Rh6DG131300

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002307
Physical Location & Seq
Reverse (-)
18659579 .. 18661880
2302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG131300.1

Sequence Viewer

Length: 468 bp
ATGCTTTCCATTCCTCGGAGGCTATCAATGGCGGCAGCGCGTGAGGAGGCGGAGCAGGTGATTTTTGGAGCCTTGGATAATCTATTTGCAAATACTAATGTCAATCCTAAGGACATTGGGATTCTTGTTATGAATTCTAGTCTGTTTAATCCAACTCCTTCATTGTCTTCTATGATTGTTAATAAGTACAAATTGAGGGGAAGTATTAAGAGTTATAATTTGGGAGGTATGGGATGTAGTGCTGGAGTTATAGCTGTAGATCTTGCTAAGCACCTGTTGCAAGTTCAAAAGAACACTTATGCAGTTGTTGTCAGCACTGAGAATGTTACTCAAAATTGGTACCTTGGGAACAAGAAATCCATGTTGGAACAAAATTGTTTGTTTCGTGTGGGTGGGTCTGCGGTTTTGCTCTCGAACAAGTTATCTGATAGGTGTAGGGCTAAGTACAAGCTTGTGCGATGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

155

Amino Acids

17.03

Weight (kDa)

9.79

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 2 - 153 3.4e-75 FAE1/Type III polyketide synthase-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AarI CACCTGC 1 cut(s) 46
Acc36I ACCTGC 1 cut(s) 46
Acc65I GGTACC 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 339
AccII CGCG 1 cut(s) 40
AciI CCGC 3 cut(s) 32, 50, 401
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 3 cut(s) 188, 341, 446
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 1 cut(s) 287
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AloI GAACNNNNNNTCC 2 cut(s) 341, 373
AluBI AGCT 2 cut(s) 254, 451
AluI AGCT 2 cut(s) 254, 451
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 133
Asp718I GGTACC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 70
AxyI CCTNAGG 1 cut(s) 108
BanI GGYRCC 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 47
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 46
BglII AGATCT 1 cut(s) 259
BisI GCNGC 2 cut(s) 33, 36
BlpI GCTNAGC 1 cut(s) 267
BlsI GCNGC 2 cut(s) 34, 37
BmiI GGNNCC 2 cut(s) 70, 341
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 264
Bpu1102I GCTNAGC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 14, 72, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse21I CCTNAGG 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 14, 72, 343
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 40
BshNI GGYRCC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 15
Bsp143I GATC 1 cut(s) 259
Bsp1720I GCTNAGC 1 cut(s) 267
BspACI CCGC 3 cut(s) 32, 50, 401
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 70, 341
BspMI ACCTGC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 339
BssECI CCNNGG 3 cut(s) 14, 72, 343
BssMI GATC 1 cut(s) 259
BssT1I CCWWGG 2 cut(s) 72, 343
BstAPI GCANNNNNTGC 1 cut(s) 277
BstDEI CTNAG 4 cut(s) 108, 267, 318, 441
BstF5I GGATG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 40
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 255
BstUI CGCG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
Bsu36I CCTNAGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 315
BveI ACCTGC 1 cut(s) 46
CfoI GCGC 1 cut(s) 40
Csp6I GTAC 3 cut(s) 187, 340, 445
CviAII CATG 1 cut(s) 361
CviJI RGCY 5 cut(s) 22, 71, 254, 440, 451
CviKI_1 RGCY 5 cut(s) 22, 71, 254, 440, 451
CviQI GTAC 3 cut(s) 187, 340, 445
DdeI CTNAG 4 cut(s) 108, 267, 318, 441
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
EciI GGCGGA 1 cut(s) 65
Eco130I CCWWGG 2 cut(s) 72, 343
Eco81I CCTNAGG 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 133
EcoT14I CCWWGG 2 cut(s) 72, 343
ErhI CCWWGG 2 cut(s) 72, 343
FaeI CATG 1 cut(s) 364
FaiI YATR 7 cut(s) 131, 173, 216, 230, 251, 300, 362
FatI CATG 1 cut(s) 360
Fnu4HI GCNGC 2 cut(s) 33, 36
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 33, 36
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 39
GluI GCNGC 2 cut(s) 33, 36
GsuI CTGGAG 1 cut(s) 264
HhaI GCGC 1 cut(s) 40
Hin1II CATG 1 cut(s) 364
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 1 cut(s) 121
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 18, 427
Hpy188III TCNNGA 1 cut(s) 412
HpyAV CCTTC 1 cut(s) 168
HpyCH4V TGCA 3 cut(s) 89, 280, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 4 cut(s) 108, 267, 318, 441
Hsp92II CATG 1 cut(s) 364
HspAI GCGC 1 cut(s) 38
KpnI GGTACC 1 cut(s) 343
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 2 cut(s) 52, 68
LpnPI CCDG 3 cut(s) 41, 228, 287
Lsp1109I GCAGC 1 cut(s) 47
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 325
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 1 cut(s) 159
MflI RGATCY 1 cut(s) 259
MluCI AATT 5 cut(s) 133, 191, 217, 334, 373
MmeI TCCRAC 2 cut(s) 176, 345
MnlI CCTC 6 cut(s) 12, 24, 37, 40, 189, 218
MseI TTAA 3 cut(s) 147, 180, 207
MvnI CGCG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 277
NdeII GATC 1 cut(s) 259
NlaIII CATG 1 cut(s) 364
NlaIV GGNNCC 2 cut(s) 70, 341
PaqCI CACCTGC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 2 cut(s) 34, 37
PsiI TTATAA 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 70, 341
PsuI RGATCY 1 cut(s) 259
RsaI GTAC 3 cut(s) 188, 341, 446
RsaNI GTAC 3 cut(s) 187, 340, 445
SaqAI TTAA 3 cut(s) 147, 180, 207
SatI GCNGC 2 cut(s) 33, 36
Sau3AI GATC 1 cut(s) 259
SetI ASST 7 cut(s) 60, 229, 256, 276, 345, 434, 453
SfcI CTRYAG 1 cut(s) 255
Sse9I AATT 5 cut(s) 133, 191, 217, 334, 373
SsiI CCGC 3 cut(s) 32, 50, 401
SspMI CTAG 1 cut(s) 138
StyI CCWWGG 2 cut(s) 72, 343
TaqI TCGA 1 cut(s) 413
TasI AATT 5 cut(s) 133, 191, 217, 334, 373
TatI WGTACW 2 cut(s) 186, 444
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 3 cut(s) 147, 180, 207
Tru9I TTAA 3 cut(s) 147, 180, 207
TscAI CASTG 1 cut(s) 322
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 146, 150
TspRI CASTG 1 cut(s) 322
XapI RAATTY 1 cut(s) 133
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.