Rmu_sc0003859.1_g000044

3-ketoacyl-CoA synthase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003859.1
Physical Location & Seq
Forward (+)
153892 .. 155235
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003859.1_g000044.1.cds

Sequence Viewer

Length: 1344 bp
atgaatctagttcacattcatcagctccgactccaactccattacaatctggttagtgtcatcactagctctgctattcttgttttggcttccaccatttacattatgactcgacccagatccgtttacctcgtagactactcgtgctataagccccctaacaattggaaagtgaaataccagaagtttattaatcactccagattgatcggggcctttgatgagtcctcgctcgagtttcagcacatgattcttaagcggtctggccttggacaggagacctatctccctgaagcaatgctttccattcctcggaggctgtcaatggcggcagcgcgtgaggaggcggagcaggtgatttttggagcgttggataatctatttgcaaatactaatgtcaatcctaaggacattgggattcttgttatgaattctagtctgtttaatccaactccttcattgtcttctatgattgttaataagtacaaattgaggggaagtattaagagttataatttgggaggtatgggatgtagtgctggagttatagctgtagatcttgctaagcacctgttgcaagttcaaaagaacacttatgcagttgttgtcagcactgagaatgttactcaaaattggtaccttgggaacaagaaatccatgttggtacaaaattgtttgtttcgtgtgggtgggtctgcggttttgctctcgaacaagttatctgataggtgtagggctaagtacaagcttgtgcatatcatgaggactcatataggctctaatgataaggcatataggtgtgcttatcaagaggaggatgatgccagaaaacctggggtttcgttatcgaaggagctcatggcgattgctggtgtagcactcaagactaatatcacagctttgctcggtcctcttgtcctacctataagcgaccagcttctcttcattgctactttccttgctgacaagttgttcaatgcgaaagtcaagccttacatcccgaatttcaaactcgttttcgatcatttctgcatccatgctggtggaaggtctgtgattaatgagcttgagaagaatttgcagcttctaccagttcatgttgaggcgtcacggatgacactccacaggtttggtaacacctcctccagctcgatttggtatgagttggcttacaccgaggcaaaagggaggatacaaaaggggaaccgtgtgtggcagattgcgctcggaagcggattcaagtgtaatagcgtagtctgggaggctctccagaaagtgaaaccttctcccaatagcccttgggaagattgcattgattggtatccagtgcaaacagttctctag

Protein Analysis

447

Amino Acids

50.14

Weight (kDa)

