Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002307

Physical Location & Seq

Genomic Coordinates Reverse (-)

2049433 .. 2052157

Gene Structure 2725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0015600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2316 bp

ATGGCCACCTTTCTCTCCATTTCCCTCATCTTCATCTTCTTCTTCATATCTCAGATCGAATCAGAGCCCCTCGATCAGACGGTGAAGACCTTCATCTTCAGAATCGACAGATTCTCCAAGCCGTCGATTTTCCAGTCGCATTACCACTGGTACACCTCGGAGTTCGCCGACCCACCTCAAATTCTCAACGTATACGACACCGTTTTCCATGGCTTCTCTGCAACTCTCACCTCCGACCAAGTTGCCTCCCTCAGCCAACACCCTGCCGTCCTCCACGTGTTTGAAGACCGCCGCCGCCAGCTCCACACCACCCGCTCGCCGCAGTTCCTCGGCCTGAGAAACCAGAAGGGGCTCTGGTCGGAATCCGATTACGGCTCCGACGTCATCGTCGGGGTTTTCGATACTGGAGTTTGGCCGGAGCGTCGGAGCTTCTCGGATAGGAATCTCGGTCCGGTTCCGAAGCGGTGGAGAGGGGTCTGTGAGACTGGAGTTAAATTTACGGCTAGGAATTGCAATAAGAAGCTGATCGGAGCTCGGTTCTTCATCAAAGGTCATGAAGCCGCCGCCAATGCCGGCGGTCCGATAACAGCAATCAACGGCTCAGTAGAATTCCGGTCTCCCAGAGACGCCGACGGCCATGGGACACACACGGCGTCCACCGCCGCCGGGCGGTACGCCTTCGAGGCCAGCATGTCCGGCTACGCTTCCGGCATCGCAAAGGGAGTTGCTCCGAAATCTCGCTTGGCTGTCTACAAGGTGTGCTGGAAGGACTCCGGTTGCTTCGACTCCGATATCTTGGCCGCCTTCGAGGCCGCCGTCAACGACGGCGTTGACGTCATTTCAATCTCAATTGGAGGCGGCGATGGAGTTTCTTCTCCCTATTATCTCGATCCGATTGCGATCGGATCATTCGGCGCCGCTGCGCATGGAGTGTTTGTTTCGGCCTCCGCCGGGAACGACGGACCTAACGGAATGTCGGTGACGAACCTGGCGCCGTGGCTGACGACTGTCGGAGCAGGAACAATCGATCGGAACTTCCCGGCGGTGGTGGTCCTAGGCGACGGCCGGAGACTCTCCGGAGTTTCTTTATACGCCGGAGCTCCGCTGAAGGGGAAGATGTACCCGCTCGTCTATCCCGGAAAGTCAGGTATGCTCTCTACTTCACTGTGCATGGAGAACTCCCTGGACCCGCGTCAGGTGAGGGGCAAAATCGTCATTTGCGACAGGGGAAACAATCCCAGAGTGGCGAAAGGTATGGTAGTGAAGAAAGCAGGAGGTGTGGGAATGATCCTGGCTAACGGAATCTCCAACGGCGAAGGACTCGTCGGCGATGCTCACCTTCTCCCCACCGCAGCTGTCGGCGCCGACGAAGGTGACGCCGTCAAAGCTTACGTGTCGTCCACCAAGACTCCTTCAGCTACTATCGACTTCCAGGGGACTGTGATCGGAATCAAGCCGGCTCCGGTGGTTGCTTCGTTTTCGGGTAGAGGGCCGAACGGGTTGAACCCGGAGATTCTGAAGCCGGATCTGATCGCTCCGGGAGTCAACATCCTCGCTGCGTGGACCGACGCGGTGGGCCCAACCGGGTTGGAAGCGGATAACCGGAAAACAGAGTTTAATATCCTCTCGGGAACATCAATGGCTGCCCCTCACGTGAGCGGGGCCGCCGCTCTGCTGAAGTCGGCTCACCCCGATTGGAGTCCGGCGGCGATAAGATCGGCGATGATGACGACTGCTGGTATCACCAATAATCAGAACAAAACCATGACTGATGAAGCTACTGGAAACCCCTCCACTCCTTATGATTTAGGGGCGGGTCATTTGAATTTGGACCGGGCCATGGACCCGGGTCTGGTATATGATATCACCGGTGAGGATTACGTCCGGTTTCTCTGCTCGGTCGGGTACGGGCCGAGAGTAATCCAGGTGATCACTCGGTCGCCGCCGAAATGTCCGGGGAAAAAGACTTCGCCGGGAAATCTGAACTACCCGTCAATCGCGGCGTTGTTTCCGACATCCGCGGCCGGGCTGTCCAGCAAGACGTTTATTCGGACGGTGACGAATGTGGGCCAGCCCAATGCGGTATACAGGCCCATGATAGAGGCGCCGAAAGGAGTGAAGGTGACGGTGAAGCCGTCGAAGCTGGTGTTCACGGAGGCGGTGAAGACGCGGAGCTACTTGGTGACGGTGGCGGTGGATAGGAGCAACATGTTGTTGGGTGAGTCGGGTGGGGTGTTCGGGTCGCTGTATTGGAGCGATGGGAAGCAGCATGCGGTTCGGAGCCCCATTGTGGTGACCCAAATGGATCCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009611 GO:0009628 GO:0009698 GO:0009699 GO:0009922 GO:0009987 GO:0010345 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

771

Amino Acids

81.69

Weight (kDa)

8.99

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	39 - 102	5.2e-13	Peptidase inhibitor I9
Peptidase_S8	PF00082	125 - 595	8.2e-47	Subtilase family
PA	PF02225	374 - 460	2.1e-13	PA domain
fn3_6	PF17766	660 - 765	3.1e-27	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16280 AT4G34510
fragaria_vesca	FvH4_2g08940 FvH4_2g08940
malus_domestica	MD05G1065300.v1.1 MD10G1075000.v1.1
prunus_persica	Prupe.8G096100_v2.0.a1
pyrus_communis	pycom05g05670 pycom10g05860
rosa_chinensis	RchiOBHm_Chr2g0164781 RchiOBHm_Chr6g0264551 RchiOBHm_Chr6g0266411 RchiOBHm_Chr6g0266471 RchiOBHm_Chr6g0266501
rosa_laevigata	RLG00000014100 RLG00000014245
rosa_multiflora	Rmu_co8165060.1_g000001 Rmu_sc0000578.1_g000014 Rmu_sc0000946.1_g000023 Rmu_sc0002235.1_g000037 Rmu_sc0003605.1_g000018 Rmu_sc0003859.1_g000044 Rmu_sc0008317.1_g000012
rosa_roxburghii	Rroxscaffold_175G00431910 Rroxscaffold_7G00201710
rosa_rugosa	Rorug06G0015600
rosa_samantha	Rh2BG589600 Rh2CG560200 Rh6AG133300 Rh6AG145800 Rh6AG146600 Rh6BG130800 Rh6BG146200 Rh6BG146600 Rh6CG129000 Rh6CG142700 Rh6DG116200 Rh6DG130800 Rh6DG131300
rosa_wichuraiana	Rw0G009730 Rw2G048020 Rw6G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AatII	GACGTC	2 cut(s)	384, 837
Acc16I	TGCGCA	1 cut(s)	924
AccB1I	GGYRCC	4 cut(s)	914, 991, 1361, 2104
AccBSI	CCGCTC	4 cut(s)	315, 1126, 1659, 1670
AccI	GTMKAC	3 cut(s)	192, 750, 2085
AccII	CGCG	5 cut(s)	1192, 1571, 2000, 2021, 2170
AccIII	TCCGGA	1 cut(s)	1076
AclWI	GGATC	6 cut(s)	884, 913, 1282, 1533, 2300, 2313
AcoI	YGGCCR	6 cut(s)	3, 413, 634, 798, 1063, 2022
AcsI	RAATTY	4 cut(s)	180, 494, 608, 1825
