AT4G34510

3-ketoacyl-coa synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
16491692 .. 16493762
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34510.1

Sequence Viewer

Length: 1464 bp
ATGGATGCTAATGGAGGACCTGTACAGATCCGGACCCAAAACTACGTCAAGCTTGGTTATCACTATCTGATCACTCACTTTTTTAAACTCATGTTCCTCCCTCTAATGGCTGTTTTGTTCATGAATGTCTCATTGTTAAGCCTAAACCATCTTCAGCTCTATTACAATTCCACCGGATTCATCTTCGTCATTACTCTCGCCATTGTCGGATCCATTGTCTTCTTCATGTCTCGACCTAGATCCATCTACCTTCTAGATTACTCTTGCTACCTCCCGCCTTCGAGTCAAAAAGTTAGCTACCAGAAATTCATGAACAACTCTAGTTTGATTCAAGATTTCAGCGAAACTTCTCTTGAGTTCCAGAGGAAGATCTTGATTCGCTCTGGTCTCGGTGAAGAGACTTATTTACCGGATTCTATTCACTCTATCCCTCCGCGTCCTACTATGGCTGCAGCGCGTGAAGAAGCGGAGCAGGTAATCTTCGGTGCACTCGACAATCTTTTCGAGAATACAAAAATCAATCCTAGGGAGATTGGTGTTCTTGTTGTGAATTGTAGTTTGTTTAACCCTACGCCTTCTTTATCCGCCATGATTGTTAACAAGTATAAGCTTAGAGGAAACATTAAGAGCTTTAACCTTGGAGGAATGGGATGTAGTGCTGGTGTTATCGCGGTAGATCTAGCTAGTGATATGTTACAAATCCATAGGAACACTTTTGCTCTTGTGGTTAGTACTGAGAACATCACTCAGAATTGGTATTTTGGTAACAAGAAAGCAATGTTGATCCCTAATTGCTTGTTTAGAGTTGGTGGTTCCGCGGTTCTGCTTTCGAACAAGCCTTTGGATCGAAAACGATCCAAGTATAAGCTTGTTCATACGGTCAGGACTCATAAAGGATCTGATGAGAACGCATTCAATTGTGTGTATCAAGAACAAGATGAGTGTTTGAAAACCGGAGTTTCTTTGTCTAAAGATCTTATGGCTATAGCTGGAGAAGCTTTAAAGACGAATATCACTTCTTTGGGTCCTCTGGTTCTTCCTATAAGCGAGCAGATTCTGTTCTTTGCGACTTTTGTTGCTAAGAGATTGTTCAATGACAAGAAGAAGAAGCCTTACATACCGGATTTCAAGCTTGCTTTAGATCATTTCTGTATTCACGCGGGAGGTAGAGCCGTGATTGATGAGCTAGAGAAGAGTTTAAAGCTTTCTCCAAAACATGTTGAGGCGTCTAGAATGACTTTGCATAGATTTGGAAACACTTCCTCTAGCTCTATATGGTATGAATTGGCTTACACGGAAGCTAAAGGAAGAATGAGGAAAGGAAACAGAGTTTGGCAGATTGCTTTTGGTAGCGGGTTTAAGTGTAACAGCGCGGTTTGGGTGGCTCTTCGCAATGTCGAGCCCTCGGTTAACAATCCTTGGGAACATTGCATCCATAGATATCCGGTTAAGATCGATCTTTGA

Protein Analysis

487

Amino Acids

54.91

Weight (kDa)

