Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008317.1

Orthogroup ID

OG0002307

Physical Location & Seq

Genomic Coordinates Reverse (-)

54871 .. 56109

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008317.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

atgactcgacccagatccgtttacctcgtagactactcgtgctataagccccctaacaattggaaagtgaaataccagaagtttattaatcactccagattgatcggggcctttgatgagtcctcgctcgagtttcagcacatgattcttaagcggtctggccttggacaggagacctatctccctgaagcaatgctttccattcctcggaggctgtcaatggcggcagcgcgtgaggaggcagagcaggtgatttttggagccttggataatctatttgcaaatactaatgtcaatcctaaggacattgggattcttgttatgaattctagtctgtttaatccaactccttcattgtcttctatgattgttaataagtacaaattgaggggaagtattaagagttataatttgggaggtatgggatgtagtgctggagttatagctgtagatcttgctaagcacctgttgcaagttcaaaagaacacttatgcagttgttgtcagcactgagaatgttactcaaaattggtaccttgggaacaagaaatccatgttggtacaaaattgtttgtttcgtgtgggtgggtctgcggttttgctctcgaacaagttatctgataggtgtagggctaagtacaagcttgtgcatatcgtgagggctcatataggctctaatgataaggcatataggtgtgcttatcaagaggaggatgatgccagcaaacctggggtttcgttgtcgaaggagctcatggcgattgctggtgtagcactcaagactaatatcacagctttgctcggtcctcttgtcctacctataagcgaccagcttctcttctttgctactttccttgcagacaagttgttcaatgcgaaagtcaagccttacatcccgaatttcaaactcgttttcgatcatttctgcatccatgctggtggaaggtctgtgattaatgagcttgagaagaatttgcagcttctaccagttcatgttgaggcgtcacggatgacactccacaggtttggtaacacctcctccagctcgatttggtatgagttggcttacaccgaggcaaaagggaggatacaaaaggggaaccgtgtgtggcagattgcgctcggaagcggattcaagtgtaatagcgtagtctgggaggctctccagaaagtgaaaccttctcccaatagcccttgggaagattgcattgattggtatccagtgcaaacagttctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009611 GO:0009628 GO:0009698 GO:0009699 GO:0009922 GO:0009987 GO:0010345 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

412

Amino Acids

46.09

Weight (kDa)