AcuI	CTGAAG	5 cut(s)	82, 1127, 1398, 1538, 1697
AcvI	CACGTG	2 cut(s)	277, 1654
AcyI	GRCGYC	9 cut(s)	381, 627, 653, 834, 915, 992, 1362, 1377, 2105
AfaI	GTAC	4 cut(s)	152, 674, 1121, 1907
AflIII	ACRYGT	3 cut(s)	276, 1392, 2208
AgeI	ACCGGT	1 cut(s)	1868
AgsI	TTSAA	4 cut(s)	284, 843, 1504, 1825
AjnI	CCWGG	5 cut(s)	987, 1182, 1290, 1431, 1923
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
Alw21I	GWGCWC	2 cut(s)	535, 1102
Alw26I	GTCTC	4 cut(s)	476, 618, 621, 1063
AlwI	GGATC	6 cut(s)	884, 913, 1282, 1533, 2300, 2313
Ama87I	CYCGRG	2 cut(s)	1627, 1846
Aor13HI	TCCGGA	1 cut(s)	1076
ApaI	GGGCCC	1 cut(s)	1580
ApeKI	GCWGC	5 cut(s)	920, 1352, 1556, 1643, 2266
ApoI	RAATTY	4 cut(s)	180, 494, 608, 1825
ArsI	GACNNNNNNTTYG	2 cut(s)	1308, 1340
AsiGI	ACCGGT	1 cut(s)	1868
Asp700I	GAANNNNTTC	1 cut(s)	89
AspA2I	CCTAGG	1 cut(s)	1054
AspLEI	GCGC	5 cut(s)	917, 925, 994, 1364, 2107
AvaI	CYCGRG	2 cut(s)	1627, 1846
AvaII	GGWCC	8 cut(s)	449, 578, 962, 1051, 1186, 1563, 1831, 1843
AvrII	CCTAGG	1 cut(s)	1054
BaeGI	GKGCMC	1 cut(s)	1580
BaeI	ACNNNNGTAYC	2 cut(s)	393, 426
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	2305
BanI	GGYRCC	4 cut(s)	914, 991, 1361, 2104
BanII	GRGCYC	6 cut(s)	69, 354, 535, 1102, 1580, 2285
BbrPI	CACGTG	2 cut(s)	277, 1654
BbsI	GAAGAC	3 cut(s)	92, 291, 2171
Bbv12I	GWGCWC	2 cut(s)	535, 1102
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	5 cut(s)	907, 1364, 1543, 1630, 2278
BccI	CCATC	2 cut(s)	857, 2252
BcgI	CGANNNNNNTGC	6 cut(s)	224, 258, 878, 912, 2258, 2292
BciT130I	CCWGG	5 cut(s)	989, 1184, 1292, 1433, 1925
BclI	TGATCA	1 cut(s)	1929
BcoDI	GTCTC	4 cut(s)	476, 618, 621, 1063
BfaI	CTAG	2 cut(s)	504, 1055
BfoI	RGCGCY	4 cut(s)	918, 995, 1365, 2108
BglI	GCCNNNNNGGC	2 cut(s)	683, 809
BlnI	CCTAGG	1 cut(s)	1054
Bme18I	GGWCC	8 cut(s)	449, 578, 962, 1051, 1186, 1563, 1831, 1843
BmeT110I	CYCGRG	2 cut(s)	1627, 1846
BmsI	GCATC	2 cut(s)	720, 1321
BoxI	GACNNNNGTC	3 cut(s)	1007, 1191, 1848
BpiI	GAAGAC	3 cut(s)	92, 291, 2171
BpmI	CTGGAG	2 cut(s)	426, 507
Bpu10I	CCTNAGC	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	1026
BsaAI	YACGTR	3 cut(s)	277, 1393, 1654
BsaBI	GATNNNNATC	3 cut(s)	441, 899, 1448
BsaHI	GRCGYC	9 cut(s)	381, 627, 653, 834, 915, 992, 1362, 1377, 2105