9.47

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
Acc65I GGTACC 1 cut(s) 636
AccB1I GGYRCC 1 cut(s) 636
AccI GTMKAC 1 cut(s) 135
AccII CGCG 1 cut(s) 337
AciI CCGC 5 cut(s) 259, 329, 347, 698, 1233
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 3 cut(s) 430, 1003, 1075
AcuI CTGAAG 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 1106
AfaI GTAC 4 cut(s) 485, 638, 666, 743
AfiI CCNNNNNNNGG 2 cut(s) 274, 312
AflII CTTAAG 1 cut(s) 254
AgsI TTSAA 4 cut(s) 584, 976, 1009, 1240
AjnI CCWGG 1 cut(s) 832
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AloI GAACNNNNNNTCC 2 cut(s) 638, 670
Alw21I GWGCWC 1 cut(s) 858
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 2 cut(s) 213, 265
ApeKI GCWGC 2 cut(s) 332, 1081
ApoI RAATTY 3 cut(s) 430, 1003, 1075
AseI ATTAAT 2 cut(s) 192, 1059
Asp718I GGTACC 1 cut(s) 636
AspLEI GCGC 2 cut(s) 337, 1225
AspS9I GGNCC 2 cut(s) 213, 908
AsuHPI GGTGA 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 1 cut(s) 908
AxyI CCTNAGG 1 cut(s) 405
BanI GGYRCC 1 cut(s) 636
BanII GRGCYC 1 cut(s) 858
BauI CACGAG 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 456
Bbv12I GWGCWC 1 cut(s) 858
BbvI GCAGC 2 cut(s) 344, 1093
BciT130I CCWGG 1 cut(s) 834
BciVI GTATCC 2 cut(s) 1185, 1332
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 4 cut(s) 8, 66, 435, 1342
BfmI CTRYAG 1 cut(s) 552
BfrI CTTAAG 1 cut(s) 254
BfuAI ACCTGC 1 cut(s) 343
BfuI GTATCC 2 cut(s) 1185, 1332
BglII AGATCT 1 cut(s) 556
BisI GCNGC 3 cut(s) 330, 333, 1082
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 3 cut(s) 331, 334, 1083
Bme1390I CCNGG 1 cut(s) 834
Bme18I GGWCC 1 cut(s) 908
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 213, 908
BmiI GGNNCC 3 cut(s) 214, 638, 1205
BmrFI CCNGG 1 cut(s) 834
BmsI GCATC 2 cut(s) 811, 1041
BpiI GAAGAC 1 cut(s) 456
BpmI CTGGAG 4 cut(s) 184, 561, 1129, 1253
Bpu1102I GCTNAGC 1 cut(s) 564
BpuEI CTTGAG 2 cut(s) 866, 1088
BsaBI GATNNNNATC 1 cut(s) 1320
BsaHI GRCGYC 1 cut(s) 1106
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 6 cut(s) 268, 311, 640, 833, 1176, 1298
BsaXI ACNNNNNCTCC 4 cut(s) 21, 51, 1127, 1157
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 312
Bse1I ACTGG 2 cut(s) 1091, 1325
Bse21I CCTNAGG 1 cut(s) 405
Bse3DI GCAATG 2 cut(s) 303, 945
Bse8I GATNNNNATC 1 cut(s) 1320
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 6 cut(s) 268, 311, 640, 833, 1176, 1298
BseGI GGATG 5 cut(s) 536, 823, 996, 1032, 1119
BseJI GATNNNNATC 1 cut(s) 1320
BseLI CCNNNNNNNGG 2 cut(s) 274, 312
BseMI GCAATG 2 cut(s) 303, 945
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 2 cut(s) 1091, 1325
BseRI GAGGAG 3 cut(s) 356, 827, 1132
BseXI GCAGC 2 cut(s) 344, 1093
Bsh1236I CGCG 1 cut(s) 337
BshFI GGCC 2 cut(s) 215, 267
BshNI GGYRCC 1 cut(s) 636
BsiHKAI GWGCWC 1 cut(s) 858
BsiHKCI CYCGRG 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 274, 312
BsmAI GTCTC 1 cut(s) 272
BsnI GGCC 2 cut(s) 215, 267
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 858
Bsp143I GATC 4 cut(s) 119, 207, 556, 1021
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 5 cut(s) 259, 329, 347, 698, 1233
BspANI GGCC 2 cut(s) 215, 267
BspCNI CTCAG 1 cut(s) 607
BspFNI CGCG 1 cut(s) 337
BspHI TCATGA 1 cut(s) 759
BspLI GGNNCC 3 cut(s) 214, 638, 1205
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 636
BspTI CTTAAG 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 2 cut(s) 303, 945