9.38

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 75 - 363 8e-142 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 380 - 460 5e-12 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 383 - 453 3.4e-10 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 463
AccII CGCG 6 cut(s) 436, 457, 671, 818, 1160, 1373
AccIII TCCGGA 1 cut(s) 30
AclWI GGATC 8 cut(s) 22, 204, 217, 234, 778, 849, 852, 904
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 137
AcyI GRCGYC 1 cut(s) 1226
AfaI GTAC 2 cut(s) 24, 733
AfiI CCNNNNNNNGG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 1216
AgsI TTSAA 5 cut(s) 332, 916, 949, 1093, 1129
AjuI GAANNNNNNNTTGG 4 cut(s) 824, 856, 1315, 1347
AloI GAACNNNNNNTCC 2 cut(s) 1416, 1448
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 4 cut(s) 133, 234, 392, 392
Alw44I GTGCAC 1 cut(s) 486
AlwI GGATC 8 cut(s) 22, 204, 217, 234, 778, 849, 852, 904
AlwNI CAGNNNCTG 1 cut(s) 1057
Aor13HI TCCGGA 1 cut(s) 30
ApaLI GTGCAC 1 cut(s) 486
ApeKI GCWGC 2 cut(s) 449, 452
ApoI RAATTY 1 cut(s) 305
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
Asp700I GAANNNNTTC 2 cut(s) 911, 1258
AspA2I CCTAGG 1 cut(s) 524
AspLEI GCGC 2 cut(s) 457, 1373
AspS9I GGNCC 3 cut(s) 17, 33, 1025
AsuHPI GGTGA 1 cut(s) 404
AsuII TTCGAA 1 cut(s) 830
AvaII GGWCC 3 cut(s) 17, 33, 1025
AvrII CCTAGG 1 cut(s) 524
BaeGI GKGCMC 1 cut(s) 490
BamHI GGATCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 1404
BarI GAAGNNNNNNTAC 2 cut(s) 1097, 1129
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 2 cut(s) 436, 464
BccI CCATC 2 cut(s) 156, 251
BceAI ACGGC 1 cut(s) 1157
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 4 cut(s) 133, 234, 392, 392
BfaI CTAG 9 cut(s) 237, 254, 321, 525, 680, 684, 1187, 1230, 1266
BfmI CTRYAG 2 cut(s) 450, 984
BfuAI ACCTGC 1 cut(s) 463
BglII AGATCT 3 cut(s) 369, 676, 973
BisI GCNGC 2 cut(s) 450, 453
BlnI CCTAGG 1 cut(s) 524
BlsI GCNGC 2 cut(s) 451, 454
BmcAI AGTACT 1 cut(s) 733
Bme18I GGWCC 3 cut(s) 17, 33, 1025
BmgT120I GGNCC 3 cut(s) 17, 33, 1025
BmiI GGNNCC 4 cut(s) 35, 211, 814, 1026
BmsI GCATC 1 cut(s) 1440
BpiI GAAGAC 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 1011
Bpu14I TTCGAA 1 cut(s) 830
BpuEI CTTGAG 1 cut(s) 374
Bsa29I ATCGAT 1 cut(s) 1455
BsaHI GRCGYC 1 cut(s) 1226
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 5 cut(s) 524, 637, 816, 1404, 1418
BsaWI WCCGGW 6 cut(s) 30, 173, 409, 953, 1120, 1444
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse3DI GCAATG 3 cut(s) 783, 1399, 1426
BseAI TCCGGA 1 cut(s) 30
