTGAGATACCACCGGTTTATGGAGCATTCAAAGTTGATAGGGGACTTCGATGAGTCCTCGCTTGAGTTCCAGCGCAAGATTCTGGAGCGATCTGGCCTCGGAGAGGAAACTTATGTCCCTGAAGCAATGAATTACATTCCACCAAGGATATCAATGGCGGCGGCTCGCGAGGAGGCAGAGCAGGTGATTTTTGGTGCATTGGATGATCTGTTTGCTAATGCAAATGTTAAGCCTAAGGACATTGGTATTCTTGTTGTGAATTGTAGTTTGTTTAATCCAACTCCTTCACTGTCTGCTATGGTTGTTAATAAGTACAAATTGAAGGGGAATATTAGAAGTTTTAATTTAGGGGGTATGGGGTGTAGTGCTGGAGTTATAGCTGTTGATCTTGCTAAGGATATGTTGCAAATTCATAGGAATACATACGCGGTTGTTGTTAGTACTGAGAATATTACTCAGAATTGGTACTTTGGGAACAAGAAATCCATGCTGATACCCAACTGTTTGTTCCGTGTTGGTGGGTCAGCAGTTTTGCTTTCAAATAAGTCCATGGATAGGCGTCGGGCTAAGTATAAGCTGGTCCACGTTGTGAGGACTCATTGTGGTGCTGATGATAAGGCCTTTAGGTGTGTTTATCAAGAGCAGGATGATGATGGGAAAACTGGGGTTTCTTTGTCCAAGGATCTCATGGCAATTGCCGGTGGGGCTCTCAAGGCTAACATCACAACATTGGGTCCCCTTGTCCTGTCTTTAAGTGAGCAGCTTCTCTTCTTTGCTACTTTGGTTGCGAAGAAGTTGTTCAACGCAAAAGTCGAGCCTTATATCCCAGATTTCAAGCTTGCTTTTGATCATTTCTGCATACATGCTGGGGGAAGGGCCGTGATTGATGAGCTTGAGAAGAACTTGCAGCTTCTACCAGTTCATGTTGAGGCGTCTCGGATGACACTCCACAGGTTTGGTAACACCTCGTCTAGTTCGATCTGGTATGAGTTGGCTTATATCGAGGCAAAGGGGAGGATGCAAAAGGGAAACCGTGTCTGGCAGATTGCTTTCGGCAGTGGTTTCAAATGTAACAGTGCGGTGTGGGAGGTTCTTCAAAGTGTAAAAGCTTCTCCTCATAGTCCATGGGAAGATTGCATTGACAGGTATCCTGTGGAGGCCGTTGCCTAG

Protein Analysis

412

Amino Acids

45.93

Weight (kDa)