BsrI ACTGG 2 cut(s) 1091, 1325
BssECI CCNNGG 6 cut(s) 268, 311, 640, 833, 1176, 1298
BssMI GATC 4 cut(s) 119, 207, 556, 1021
BssNI GRCGYC 1 cut(s) 1106
BssSI CACGAG 1 cut(s) 142
BssT1I CCWWGG 3 cut(s) 268, 640, 1298
Bst2BI CACGAG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 2 cut(s) 1208, 1336
Bst6I CTCTTC 1 cut(s) 947
BstACI GRCGYC 1 cut(s) 1106
BstAFI CTTAAG 1 cut(s) 254
BstAPI GCANNNNNTGC 1 cut(s) 574
BstDEI CTNAG 4 cut(s) 405, 564, 615, 738
BstENI CCTNNNNNAGG 1 cut(s) 272
BstF5I GGATG 5 cut(s) 536, 823, 996, 1032, 1119
BstFNI CGCG 1 cut(s) 337
BstHHI GCGC 2 cut(s) 337, 1225
BstKTI GATC 4 cut(s) 122, 210, 559, 1024
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 4 cut(s) 119, 207, 556, 1021
BstMWI GCNNNNNNNGC 3 cut(s) 574, 875, 1222
BstNI CCWGG 1 cut(s) 834
BstSCI CCNGG 1 cut(s) 832
BstSFI CTRYAG 1 cut(s) 552
BstUI CGCG 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 344, 1093
BstV2I GAAGAC 1 cut(s) 456
BstX2I RGATCY 2 cut(s) 119, 556
BstXI CCANNNNNNTGG 2 cut(s) 1043, 1130
BstYI RGATCY 2 cut(s) 119, 556
Bsu36I CCTNAGG 1 cut(s) 405
BsuI GTATCC 2 cut(s) 1185, 1332
BsuRI GGCC 2 cut(s) 215, 267
BtsCI GGATG 5 cut(s) 536, 823, 996, 1032, 1119
BtsIMutI CAGTG 2 cut(s) 612, 1332
BveI ACCTGC 1 cut(s) 343
CciI TCATGA 1 cut(s) 759
CfoI GCGC 2 cut(s) 337, 1225
Cfr13I GGNCC 2 cut(s) 213, 908
CseI GACGC 1 cut(s) 1095
Csp6I GTAC 4 cut(s) 484, 637, 665, 742
CviAII CATG 6 cut(s) 247, 658, 760, 859, 1037, 1097
CviQI GTAC 4 cut(s) 484, 637, 665, 742
DdeI CTNAG 4 cut(s) 405, 564, 615, 738
DpnI GATC 4 cut(s) 121, 209, 558, 1023
DpnII GATC 4 cut(s) 119, 207, 556, 1021
Eam1104I CTCTTC 1 cut(s) 947
EarI CTCTTC 1 cut(s) 947
EciI GGCGGA 1 cut(s) 362
Ecl136II GAGCTC 1 cut(s) 856
Eco130I CCWWGG 3 cut(s) 268, 640, 1298
Eco24I GRGCYC 1 cut(s) 858
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 908
Eco53kI GAGCTC 1 cut(s) 856
Eco57I CTGAAG 1 cut(s) 312
Eco81I CCTNAGG 1 cut(s) 405
Eco88I CYCGRG 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 856
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 832
EcoT14I CCWWGG 3 cut(s) 268, 640, 1298
EcoT38I GRGCYC 1 cut(s) 858
ErhI CCWWGG 3 cut(s) 268, 640, 1298
FaeI CATG 6 cut(s) 250, 661, 763, 862, 1040, 1100
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 6 cut(s) 246, 657, 759, 858, 1036, 1096
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 330, 333, 1082
FokI GGATG 5 cut(s) 543, 830, 983, 1019, 1126
FriOI GRGCYC 1 cut(s) 858
Fsp4HI GCNGC 3 cut(s) 330, 333, 1082
FspBI CTAG 4 cut(s) 8, 66, 435, 1342
GlaI GCGC 2 cut(s) 336, 1224
GluI GCNGC 3 cut(s) 330, 333, 1082
GsuI CTGGAG 4 cut(s) 184, 561, 1129, 1253
HaeIII GGCC 2 cut(s) 215, 267
HgaI GACGC 1 cut(s) 1095
HhaI GCGC 2 cut(s) 337, 1225
Hin1I GRCGYC 1 cut(s) 1106
Hin1II CATG 6 cut(s) 250, 661, 763, 862, 1040, 1100
Hin6I GCGC 2 cut(s) 335, 1223
HinP1I GCGC 2 cut(s) 335, 1223
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 8 cut(s) 4, 30, 109, 224, 250, 418, 766, 1236
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 3 cut(s) 13, 127, 136
Hpy188I TCNGA 4 cut(s) 29, 315, 724, 1229
Hpy188III TCNNGA 7 cut(s) 201, 709, 760, 809, 883, 1000, 1270
Hpy8I GTNNAC 3 cut(s) 13, 127, 136
HpyAV CCTTC 4 cut(s) 465, 844, 1041, 1293
HpyCH4III ACNGT 2 cut(s) 1208, 1336
HpyCH4V TGCA 8 cut(s) 386, 577, 599, 754, 1032, 1081, 1311, 1330
HpyF10VI GCNNNNNNNGC 3 cut(s) 574, 875, 1222
HpyF3I CTNAG 4 cut(s) 405, 564, 615, 738
Hsp92I GRCGYC 1 cut(s) 1106