BseCI ATCGAT 1 cut(s) 1455
BseDI CCNNGG 5 cut(s) 524, 637, 816, 1404, 1418
BseGI GGATG 3 cut(s) 10, 656, 1431
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 3 cut(s) 783, 1399, 1426
BseMII CTCAG 2 cut(s) 726, 761
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 2 cut(s) 436, 464
Bsh1236I CGCG 6 cut(s) 436, 457, 671, 818, 1160, 1373
BshVI ATCGAT 1 cut(s) 1455
BsiHKAI GWGCWC 1 cut(s) 490
BsiSI CCGG 6 cut(s) 31, 174, 410, 954, 1121, 1445
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 4 cut(s) 133, 234, 392, 392
BsmI GAATGC 1 cut(s) 911
Bso31I GGTCTC 1 cut(s) 392
Bsp119I TTCGAA 1 cut(s) 830
Bsp1286I GDGCHC 2 cut(s) 490, 1404
Bsp13I TCCGGA 1 cut(s) 30
Bsp1407I TGTACA 1 cut(s) 22
BspCNI CTCAG 2 cut(s) 727, 760
BspDI ATCGAT 1 cut(s) 1455
BspEI TCCGGA 1 cut(s) 30
BspFNI CGCG 6 cut(s) 436, 457, 671, 818, 1160, 1373
BspHI TCATGA 2 cut(s) 120, 309
BspLI GGNNCC 4 cut(s) 35, 211, 814, 1026
BspMAI CTGCAG 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 463
BspPI GGATC 8 cut(s) 22, 204, 217, 234, 778, 849, 852, 904
BspQI GCTCTTC 1 cut(s) 1392
BspT104I TTCGAA 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 392
BsrDI GCAATG 3 cut(s) 783, 1399, 1426
BsrGI TGTACA 1 cut(s) 22
BssECI CCNNGG 5 cut(s) 524, 637, 816, 1404, 1418
BssNI GRCGYC 1 cut(s) 1226
BssT1I CCWWGG 3 cut(s) 524, 637, 1418
Bst4CI ACNGT 1 cut(s) 880
Bst6I CTCTTC 3 cut(s) 390, 1187, 1392
BstACI GRCGYC 1 cut(s) 1226
BstAUI TGTACA 1 cut(s) 22
BstBI TTCGAA 1 cut(s) 830
BstC8I GCNNGC 2 cut(s) 1049, 1134
BstDEI CTNAG 4 cut(s) 611, 735, 747, 1080
BstDSI CCRYGG 1 cut(s) 816
BstF5I GGATG 3 cut(s) 10, 656, 1431
BstFNI CGCG 6 cut(s) 436, 457, 671, 818, 1160, 1373
BstHHI GCGC 2 cut(s) 457, 1373
BstMAI GTCTC 4 cut(s) 133, 234, 392, 392
BstMWI GCNNNNNNNGC 1 cut(s) 995
BstNSI RCATGY 1 cut(s) 1220
BstSFI CTRYAG 2 cut(s) 450, 984
BstSLI GKGCMC 1 cut(s) 490
BstUI CGCG 6 cut(s) 436, 457, 671, 818, 1160, 1373
BstV1I GCAGC 2 cut(s) 436, 464
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 7 cut(s) 27, 209, 239, 369, 676, 896, 973
BstYI RGATCY 7 cut(s) 27, 209, 239, 369, 676, 896, 973
Bsu15I ATCGAT 1 cut(s) 1455
BsuTUI ATCGAT 1 cut(s) 1455
BtgI CCRYGG 1 cut(s) 816
BtsCI GGATG 3 cut(s) 10, 656, 1431
BveI ACCTGC 1 cut(s) 463
Cac8I GCNNGC 2 cut(s) 1049, 1134
CaiI CAGNNNCTG 1 cut(s) 1057
CciI TCATGA 2 cut(s) 120, 309
CfoI GCGC 2 cut(s) 457, 1373
Cfr13I GGNCC 3 cut(s) 17, 33, 1025
Cfr42I CCGCGG 1 cut(s) 819
ClaI ATCGAT 1 cut(s) 1455
CseI GACGC 2 cut(s) 425, 1215
Csp6I GTAC 2 cut(s) 23, 732
CviAII CATG 6 cut(s) 91, 121, 226, 310, 589, 1217