BsaI	GGTCTC	1 cut(s)	621
BsaWI	WCCGGW	8 cut(s)	451, 612, 773, 1076, 1462, 1602, 1868, 1884
Bse118I	RCCGGY	3 cut(s)	572, 1456, 1868
Bse1I	ACTGG	5 cut(s)	133, 152, 409, 490, 1786
Bse8I	GATNNNNATC	3 cut(s)	441, 899, 1448
BseAI	TCCGGA	1 cut(s)	1076
BseBI	CCWGG	5 cut(s)	989, 1184, 1292, 1433, 1925
BseCI	ATCGAT	1 cut(s)	1026
BseGI	GGATG	2 cut(s)	1548, 2015
BseJI	GATNNNNATC	3 cut(s)	441, 899, 1448
BseMII	CTCAG	4 cut(s)	65, 265, 326, 615
BseNI	ACTGG	5 cut(s)	133, 152, 409, 490, 1786
BseSI	GKGCMC	1 cut(s)	1580
BseX3I	CGGCCG	2 cut(s)	1063, 2022
BseXI	GCAGC	5 cut(s)	907, 1364, 1543, 1630, 2278
Bsh1236I	CGCG	5 cut(s)	1192, 1571, 2000, 2021, 2170
Bsh1285I	CGRYCG	6 cut(s)	903, 1030, 1066, 1902, 1940, 2025
BshNI	GGYRCC	4 cut(s)	914, 991, 1361, 2104
BshTI	ACCGGT	1 cut(s)	1868
BshVI	ATCGAT	1 cut(s)	1026
BsiEI	CGRYCG	6 cut(s)	903, 1030, 1066, 1902, 1940, 2025
BsiHKAI	GWGCWC	2 cut(s)	535, 1102
BsiHKCI	CYCGRG	2 cut(s)	1627, 1846
BslFI	GGGAC	2 cut(s)	655, 1450
BsmAI	GTCTC	4 cut(s)	476, 618, 621, 1063
BsmBI	CGTCTC	1 cut(s)	618
BsmFI	GGGAC	2 cut(s)	655, 1450
Bso31I	GGTCTC	1 cut(s)	621
BsoBI	CYCGRG	2 cut(s)	1627, 1846
Bsp120I	GGGCCC	1 cut(s)	1576
Bsp1286I	GDGCHC	6 cut(s)	69, 354, 535, 1102, 1580, 2285
Bsp13I	TCCGGA	1 cut(s)	1076
Bsp19I	CCATGG	3 cut(s)	208, 637, 1839
BspCNI	CTCAG	4 cut(s)	64, 264, 327, 614
BspDI	ATCGAT	1 cut(s)	1026
BspEI	TCCGGA	1 cut(s)	1076
BspFNI	CGCG	5 cut(s)	1192, 1571, 2000, 2021, 2170
BspHI	TCATGA	1 cut(s)	553
BspPI	GGATC	6 cut(s)	884, 913, 1282, 1533, 2300, 2313
BspT107I	GGYRCC	4 cut(s)	914, 991, 1361, 2104
BspTNI	GGTCTC	1 cut(s)	621
BsrBI	CCGCTC	4 cut(s)	315, 1126, 1659, 1670
BsrFI	RCCGGY	3 cut(s)	572, 1456, 1868
BsrI	ACTGG	5 cut(s)	133, 152, 409, 490, 1786
BssAI	RCCGGY	3 cut(s)	572, 1456, 1868
BssNAI	GTATAC	2 cut(s)	193, 2086
BssNI	GRCGYC	9 cut(s)	381, 627, 653, 834, 915, 992, 1362, 1377, 2105
BssT1I	CCWWGG	4 cut(s)	208, 637, 1054, 1839
Bst1107I	GTATAC	2 cut(s)	193, 2086
Bst2UI	CCWGG	5 cut(s)	989, 1184, 1292, 1433, 1925
Bst4CI	ACNGT	8 cut(s)	82, 202, 1009, 1167, 1441, 2056, 2128, 2188
BstACI	GRCGYC	9 cut(s)	381, 627, 653, 834, 915, 992, 1362, 1377, 2105
BstBAI	YACGTR	3 cut(s)	277, 1393, 1654
BstC8I	GCNNGC	7 cut(s)	299, 317, 574, 688, 1458, 2072, 2271