Hsp92II CATG 6 cut(s) 250, 661, 763, 862, 1040, 1100
HspAI GCGC 2 cut(s) 335, 1223
KpnI GGTACC 1 cut(s) 640
Kzo9I GATC 4 cut(s) 119, 207, 556, 1021
LmnI GCTCC 4 cut(s) 30, 349, 365, 853
Lsp1109I GCAGC 2 cut(s) 344, 1093
LweI GCATC 2 cut(s) 811, 1041
MaeI CTAG 4 cut(s) 8, 66, 435, 1342
MaeIII GTNAC 3 cut(s) 622, 1107, 1133
MalI GATC 4 cut(s) 121, 209, 558, 1023
MboI GATC 4 cut(s) 119, 207, 556, 1021
MboII GAAGA 4 cut(s) 456, 934, 1084, 1316
MfeI CAATTG 1 cut(s) 163
MflI RGATCY 2 cut(s) 119, 556
MhlI GDGCHC 1 cut(s) 858
MluCI AATT 8 cut(s) 163, 430, 488, 514, 631, 670, 1003, 1075
MlyI GAGTC 4 cut(s) 24, 103, 233, 760
MmeI TCCRAC 4 cut(s) 52, 58, 351, 473
MseI TTAA 6 cut(s) 192, 255, 444, 477, 504, 1059
MslI CAYNNNNRTG 2 cut(s) 796, 1041
MspCI CTTAAG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 834
MunI CAATTG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 834
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 3 cut(s) 574, 875, 1222
NdeII GATC 4 cut(s) 119, 207, 556, 1021
NlaIII CATG 6 cut(s) 250, 661, 763, 862, 1040, 1100
NlaIV GGNNCC 3 cut(s) 214, 638, 1205
NmuCI GTSAC 1 cut(s) 1107
PaeR7I CTCGAG 1 cut(s) 233
PagI TCATGA 1 cut(s) 759
PaqCI CACCTGC 1 cut(s) 343
PfeI GAWTC 4 cut(s) 4, 250, 418, 1236
PkrI GCNGC 3 cut(s) 331, 334, 1083
PleI GAGTC 4 cut(s) 24, 103, 232, 760
PpsI GAGTC 4 cut(s) 24, 103, 232, 760
PshBI ATTAAT 2 cut(s) 192, 1059
PsiI TTATAA 1 cut(s) 513
Psp124BI GAGCTC 1 cut(s) 858
Psp6I CCWGG 1 cut(s) 832
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 3 cut(s) 214, 638, 1205
PspPI GGNCC 2 cut(s) 213, 908
PspXI VCTCGAGB 1 cut(s) 233
PsuI RGATCY 2 cut(s) 119, 556
RsaI GTAC 4 cut(s) 485, 638, 666, 743
RsaNI GTAC 4 cut(s) 484, 637, 665, 742
RseI CAYNNNNRTG 2 cut(s) 796, 1041
SacI GAGCTC 1 cut(s) 858
SaqAI TTAA 6 cut(s) 192, 255, 444, 477, 504, 1059
SatI GCNGC 3 cut(s) 330, 333, 1082
Sau3AI GATC 4 cut(s) 119, 207, 556, 1021
Sau96I GGNCC 2 cut(s) 213, 908
SchI GAGTC 4 cut(s) 24, 103, 233, 760
ScrFI CCNGG 1 cut(s) 834
SduI GDGCHC 1 cut(s) 858
SfaNI GCATC 2 cut(s) 811, 1041
SfcI CTRYAG 1 cut(s) 552
Sfr274I CTCGAG 1 cut(s) 233
SinI GGWCC 1 cut(s) 908
SlaI CTCGAG 1 cut(s) 233
SmiMI CAYNNNNRTG 2 cut(s) 796, 1041
SmlI CTYRAG 4 cut(s) 233, 254, 881, 1067
SmoI CTYRAG 4 cut(s) 233, 254, 881, 1067
Sse9I AATT 8 cut(s) 163, 430, 488, 514, 631, 670, 1003, 1075
SsiI CCGC 5 cut(s) 259, 329, 347, 698, 1233
SspMI CTAG 4 cut(s) 8, 66, 435, 1342
SstI GAGCTC 1 cut(s) 858
StyD4I CCNGG 1 cut(s) 832
StyI CCWWGG 3 cut(s) 268, 640, 1298
TaaI ACNGT 2 cut(s) 1208, 1336
TaqI TCGA 6 cut(s) 112, 234, 710, 848, 1020, 1151
TaqII GACCGA 1 cut(s) 896
TasI AATT 8 cut(s) 163, 430, 488, 514, 631, 670, 1003, 1075
TatI WGTACW 2 cut(s) 483, 741
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 4 cut(s) 4, 250, 418, 1236
Tru1I TTAA 6 cut(s) 192, 255, 444, 477, 504, 1059
Tru9I TTAA 6 cut(s) 192, 255, 444, 477, 504, 1059
TscAI CASTG 2 cut(s) 619, 1332
TseFI GTSAC 1 cut(s) 1107
TseI GCWGC 2 cut(s) 332, 1081
Tsp45I GTSAC 1 cut(s) 1107
TspDTI ATGAA 6 cut(s) 8, 17, 443, 447, 934, 1085
TspGWI ACGGA 2 cut(s) 112, 1126
TspRI CASTG 2 cut(s) 619, 1332
Vha464I CTTAAG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 908
VspI ATTAAT 2 cut(s) 192, 1059
XagI CCTNNNNNAGG 1 cut(s) 272
XapI RAATTY 3 cut(s) 430, 1003, 1075
XhoI CTCGAG 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 4 cut(s) 8, 66, 435, 1342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.