9.4

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16280 AT4G34510
fragaria_vesca	FvH4_2g08940 FvH4_2g08940
malus_domestica	MD05G1065300.v1.1 MD10G1075000.v1.1
prunus_persica	Prupe.8G096100_v2.0.a1
pyrus_communis	pycom05g05670 pycom10g05860
rosa_chinensis	RchiOBHm_Chr2g0164781 RchiOBHm_Chr6g0264551 RchiOBHm_Chr6g0266411 RchiOBHm_Chr6g0266471 RchiOBHm_Chr6g0266501
rosa_laevigata	RLG00000014100 RLG00000014245
rosa_multiflora	Rmu_co8165060.1_g000001 Rmu_sc0000578.1_g000014 Rmu_sc0000946.1_g000023 Rmu_sc0002235.1_g000037 Rmu_sc0003605.1_g000018 Rmu_sc0003859.1_g000044 Rmu_sc0008317.1_g000012
rosa_roxburghii	Rroxscaffold_175G00431910 Rroxscaffold_7G00201710
rosa_rugosa	Rorug06G0015600
rosa_samantha	Rh2BG589600 Rh2CG560200 Rh6AG133300 Rh6AG145800 Rh6AG146600 Rh6BG130800 Rh6BG146200 Rh6BG146600 Rh6CG129000 Rh6CG142700 Rh6DG116200 Rh6DG130800 Rh6DG131300
rosa_wichuraiana	Rw0G009730 Rw2G048020 Rw6G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AarI	CACCTGC	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	238
Acc65I	GGTACC	1 cut(s)	531
AccB1I	GGYRCC	1 cut(s)	531
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	1 cut(s)	232
AciI	CCGC	4 cut(s)	154, 224, 593, 1128
AclWI	GGATC	1 cut(s)	9
AcsI	RAATTY	3 cut(s)	325, 898, 970
AcuI	CTGAAG	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	1001
AfaI	GTAC	4 cut(s)	380, 533, 561, 638
AfiI	CCNNNNNNNGG	2 cut(s)	169, 207
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	4 cut(s)	479, 871, 904, 1135
AjnI	CCWGG	1 cut(s)	727
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AloI	GAACNNNNNNTCC	2 cut(s)	533, 565
AluBI	AGCT	8 cut(s)	446, 643, 751, 794, 832, 961, 979, 1044
AluI	AGCT	8 cut(s)	446, 643, 751, 794, 832, 961, 979, 1044
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	9
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	108, 160
ApeKI	GCWGC	2 cut(s)	227, 976
ApoI	RAATTY	3 cut(s)	325, 898, 970
AseI	ATTAAT	2 cut(s)	87, 954
Asp718I	GGTACC	1 cut(s)	531
AspLEI	GCGC	2 cut(s)	232, 1120
AspS9I	GGNCC	2 cut(s)	108, 803
AsuHPI	GGTGA	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	803
AxyI	CCTNAGG	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	531
BanII	GRGCYC	2 cut(s)	664, 753
BauI	CACGAG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	2 cut(s)	239, 988
BciT130I	CCWGG	1 cut(s)	729
BciVI	GTATCC	2 cut(s)	1080, 1227
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	2 cut(s)	330, 1237
BfmI	CTRYAG	1 cut(s)	447
BfrI	CTTAAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	238
BfuI	GTATCC	2 cut(s)	1080, 1227
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	3 cut(s)	225, 228, 977
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	3 cut(s)	226, 229, 978
Bme1390I	CCNGG	1 cut(s)	729
Bme18I	GGWCC	1 cut(s)	803
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	108, 803
BmiI	GGNNCC	4 cut(s)	109, 262, 533, 1100
BmrFI	CCNGG	1 cut(s)	729
BmsI	GCATC	2 cut(s)	706, 936
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	4 cut(s)	79, 456, 1024, 1148
Bpu1102I	GCTNAGC	1 cut(s)	459
BpuEI	CTTGAG	2 cut(s)	761, 983
BsaBI	GATNNNNATC	1 cut(s)	1215
BsaHI	GRCGYC	1 cut(s)	1001
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	7 cut(s)	163, 206, 264, 535, 728, 1071, 1193
BsaXI	ACNNNNNCTCC	2 cut(s)	1022, 1052
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 207
Bse1I	ACTGG	2 cut(s)	986, 1220
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	1215
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	7 cut(s)	163, 206, 264, 535, 728, 1071, 1193
BseGI	GGATG	5 cut(s)	431, 718, 891, 927, 1014
BseJI	GATNNNNATC	1 cut(s)	1215
BseLI	CCNNNNNNNGG	2 cut(s)	169, 207
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	986, 1220