BstDEI	CTNAG	4 cut(s)	51, 251, 335, 601
BstDSI	CCRYGG	5 cut(s)	208, 637, 995, 1839, 2019
BstEII	GGTNACC	1 cut(s)	2293
BstF5I	GGATG	2 cut(s)	1548, 2015
BstFNI	CGCG	5 cut(s)	1192, 1571, 2000, 2021, 2170
BstH2I	RGCGCY	4 cut(s)	918, 995, 1365, 2108
BstHHI	GCGC	5 cut(s)	917, 925, 994, 1364, 2107
BstMAI	GTCTC	4 cut(s)	476, 618, 621, 1063
BstMCI	CGRYCG	6 cut(s)	903, 1030, 1066, 1902, 1940, 2025
BstMWI	GCNNNNNNNGC	8 cut(s)	569, 659, 683, 696, 809, 1361, 1385, 2140
BstNI	CCWGG	5 cut(s)	989, 1184, 1292, 1433, 1925
BstNSI	RCATGY	3 cut(s)	694, 2212, 2273
BstPAI	GACNNNNGTC	3 cut(s)	1007, 1191, 1848
BstPI	GGTNACC	1 cut(s)	2293
BstSLI	GKGCMC	1 cut(s)	1580
BstUI	CGCG	5 cut(s)	1192, 1571, 2000, 2021, 2170
BstV1I	GCAGC	5 cut(s)	907, 1364, 1543, 1630, 2278
BstV2I	GAAGAC	3 cut(s)	92, 291, 2171
BstX2I	RGATCY	2 cut(s)	1525, 2305
BstYI	RGATCY	2 cut(s)	1525, 2305
BstZ17I	GTATAC	2 cut(s)	193, 2086
BstZI	CGGCCG	2 cut(s)	1063, 2022
Bsu15I	ATCGAT	1 cut(s)	1026
BsuTUI	ATCGAT	1 cut(s)	1026
BtgI	CCRYGG	5 cut(s)	208, 637, 995, 1839, 2019
BtgZI	GCGATG	5 cut(s)	697, 876, 1344, 1736, 2271
BtsCI	GGATG	2 cut(s)	1548, 2015
BtsIMutI	CAGTG	2 cut(s)	145, 1163
Cac8I	GCNNGC	7 cut(s)	299, 317, 574, 688, 1458, 2072, 2271
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	5 cut(s)	917, 925, 994, 1364, 2107
Cfr10I	RCCGGY	3 cut(s)	572, 1456, 1868
Cfr42I	CCGCGG	1 cut(s)	2022
Cfr9I	CCCGGG	1 cut(s)	1846
ClaI	ATCGAT	1 cut(s)	1026
CpoI	CGGWCCG	2 cut(s)	449, 578
CseI	GACGC	7 cut(s)	410, 635, 642, 1181, 1385, 1577, 2176
Csp6I	GTAC	4 cut(s)	151, 673, 1120, 1906
CspAI	ACCGGT	1 cut(s)	1868
CspI	CGGWCCG	2 cut(s)	449, 578
CviQI	GTAC	4 cut(s)	151, 673, 1120, 1906
DdeI	CTNAG	4 cut(s)	51, 251, 335, 601
DinI	GGCGCC	4 cut(s)	916, 993, 1363, 2106
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	6 cut(s)	3, 413, 634, 798, 1063, 2022
EagI	CGGCCG	2 cut(s)	1063, 2022
EciI	GGCGGA	1 cut(s)	937
Ecl136II	GAGCTC	2 cut(s)	533, 1100
EclXI	CGGCCG	2 cut(s)	1063, 2022
Eco130I	CCWWGG	4 cut(s)	208, 637, 1054, 1839
Eco24I	GRGCYC	6 cut(s)	69, 354, 535, 1102, 1580, 2285
Eco31I	GGTCTC	1 cut(s)	621
Eco32I	GATATC	2 cut(s)	793, 1864
Eco47I	GGWCC	8 cut(s)	449, 578, 962, 1051, 1186, 1563, 1831, 1843
Eco52I	CGGCCG	2 cut(s)	1063, 2022