8.89

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 1 - 288 1.1e-142 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 305 - 385 1.8e-11 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 307 - 378 1.4e-09 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 238
Acc36I ACCTGC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 21
AccII CGCG 2 cut(s) 234, 494
AciI CCGC 6 cut(s) 53, 56, 224, 227, 494, 1145
AclWI GGATC 2 cut(s) 9, 756
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 207
AcyI GRCGYC 2 cut(s) 625, 998
AdeI CACNNNGTG 1 cut(s) 655
AfaI GTAC 3 cut(s) 380, 508, 533
AfiI CCNNNNNNNGG 3 cut(s) 85, 169, 621
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 8 cut(s) 64, 96, 388, 606, 868, 901, 1132, 1163
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
AluBI AGCT 7 cut(s) 446, 643, 829, 904, 958, 976, 1175
AluI AGCT 7 cut(s) 446, 643, 829, 904, 958, 976, 1175
Alw26I GTCTC 1 cut(s) 1005
AlwI GGATC 2 cut(s) 9, 756
AoxI GGCC 4 cut(s) 160, 684, 942, 1224
ApeKI GCWGC 2 cut(s) 826, 973
ApoI RAATTY 1 cut(s) 474
AsiGI ACCGGT 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 863
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 3 cut(s) 646, 800, 942
AsuHPI GGTGA 1 cut(s) 262
AvaII GGWCC 2 cut(s) 646, 800
AxyI CCTNAGG 1 cut(s) 300
BanII GRGCYC 1 cut(s) 775
BbvI GCAGC 2 cut(s) 838, 985
BccI CCATC 1 cut(s) 713
BceAI ACGGC 2 cut(s) 929, 1211
BciVI GTATCC 1 cut(s) 1224
BclI TGATCA 1 cut(s) 913
BcoDI GTCTC 1 cut(s) 1005
BfaI CTAG 2 cut(s) 1038, 1234
BfuAI ACCTGC 1 cut(s) 238
BfuI GTATCC 1 cut(s) 1224
BglI GCCNNNNNGGC 1 cut(s) 770
BisI GCNGC 5 cut(s) 56, 225, 228, 827, 974
BlsI GCNGC 5 cut(s) 57, 226, 229, 828, 975
BmcAI AGTACT 1 cut(s) 508
Bme18I GGWCC 2 cut(s) 646, 800
BmgT120I GGNCC 3 cut(s) 646, 800, 942
BmiI GGNNCC 2 cut(s) 801, 802
BmrI ACTGGG 1 cut(s) 738
BmsI GCATC 1 cut(s) 1074
BmuI ACTGGG 1 cut(s) 738
BpmI CTGGAG 2 cut(s) 170, 456
Bpu10I CCTNAGC 1 cut(s) 459
BpuEI CTTGAG 3 cut(s) 149, 761, 980
BsaHI GRCGYC 2 cut(s) 625, 998
BsaJI CCNNGG 5 cut(s) 163, 209, 615, 744, 1190
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 169, 621
Bse118I RCCGGY 2 cut(s) 78, 764
Bse1I ACTGG 2 cut(s) 733, 983
Bse21I CCTNAGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 198
BseDI CCNNGG 5 cut(s) 163, 209, 615, 744, 1190
BseGI GGATG 4 cut(s) 274, 718, 1011, 1089
BseLI CCNNNNNNNGG 3 cut(s) 85, 169, 621
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 501, 536
BseNI ACTGG 2 cut(s) 733, 983
BseRI GAGGAG 2 cut(s) 251, 1170
BseXI GCAGC 2 cut(s) 838, 985
BseYI CCCAGC 1 cut(s) 932
Bsh1236I CGCG 2 cut(s) 234, 494
BshFI GGCC 4 cut(s) 162, 686, 944, 1226
BshTI ACCGGT 1 cut(s) 78
BsiSI CCGG 2 cut(s) 79, 765
BslFI GGGAC 3 cut(s) 122, 167, 786
BslI CCNNNNNNNGG 3 cut(s) 85, 169, 621
BsmAI GTCTC 1 cut(s) 1005
BsmBI CGTCTC 1 cut(s) 1005
BsmFI GGGAC 3 cut(s) 122, 167, 786
BsmI GAATGC 1 cut(s) 91
BsnI GGCC 4 cut(s) 162, 686, 944, 1226
Bsp1286I GDGCHC 1 cut(s) 775
Bsp143I GATC 7 cut(s) 14, 155, 271, 451, 748, 913, 1044
Bsp19I CCATGG 2 cut(s) 615, 1190
Bsp68I TCGCGA 1 cut(s) 234
BspACI CCGC 6 cut(s) 53, 56, 224, 227, 494, 1145
BspANI GGCC 4 cut(s) 162, 686, 944, 1226
BspCNI CTCAG 2 cut(s) 502, 535
BspFNI CGCG 2 cut(s) 234, 494
BspLI GGNNCC 2 cut(s) 801, 802
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 2 cut(s) 9, 756
BsrDI GCAATG 1 cut(s) 198
BsrFI RCCGGY 2 cut(s) 78, 764
BsrI ACTGG 2 cut(s) 733, 983
BssAI RCCGGY 2 cut(s) 78, 764
BssECI CCNNGG 5 cut(s) 163, 209, 615, 744, 1190