BseRI	GAGGAG	3 cut(s)	251, 722, 1027
BseXI	GCAGC	2 cut(s)	239, 988
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	110, 162
BshNI	GGYRCC	1 cut(s)	531
BsiHKAI	GWGCWC	1 cut(s)	753
BsiHKCI	CYCGRG	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	169, 207
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	110, 162
Bso31I	GGTCTC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	664, 753
Bsp143I	GATC	4 cut(s)	14, 102, 451, 916
Bsp1720I	GCTNAGC	1 cut(s)	459
BspACI	CCGC	4 cut(s)	154, 224, 593, 1128
BspANI	GGCC	2 cut(s)	110, 162
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	4 cut(s)	109, 262, 533, 1100
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	531
BspTI	CTTAAG	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	986, 1220
BssECI	CCNNGG	7 cut(s)	163, 206, 264, 535, 728, 1071, 1193
BssMI	GATC	4 cut(s)	14, 102, 451, 916
BssNI	GRCGYC	1 cut(s)	1001
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	4 cut(s)	163, 264, 535, 1193
Bst2BI	CACGAG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	2 cut(s)	1103, 1231
Bst6I	CTCTTC	1 cut(s)	842
BstACI	GRCGYC	1 cut(s)	1001
BstAFI	CTTAAG	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	469
BstC8I	GCNNGC	1 cut(s)	721
BstDEI	CTNAG	4 cut(s)	300, 459, 510, 633
BstENI	CCTNNNNNAGG	1 cut(s)	167
BstF5I	GGATG	5 cut(s)	431, 718, 891, 927, 1014
BstFNI	CGCG	1 cut(s)	232
BstHHI	GCGC	2 cut(s)	232, 1120
BstKTI	GATC	4 cut(s)	17, 105, 454, 919
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	4 cut(s)	14, 102, 451, 916
BstMWI	GCNNNNNNNGC	3 cut(s)	469, 770, 1117
BstNI	CCWGG	1 cut(s)	729
BstSCI	CCNGG	1 cut(s)	727
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	239, 988
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	2 cut(s)	14, 451
BstXI	CCANNNNNNTGG	2 cut(s)	938, 1025
BstYI	RGATCY	2 cut(s)	14, 451
Bsu36I	CCTNAGG	1 cut(s)	300
BsuI	GTATCC	2 cut(s)	1080, 1227
BsuRI	GGCC	2 cut(s)	110, 162
BtsCI	GGATG	5 cut(s)	431, 718, 891, 927, 1014
BtsIMutI	CAGTG	2 cut(s)	507, 1227
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	721
CfoI	GCGC	2 cut(s)	232, 1120
Cfr13I	GGNCC	2 cut(s)	108, 803
CseI	GACGC	1 cut(s)	990
Csp6I	GTAC	4 cut(s)	379, 532, 560, 637
CviAII	CATG	5 cut(s)	142, 553, 754, 932, 992
CviQI	GTAC	4 cut(s)	379, 532, 560, 637
DdeI	CTNAG	4 cut(s)	300, 459, 510, 633
DpnI	GATC	4 cut(s)	16, 104, 453, 918
DpnII	GATC	4 cut(s)	14, 102, 451, 916
Eam1104I	CTCTTC	1 cut(s)	842
EarI	CTCTTC	1 cut(s)	842
Ecl136II	GAGCTC	1 cut(s)	751
Eco130I	CCWWGG	4 cut(s)	163, 264, 535, 1193
Eco24I	GRGCYC	2 cut(s)	664, 753
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	803
Eco53kI	GAGCTC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	751
EcoNI	CCTNNNNNAGG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	108
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	727
EcoT14I	CCWWGG	4 cut(s)	163, 264, 535, 1193
EcoT38I	GRGCYC	2 cut(s)	664, 753
ErhI	CCWWGG	4 cut(s)	163, 264, 535, 1193
FaeI	CATG	5 cut(s)	145, 556, 757, 935, 995
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	5 cut(s)	141, 552, 753, 931, 991
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	225, 228, 977
FokI	GGATG	5 cut(s)	438, 725, 878, 914, 1021
FriOI	GRGCYC	2 cut(s)	664, 753
Fsp4HI	GCNGC	3 cut(s)	225, 228, 977
FspBI	CTAG	2 cut(s)	330, 1237
GlaI	GCGC	2 cut(s)	231, 1119
GluI	GCNGC	3 cut(s)	225, 228, 977
GsuI	CTGGAG	4 cut(s)	79, 456, 1024, 1148
HaeIII	GGCC	2 cut(s)	110, 162
HgaI	GACGC	1 cut(s)	990
HhaI	GCGC	2 cut(s)	232, 1120
Hin1I	GRCGYC	1 cut(s)	1001
Hin1II	CATG	5 cut(s)	145, 556, 757, 935, 995
Hin6I	GCGC	2 cut(s)	230, 1118
HinP1I	GCGC	2 cut(s)	230, 1118
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	5 cut(s)	4, 119, 145, 313, 1131