Eco53kI	GAGCTC	2 cut(s)	533, 1100
Eco57I	CTGAAG	5 cut(s)	82, 1127, 1398, 1538, 1697
Eco72I	CACGTG	2 cut(s)	277, 1654
Eco88I	CYCGRG	2 cut(s)	1627, 1846
Eco91I	GGTNACC	1 cut(s)	2293
EcoICRI	GAGCTC	2 cut(s)	533, 1100
EcoO65I	GGTNACC	1 cut(s)	2293
EcoRI	GAATTC	1 cut(s)	608
EcoRII	CCWGG	5 cut(s)	987, 1182, 1290, 1431, 1923
EcoRV	GATATC	2 cut(s)	793, 1864
EcoT14I	CCWWGG	4 cut(s)	208, 637, 1054, 1839
EcoT38I	GRGCYC	6 cut(s)	69, 354, 535, 1102, 1580, 2285
EgeI	GGCGCC	4 cut(s)	916, 993, 1363, 2106
EheI	GGCGCC	4 cut(s)	916, 993, 1363, 2106
ErhI	CCWWGG	4 cut(s)	208, 637, 1054, 1839
Esp3I	CGTCTC	1 cut(s)	618
FaqI	GGGAC	2 cut(s)	655, 1450
FauI	CCCGC	5 cut(s)	320, 1131, 1197, 1652, 1807
FbaI	TGATCA	1 cut(s)	1929
FblI	GTMKAC	3 cut(s)	192, 750, 2085
FokI	GGATG	2 cut(s)	1535, 2002
FriOI	GRGCYC	6 cut(s)	69, 354, 535, 1102, 1580, 2285
FspBI	CTAG	2 cut(s)	504, 1055
FspI	TGCGCA	1 cut(s)	924
GlaI	GCGC	5 cut(s)	916, 924, 993, 1363, 2106
GsuI	CTGGAG	2 cut(s)	426, 507
HaeII	RGCGCY	4 cut(s)	918, 995, 1365, 2108
HgaI	GACGC	7 cut(s)	410, 635, 642, 1181, 1385, 1577, 2176
HhaI	GCGC	5 cut(s)	917, 925, 994, 1364, 2107
Hin1I	GRCGYC	9 cut(s)	381, 627, 653, 834, 915, 992, 1362, 1377, 2105
Hin6I	GCGC	5 cut(s)	915, 923, 992, 1362, 2105
HinP1I	GCGC	5 cut(s)	915, 923, 992, 1362, 2105
HincII	GTYRAC	3 cut(s)	820, 832, 1546
HindII	GTYRAC	3 cut(s)	820, 832, 1546
HindIII	AAGCTT	1 cut(s)	1386
Hpy188III	TCNNGA	4 cut(s)	554, 887, 1077, 1629
HpyCH4III	ACNGT	8 cut(s)	82, 202, 1009, 1167, 1441, 2056, 2128, 2188
HpyCH4IV	ACGT	8 cut(s)	189, 276, 381, 834, 1392, 1653, 1881, 2042
HpyCH4V	TGCA	3 cut(s)	221, 513, 1170
HpyF10VI	GCNNNNNNNGC	8 cut(s)	569, 659, 683, 696, 809, 1361, 1385, 2140
HpyF3I	CTNAG	4 cut(s)	51, 251, 335, 601
HpySE526I	ACGT	8 cut(s)	189, 276, 381, 834, 1392, 1653, 1881, 2042
Hsp92I	GRCGYC	9 cut(s)	381, 627, 653, 834, 915, 992, 1362, 1377, 2105
HspAI	GCGC	5 cut(s)	915, 923, 992, 1362, 2105
KasI	GGCGCC	4 cut(s)	914, 991, 1361, 2104
Kpn2I	TCCGGA	1 cut(s)	1076
KroI	GCCGGC	2 cut(s)	572, 1456
KroNI	GCCGGC	2 cut(s)	574, 1458
Ksp22I	TGATCA	1 cut(s)	1929
KspI	CCGCGG	1 cut(s)	2022
Lsp1109I	GCAGC	5 cut(s)	907, 1364, 1543, 1630, 2278
LweI	GCATC	2 cut(s)	720, 1321
MaeI	CTAG	2 cut(s)	504, 1055