BssMI GATC 7 cut(s) 14, 155, 271, 451, 748, 913, 1044
BssNI GRCGYC 2 cut(s) 625, 998
BssT1I CCWWGG 4 cut(s) 209, 615, 744, 1190
Bst4CI ACNGT 4 cut(s) 357, 569, 1100, 1142
Bst6I CTCTTC 1 cut(s) 839
BstACI GRCGYC 2 cut(s) 625, 998
BstC8I GCNNGC 2 cut(s) 232, 906
BstDEI CTNAG 5 cut(s) 300, 459, 510, 522, 633
BstDSI CCRYGG 2 cut(s) 615, 1190
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 4 cut(s) 274, 718, 1011, 1089
BstFNI CGCG 2 cut(s) 234, 494
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 7 cut(s) 17, 158, 274, 454, 751, 916, 1047
BstMAI GTCTC 1 cut(s) 1005
BstMBI GATC 7 cut(s) 14, 155, 271, 451, 748, 913, 1044
BstMWI GCNNNNNNNGC 2 cut(s) 770, 779
BstNSI RCATGY 1 cut(s) 932
BstUI CGCG 2 cut(s) 234, 494
BstV1I GCAGC 2 cut(s) 838, 985
BstX2I RGATCY 2 cut(s) 14, 748
BstXI CCANNNNNNTGG 1 cut(s) 1022
BstYI RGATCY 2 cut(s) 14, 748
Bsu36I CCTNAGG 1 cut(s) 300
BsuI GTATCC 1 cut(s) 1224
BsuRI GGCC 4 cut(s) 162, 686, 944, 1226
BtgI CCRYGG 2 cut(s) 615, 1190
BtsCI GGATG 4 cut(s) 274, 718, 1011, 1089
BtsI GCAGTG 1 cut(s) 1129
BtsIMutI CAGTG 3 cut(s) 353, 1129, 1147
BtuMI TCGCGA 1 cut(s) 234
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 232, 906
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 2 cut(s) 78, 764
Cfr13I GGNCC 3 cut(s) 646, 800, 942
CseI GACGC 2 cut(s) 614, 987
Csp6I GTAC 3 cut(s) 379, 507, 532
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 6 cut(s) 553, 616, 754, 929, 989, 1191
CviQI GTAC 3 cut(s) 379, 507, 532
DdeI CTNAG 5 cut(s) 300, 459, 510, 522, 633
DpnI GATC 7 cut(s) 16, 157, 273, 453, 750, 915, 1046
DpnII GATC 7 cut(s) 14, 155, 271, 451, 748, 913, 1044
DraIII CACNNNGTG 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 839
EarI CTCTTC 1 cut(s) 839
Eco130I CCWWGG 4 cut(s) 209, 615, 744, 1190
Eco147I AGGCCT 1 cut(s) 686
Eco24I GRGCYC 1 cut(s) 775
Eco32I GATATC 1 cut(s) 216
Eco47I GGWCC 2 cut(s) 646, 800
Eco57I CTGAAG 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 300
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 800
EcoRV GATATC 1 cut(s) 216
EcoT14I CCWWGG 4 cut(s) 209, 615, 744, 1190
EcoT38I GRGCYC 1 cut(s) 775
ErhI CCWWGG 4 cut(s) 209, 615, 744, 1190
Esp3I CGTCTC 1 cut(s) 1005
FaeI CATG 6 cut(s) 556, 619, 757, 932, 992, 1194
FaqI GGGAC 3 cut(s) 122, 167, 786
FatI CATG 6 cut(s) 552, 615, 753, 928, 988, 1190
FauI CCCGC 1 cut(s) 60
FbaI TGATCA 1 cut(s) 913
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 5 cut(s) 56, 225, 228, 827, 974
FokI GGATG 4 cut(s) 281, 725, 1018, 1096
FriOI GRGCYC 1 cut(s) 775
Fsp4HI GCNGC 5 cut(s) 56, 225, 228, 827, 974
FspBI CTAG 2 cut(s) 1038, 1234
GlaI GCGC 1 cut(s) 140
GluI GCNGC 5 cut(s) 56, 225, 228, 827, 974
GsaI CCCAGC 1 cut(s) 936
GsuI CTGGAG 2 cut(s) 170, 456
HaeIII GGCC 4 cut(s) 162, 686, 944, 1226
HapII CCGG 2 cut(s) 79, 765
HgaI GACGC 2 cut(s) 614, 987
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 2 cut(s) 625, 998
Hin1II CATG 6 cut(s) 556, 619, 757, 932, 992, 1194
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HindIII AAGCTT 2 cut(s) 902, 1173
HinfI GANTC 3 cut(s) 119, 145, 661
HpaII CCGG 2 cut(s) 79, 765
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 3 cut(s) 22, 31, 649
Hpy188I TCNGA 4 cut(s) 12, 167, 525, 1005
Hpy188III TCNNGA 3 cut(s) 149, 233, 704
Hpy8I GTNNAC 3 cut(s) 22, 31, 649
Hpy99I CGWCG 1 cut(s) 630
HpyAV CCTTC 3 cut(s) 360, 382, 933
HpyCH4III ACNGT 4 cut(s) 357, 569, 1100, 1142
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 7 cut(s) 263, 287, 472, 924, 973, 1087, 1203