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	22, 31
Hpy188I	TCNGA	3 cut(s)	210, 619, 1124
Hpy188III	TCNNGA	7 cut(s)	96, 604, 655, 704, 778, 895, 1165
Hpy8I	GTNNAC	2 cut(s)	22, 31
HpyAV	CCTTC	4 cut(s)	360, 739, 936, 1188
HpyCH4III	ACNGT	2 cut(s)	1103, 1231
HpyCH4V	TGCA	9 cut(s)	281, 472, 494, 649, 857, 927, 976, 1206, 1225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	469, 770, 1117
HpyF3I	CTNAG	4 cut(s)	300, 459, 510, 633
Hsp92I	GRCGYC	1 cut(s)	1001
Hsp92II	CATG	5 cut(s)	145, 556, 757, 935, 995
HspAI	GCGC	2 cut(s)	230, 1118
KpnI	GGTACC	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	14, 102, 451, 916
LmnI	GCTCC	2 cut(s)	260, 748
Lsp1109I	GCAGC	2 cut(s)	239, 988
LweI	GCATC	2 cut(s)	706, 936
MaeI	CTAG	2 cut(s)	330, 1237
MaeIII	GTNAC	3 cut(s)	517, 1002, 1028
MalI	GATC	4 cut(s)	16, 104, 453, 918
MboI	GATC	4 cut(s)	14, 102, 451, 916
MboII	GAAGA	4 cut(s)	351, 829, 979, 1211
MfeI	CAATTG	1 cut(s)	58
MflI	RGATCY	2 cut(s)	14, 451
MhlI	GDGCHC	2 cut(s)	664, 753
MluCI	AATT	8 cut(s)	58, 325, 383, 409, 526, 565, 898, 970
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	368
MseI	TTAA	6 cut(s)	87, 150, 339, 372, 399, 954
MslI	CAYNNNNRTG	2 cut(s)	691, 936
MspCI	CTTAAG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	729
MunI	CAATTG	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	729
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	469, 770, 1117
NdeII	GATC	4 cut(s)	14, 102, 451, 916
NlaIII	CATG	5 cut(s)	145, 556, 757, 935, 995
NlaIV	GGNNCC	4 cut(s)	109, 262, 533, 1100
NmuCI	GTSAC	1 cut(s)	1002
PaeR7I	CTCGAG	1 cut(s)	128
PaqCI	CACCTGC	1 cut(s)	238
PfeI	GAWTC	3 cut(s)	145, 313, 1131
PkrI	GCNGC	3 cut(s)	226, 229, 978
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PshBI	ATTAAT	2 cut(s)	87, 954
PsiI	TTATAA	1 cut(s)	408
Psp124BI	GAGCTC	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	4 cut(s)	109, 262, 533, 1100
PspPI	GGNCC	2 cut(s)	108, 803
PspXI	VCTCGAGB	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	14, 451
RsaI	GTAC	4 cut(s)	380, 533, 561, 638
RsaNI	GTAC	4 cut(s)	379, 532, 560, 637
RseI	CAYNNNNRTG	2 cut(s)	691, 936
SacI	GAGCTC	1 cut(s)	753
SaqAI	TTAA	6 cut(s)	87, 150, 339, 372, 399, 954
SatI	GCNGC	3 cut(s)	225, 228, 977
Sau3AI	GATC	4 cut(s)	14, 102, 451, 916
Sau96I	GGNCC	2 cut(s)	108, 803
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	729
SduI	GDGCHC	2 cut(s)	664, 753
SfaNI	GCATC	2 cut(s)	706, 936
SfcI	CTRYAG	1 cut(s)	447
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	803
SlaI	CTCGAG	1 cut(s)	128
SmiMI	CAYNNNNRTG	2 cut(s)	691, 936
SmlI	CTYRAG	4 cut(s)	128, 149, 776, 962
SmoI	CTYRAG	4 cut(s)	128, 149, 776, 962
Sse9I	AATT	8 cut(s)	58, 325, 383, 409, 526, 565, 898, 970
SsiI	CCGC	4 cut(s)	154, 224, 593, 1128
SspMI	CTAG	2 cut(s)	330, 1237
SstI	GAGCTC	1 cut(s)	753
StyD4I	CCNGG	1 cut(s)	727
StyI	CCWWGG	4 cut(s)	163, 264, 535, 1193
TaaI	ACNGT	2 cut(s)	1103, 1231
TaqI	TCGA	6 cut(s)	7, 129, 605, 743, 915, 1046
TaqII	GACCGA	1 cut(s)	791
TasI	AATT	8 cut(s)	58, 325, 383, 409, 526, 565, 898, 970
TatI	WGTACW	2 cut(s)	378, 636
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	3 cut(s)	145, 313, 1131
Tru1I	TTAA	6 cut(s)	87, 150, 339, 372, 399, 954
Tru9I	TTAA	6 cut(s)	87, 150, 339, 372, 399, 954
TscAI	CASTG	2 cut(s)	514, 1227
TseFI	GTSAC	1 cut(s)	1002
TseI	GCWGC	2 cut(s)	227, 976
Tsp45I	GTSAC	1 cut(s)	1002
TspDTI	ATGAA	3 cut(s)	338, 342, 980
TspGWI	ACGGA	2 cut(s)	7, 1021
TspRI	CASTG	2 cut(s)	514, 1227
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	803
VspI	ATTAAT	2 cut(s)	87, 954
XagI	CCTNNNNNAGG	1 cut(s)	167
XapI	RAATTY	3 cut(s)	325, 898, 970
XhoI	CTCGAG	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	2 cut(s)	330, 1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.