MaeII	ACGT	8 cut(s)	189, 276, 381, 834, 1392, 1653, 1881, 2042
MaeIII	GTNAC	6 cut(s)	979, 1373, 2056, 2122, 2182, 2293
MbiI	CCGCTC	4 cut(s)	315, 1126, 1659, 1670
MfeI	CAATTG	1 cut(s)	849
MflI	RGATCY	2 cut(s)	1525, 2305
MhlI	GDGCHC	6 cut(s)	69, 354, 535, 1102, 1580, 2285
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	180, 494, 508, 608, 849, 1825
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	4 cut(s)	915, 992, 1362, 2105
MlyI	GAGTC	8 cut(s)	764, 779, 1065, 1314, 1402, 1551, 1708, 2231
MmeI	TCCRAC	8 cut(s)	258, 339, 402, 404, 991, 1332, 1569, 2036
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	1076
MroNI	GCCGGC	2 cut(s)	572, 1456
MroXI	GAANNNNTTC	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	492, 1617
MslI	CAYNNNNRTG	1 cut(s)	2291
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	4 cut(s)	920, 1105, 1355, 2021
MunI	CAATTG	1 cut(s)	849
MvaI	CCWGG	5 cut(s)	989, 1184, 1292, 1433, 1925
MvnI	CGCG	5 cut(s)	1192, 1571, 2000, 2021, 2170
MwoI	GCNNNNNNNGC	8 cut(s)	569, 659, 683, 696, 809, 1361, 1385, 2140
NaeI	GCCGGC	2 cut(s)	574, 1458
NarI	GGCGCC	4 cut(s)	915, 992, 1362, 2105
NcoI	CCATGG	3 cut(s)	208, 637, 1839
NgoMIV	GCCGGC	2 cut(s)	572, 1456
NmeAIII	GCCGAG	2 cut(s)	309, 1938
NmuCI	GTSAC	6 cut(s)	979, 1373, 2056, 2122, 2182, 2293
NsbI	TGCGCA	1 cut(s)	924
NspI	RCATGY	3 cut(s)	694, 2212, 2273
PaeI	GCATGC	1 cut(s)	2273
PagI	TCATGA	1 cut(s)	553
PciI	ACATGT	1 cut(s)	2208
PcsI	WCGNNNNNNNCGW	7 cut(s)	378, 396, 813, 831, 1218, 1365, 2132
PdiI	GCCGGC	2 cut(s)	574, 1458
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	8 cut(s)	59, 102, 111, 362, 442, 1302, 1449, 1513
PflFI	GACNNNGTC	1 cut(s)	1379
PfoI	TCCNGGA	2 cut(s)	1135, 1537
PinAI	ACCGGT	1 cut(s)	1868
Ple19I	CGATCG	2 cut(s)	903, 1030
PleI	GAGTC	8 cut(s)	764, 779, 1065, 1314, 1402, 1550, 1707, 2230
PluTI	GGCGCC	4 cut(s)	918, 995, 1365, 2108
PmaCI	CACGTG	2 cut(s)	277, 1654
PmlI	CACGTG	2 cut(s)	277, 1654
PpsI	GAGTC	8 cut(s)	764, 779, 1065, 1314, 1402, 1550, 1707, 2230
Ppu21I	YACGTR	3 cut(s)	277, 1393, 1654
PscI	ACATGT	1 cut(s)	2208
PshAI	GACNNNNGTC	3 cut(s)	1007, 1191, 1848
Psp124BI	GAGCTC	2 cut(s)	535, 1102
Psp6I	CCWGG	5 cut(s)	987, 1182, 1290, 1431, 1923
PspCI	CACGTG	2 cut(s)	277, 1654