HpyF10VI GCNNNNNNNGC 2 cut(s) 770, 779
HpyF3I CTNAG 5 cut(s) 300, 459, 510, 522, 633
HpySE526I ACGT 1 cut(s) 651
Hsp92I GRCGYC 2 cut(s) 625, 998
Hsp92II CATG 6 cut(s) 556, 619, 757, 932, 992, 1194
HspAI GCGC 1 cut(s) 139
KflI GGGWCCC 1 cut(s) 800
Ksp22I TGATCA 1 cut(s) 913
Kzo9I GATC 7 cut(s) 14, 155, 271, 451, 748, 913, 1044
LmnI GCTCC 2 cut(s) 88, 151
Lsp1109I GCAGC 2 cut(s) 838, 985
LweI GCATC 1 cut(s) 1074
MaeI CTAG 2 cut(s) 1038, 1234
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 3 cut(s) 41, 1025, 1136
MalI GATC 7 cut(s) 16, 157, 273, 453, 750, 915, 1046
MboI GATC 7 cut(s) 14, 155, 271, 451, 748, 913, 1044
MboII GAAGA 5 cut(s) 826, 868, 976, 1151, 1208
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 2 cut(s) 14, 748
MhlI GDGCHC 1 cut(s) 775
MluCI AATT 7 cut(s) 196, 325, 383, 409, 474, 526, 759
MlyI GAGTC 2 cut(s) 128, 655
MmeI TCCRAC 1 cut(s) 368
MroXI GAANNNNTTC 1 cut(s) 863
MseI TTAA 5 cut(s) 294, 339, 372, 408, 818
MslI CAYNNNNRTG 1 cut(s) 669
MspI CCGG 2 cut(s) 79, 765
MunI CAATTG 1 cut(s) 759
Mva1269I GAATGC 1 cut(s) 91
MvnI CGCG 2 cut(s) 234, 494
MwoI GCNNNNNNNGC 2 cut(s) 770, 779
NcoI CCATGG 2 cut(s) 615, 1190
NdeII GATC 7 cut(s) 14, 155, 271, 451, 748, 913, 1044
NlaIII CATG 6 cut(s) 556, 619, 757, 932, 992, 1194
NlaIV GGNNCC 2 cut(s) 801, 802
NruI TCGCGA 1 cut(s) 234
NspI RCATGY 1 cut(s) 932
PaqCI CACCTGC 1 cut(s) 238
PceI AGGCCT 1 cut(s) 686
PcsI WCGNNNNNNNCGW 2 cut(s) 876, 1040
PctI GAATGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 863
PfeI GAWTC 1 cut(s) 145
PinAI ACCGGT 1 cut(s) 78
PkrI GCNGC 5 cut(s) 57, 226, 229, 828, 975
PleI GAGTC 2 cut(s) 127, 655
PpsI GAGTC 2 cut(s) 127, 655
PpuMI RGGWCCY 1 cut(s) 800
Psp5II RGGWCCY 1 cut(s) 800
PspFI CCCAGC 1 cut(s) 932
PspN4I GGNNCC 2 cut(s) 801, 802
PspPI GGNCC 3 cut(s) 646, 800, 942
PspPPI RGGWCCY 1 cut(s) 800
PsuI RGATCY 2 cut(s) 14, 748
RruI TCGCGA 1 cut(s) 234
RsaI GTAC 3 cut(s) 380, 508, 533
RsaNI GTAC 3 cut(s) 379, 507, 532
RseI CAYNNNNRTG 1 cut(s) 669
SaqAI TTAA 5 cut(s) 294, 339, 372, 408, 818
SatI GCNGC 5 cut(s) 56, 225, 228, 827, 974
Sau3AI GATC 7 cut(s) 14, 155, 271, 451, 748, 913, 1044
Sau96I GGNCC 3 cut(s) 646, 800, 942
ScaI AGTACT 1 cut(s) 508
SchI GAGTC 2 cut(s) 128, 655
SduI GDGCHC 1 cut(s) 775
SfaNI GCATC 1 cut(s) 1074
SinI GGWCC 2 cut(s) 646, 800
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 3 cut(s) 128, 776, 959
SmoI CTYRAG 3 cut(s) 128, 776, 959
Sse9I AATT 7 cut(s) 196, 325, 383, 409, 474, 526, 759
SseBI AGGCCT 1 cut(s) 686
SsiI CCGC 6 cut(s) 53, 56, 224, 227, 494, 1145
SspI AATATT 2 cut(s) 397, 517
SspMI CTAG 2 cut(s) 1038, 1234
StuI AGGCCT 1 cut(s) 686
StyI CCWWGG 4 cut(s) 209, 615, 744, 1190
TaaI ACNGT 4 cut(s) 357, 569, 1100, 1142
TaiI ACGT 1 cut(s) 654
TaqI TCGA 4 cut(s) 114, 879, 1043, 1068
TasI AATT 7 cut(s) 196, 325, 383, 409, 474, 526, 759
TatI WGTACW 2 cut(s) 378, 506
TauI GCSGC 3 cut(s) 58, 227, 230
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 5 cut(s) 294, 339, 372, 408, 818
Tru9I TTAA 5 cut(s) 294, 339, 372, 408, 818
TscAI CASTG 3 cut(s) 360, 1129, 1147
TseI GCWGC 2 cut(s) 826, 973
TspDTI ATGAA 3 cut(s) 209, 467, 977
TspGWI ACGGA 2 cut(s) 7, 566
TspRI CASTG 3 cut(s) 360, 1129, 1147
VpaK11BI GGWCC 2 cut(s) 646, 800
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 1 cut(s) 474
XceI RCATGY 1 cut(s) 932
XcmI CCANNNNNNNNNTGG 1 cut(s) 751
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 863
XspI CTAG 2 cut(s) 1038, 1234
ZrmI AGTACT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.