CviQI GTAC 2 cut(s) 23, 732
DdeI CTNAG 4 cut(s) 611, 735, 747, 1080
DraI TTTAAA 3 cut(s) 85, 1002, 1200
Eam1104I CTCTTC 3 cut(s) 390, 1187, 1392
EarI CTCTTC 3 cut(s) 390, 1187, 1392
EciI GGCGGA 1 cut(s) 574
Eco130I CCWWGG 3 cut(s) 524, 637, 1418
Eco24I GRGCYC 1 cut(s) 1404
Eco31I GGTCTC 1 cut(s) 392
Eco32I GATATC 1 cut(s) 1442
Eco47I GGWCC 3 cut(s) 17, 33, 1025
Eco57I CTGAAG 1 cut(s) 137
EcoO109I RGGNCCY 2 cut(s) 17, 1025
EcoRV GATATC 1 cut(s) 1442
EcoT14I CCWWGG 3 cut(s) 524, 637, 1418
EcoT38I GRGCYC 1 cut(s) 1404
ErhI CCWWGG 3 cut(s) 524, 637, 1418
FaeI CATG 6 cut(s) 94, 124, 229, 313, 592, 1220
FatI CATG 6 cut(s) 90, 120, 225, 309, 588, 1216
FauI CCCGC 3 cut(s) 282, 1153, 1346
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 450, 453
FokI GGATG 3 cut(s) 17, 663, 1418
FriOI GRGCYC 1 cut(s) 1404
Fsp4HI GCNGC 2 cut(s) 450, 453
FspBI CTAG 9 cut(s) 237, 254, 321, 525, 680, 684, 1187, 1230, 1266
GlaI GCGC 2 cut(s) 456, 1372
GluI GCNGC 2 cut(s) 450, 453
GsuI CTGGAG 1 cut(s) 1011
HapII CCGG 6 cut(s) 31, 174, 410, 954, 1121, 1445
HgaI GACGC 2 cut(s) 425, 1215
HhaI GCGC 2 cut(s) 457, 1373
Hin1I GRCGYC 1 cut(s) 1226
Hin1II CATG 6 cut(s) 94, 124, 229, 313, 592, 1220
Hin6I GCGC 2 cut(s) 455, 1371
HinP1I GCGC 2 cut(s) 455, 1371
HincII GTYRAC 2 cut(s) 598, 1411
HindII GTYRAC 2 cut(s) 598, 1411
HindIII AAGCTT 6 cut(s) 50, 608, 866, 996, 1130, 1202
HinfI GANTC 7 cut(s) 177, 283, 328, 376, 413, 886, 1054
HpaI GTTAAC 2 cut(s) 598, 1411
HpaII CCGG 6 cut(s) 31, 174, 410, 954, 1121, 1445
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 3 cut(s) 488, 598, 1411
Hpy188I TCNGA 4 cut(s) 69, 209, 750, 901
Hpy8I GTNNAC 3 cut(s) 488, 598, 1411
HpyAV CCTTC 3 cut(s) 260, 288, 585
HpyCH4III ACNGT 1 cut(s) 880
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 4 cut(s) 452, 488, 1243, 1431
HpyF10VI GCNNNNNNNGC 1 cut(s) 995
HpyF3I CTNAG 4 cut(s) 611, 735, 747, 1080
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 1226
Hsp92II CATG 6 cut(s) 94, 124, 229, 313, 592, 1220
HspAI GCGC 2 cut(s) 455, 1371
Kpn2I TCCGGA 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 69
KspAI GTTAAC 2 cut(s) 598, 1411
KspI CCGCGG 1 cut(s) 819
LguI GCTCTTC 1 cut(s) 1392
LmnI GCTCC 1 cut(s) 469
Lsp1109I GCAGC 2 cut(s) 436, 464
LweI GCATC 1 cut(s) 1440
MaeI CTAG 9 cut(s) 237, 254, 321, 525, 680, 684, 1187, 1230, 1266
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 3 cut(s) 693, 764, 1364
MfeI CAATTG 1 cut(s) 916
MflI RGATCY 7 cut(s) 27, 209, 239, 369, 676, 896, 973
MhlI GDGCHC 2 cut(s) 490, 1404