PspEI	GGTNACC	1 cut(s)	2293
PspGI	CCWGG	5 cut(s)	987, 1182, 1290, 1431, 1923
PspOMI	GGGCCC	1 cut(s)	1576
PsuI	RGATCY	2 cut(s)	1525, 2305
PsyI	GACNNNGTC	1 cut(s)	1379
PvuI	CGATCG	2 cut(s)	903, 1030
PvuII	CAGCTG	1 cut(s)	1355
RsaI	GTAC	4 cut(s)	152, 674, 1121, 1907
RsaNI	GTAC	4 cut(s)	151, 673, 1120, 1906
RseI	CAYNNNNRTG	1 cut(s)	2291
Rsr2I	CGGWCCG	2 cut(s)	449, 578
RsrII	CGGWCCG	2 cut(s)	449, 578
SacI	GAGCTC	2 cut(s)	535, 1102
SacII	CCGCGG	1 cut(s)	2022
SaqAI	TTAA	2 cut(s)	492, 1617
SchI	GAGTC	8 cut(s)	764, 779, 1065, 1314, 1402, 1551, 1708, 2231
SduI	GDGCHC	6 cut(s)	69, 354, 535, 1102, 1580, 2285
SfaNI	GCATC	2 cut(s)	720, 1321
SfoI	GGCGCC	4 cut(s)	916, 993, 1363, 2106
Sfr303I	CCGCGG	1 cut(s)	2022
SgrAI	CRCCGGYG	1 cut(s)	1868
SgrBI	CCGCGG	1 cut(s)	2022
SinI	GGWCC	8 cut(s)	449, 578, 962, 1051, 1186, 1563, 1831, 1843
SmaI	CCCGGG	1 cut(s)	1848
SmiMI	CAYNNNNRTG	1 cut(s)	2291
SphI	GCATGC	1 cut(s)	2273
Sse9I	AATT	6 cut(s)	180, 494, 508, 608, 849, 1825
SspDI	GGCGCC	4 cut(s)	914, 991, 1361, 2104
SspMI	CTAG	2 cut(s)	504, 1055
SstI	GAGCTC	2 cut(s)	535, 1102
StyI	CCWWGG	4 cut(s)	208, 637, 1054, 1839
TaaI	ACNGT	8 cut(s)	82, 202, 1009, 1167, 1441, 2056, 2128, 2188
TaiI	ACGT	8 cut(s)	192, 279, 384, 837, 1395, 1656, 1884, 2045
TaqII	GACCGA	4 cut(s)	437, 1580, 1888, 1926
TasI	AATT	6 cut(s)	180, 494, 508, 608, 849, 1825
TfiI	GAWTC	8 cut(s)	59, 102, 111, 362, 442, 1302, 1449, 1513
Tru1I	TTAA	2 cut(s)	492, 1617
Tru9I	TTAA	2 cut(s)	492, 1617
TscAI	CASTG	2 cut(s)	152, 1170
TseFI	GTSAC	6 cut(s)	979, 1373, 2056, 2122, 2182, 2293
TseI	GCWGC	5 cut(s)	920, 1352, 1556, 1643, 2266
Tsp45I	GTSAC	6 cut(s)	979, 1373, 2056, 2122, 2182, 2293
TspDTI	ATGAA	6 cut(s)	22, 34, 82, 532, 570, 1788
TspGWI	ACGGA	4 cut(s)	975, 984, 1314, 2168
TspMI	CCCGGG	1 cut(s)	1846
TspRI	CASTG	2 cut(s)	152, 1170
Tth111I	GACNNNGTC	1 cut(s)	1379
VpaK11BI	GGWCC	8 cut(s)	449, 578, 962, 1051, 1186, 1563, 1831, 1843
XapI	RAATTY	4 cut(s)	180, 494, 608, 1825
XceI	RCATGY	3 cut(s)	694, 2212, 2273
XmaI	CCCGGG	1 cut(s)	1846
XmaJI	CCTAGG	1 cut(s)	1054
XmiI	GTMKAC	3 cut(s)	192, 750, 2085
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	2 cut(s)	504, 1055
ZraI	GACGTC	2 cut(s)	382, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.