MluCI AATT 7 cut(s) 166, 305, 550, 751, 790, 916, 1283
MlyI GAGTC 2 cut(s) 292, 880
MmeI TCCRAC 1 cut(s) 187
MroI TCCGGA 1 cut(s) 30
MroXI GAANNNNTTC 2 cut(s) 911, 1258
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 6 cut(s) 31, 174, 410, 954, 1121, 1445
MunI CAATTG 1 cut(s) 916
Mva1269I GAATGC 1 cut(s) 911
MvnI CGCG 6 cut(s) 436, 457, 671, 818, 1160, 1373
MwoI GCNNNNNNNGC 1 cut(s) 995
NlaIII CATG 6 cut(s) 94, 124, 229, 313, 592, 1220
NlaIV GGNNCC 4 cut(s) 35, 211, 814, 1026
NspI RCATGY 1 cut(s) 1220
NspV TTCGAA 1 cut(s) 830
PagI TCATGA 2 cut(s) 120, 309
PciI ACATGT 1 cut(s) 1216
PciSI GCTCTTC 1 cut(s) 1392
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PctI GAATGC 1 cut(s) 911
PdmI GAANNNNTTC 2 cut(s) 911, 1258
PfeI GAWTC 5 cut(s) 177, 328, 376, 413, 1054
PkrI GCNGC 2 cut(s) 451, 454
PleI GAGTC 2 cut(s) 291, 880
PpsI GAGTC 2 cut(s) 291, 880
PpuMI RGGWCCY 2 cut(s) 17, 1025
PscI ACATGT 1 cut(s) 1216
Psp5II RGGWCCY 2 cut(s) 17, 1025
PspN4I GGNNCC 4 cut(s) 35, 211, 814, 1026
PspPI GGNCC 3 cut(s) 17, 33, 1025
PspPPI RGGWCCY 2 cut(s) 17, 1025
PstI CTGCAG 1 cut(s) 454
PstNI CAGNNNCTG 1 cut(s) 1057
PsuI RGATCY 7 cut(s) 27, 209, 239, 369, 676, 896, 973
RsaI GTAC 2 cut(s) 24, 733
RsaNI GTAC 2 cut(s) 23, 732
SacII CCGCGG 1 cut(s) 819
SapI GCTCTTC 1 cut(s) 1392
SatI GCNGC 2 cut(s) 450, 453
Sau96I GGNCC 3 cut(s) 17, 33, 1025
ScaI AGTACT 1 cut(s) 733
SchI GAGTC 2 cut(s) 292, 880
SduI GDGCHC 2 cut(s) 490, 1404
SfaNI GCATC 1 cut(s) 1440
SfcI CTRYAG 2 cut(s) 450, 984
Sfr303I CCGCGG 1 cut(s) 819
SfuI TTCGAA 1 cut(s) 830
SgrBI CCGCGG 1 cut(s) 819
SinI GGWCC 3 cut(s) 17, 33, 1025
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 7 cut(s) 166, 305, 550, 751, 790, 916, 1283
SspMI CTAG 9 cut(s) 237, 254, 321, 525, 680, 684, 1187, 1230, 1266
StyI CCWWGG 3 cut(s) 524, 637, 1418
TaaI ACNGT 1 cut(s) 880
TaiI ACGT 1 cut(s) 48
TaqI TCGA 8 cut(s) 232, 281, 492, 504, 830, 847, 1398, 1455
TasI AATT 7 cut(s) 166, 305, 550, 751, 790, 916, 1283
TatI WGTACW 2 cut(s) 22, 731
TfiI GAWTC 5 cut(s) 177, 328, 376, 413, 1054
TseI GCWGC 2 cut(s) 449, 452
TspDTI ATGAA 8 cut(s) 109, 137, 169, 214, 298, 326, 863, 1296
TspGWI ACGGA 1 cut(s) 1310
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 3 cut(s) 17, 33, 1025
XapI RAATTY 1 cut(s) 305
XbaI TCTAGA 2 cut(s) 253, 1229
XceI RCATGY 1 cut(s) 1220
XmaJI CCTAGG 1 cut(s) 524
XmnI GAANNNNTTC 2 cut(s) 911, 1258
XspI CTAG 9 cut(s) 237, 254, 321, 525, 680, 684, 1187, 1230, 1266
ZrmI AGTACT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.