Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8165060.1

Orthogroup ID

OG0002307

Physical Location & Seq

Genomic Coordinates Forward (+)

25 .. 666

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8165060.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgaagtatgtgaagttggcttcccatttcttgacagccaacctcttgaaactcttgttaattcctgtaatagcagtcattgtaattgaagcctctcagatgaatctagttcacattcatcagctccgactccaactccattacaatctggttagtgtcatcactagctctgctattcttgttttggcttccaccatttacattatgactcgacccagatccgtttacctcgtagactactcgtgctataagccccctaacaattggaaagtgaaataccagaagtttattaatcactccagattgatcggggcctttgatgagtcctcgctcgagtttcagcacatgattcttaagcggtctggccttggacaggagacctatctccctgaagcaatgctttccattcctcggaggctgtcaatggcggcagcgcgtgaggaggcagagcaggtgatttttggagccttggataatctatttgcaaatactaatgtcaatcctaaggacattgggattcttgttatgaattctagtctgtttaatccaactccttcattgtcttctatgattgttaataagtacaaattgaggggaagtattaagagttataatttgggaggtatgggatgtagtgctgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009611 GO:0009628 GO:0009698 GO:0009699 GO:0009922 GO:0009987 GO:0010345 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

214

Amino Acids

23.95

Weight (kDa)

9.61

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16280 AT4G34510
fragaria_vesca	FvH4_2g08940 FvH4_2g08940
malus_domestica	MD05G1065300.v1.1 MD10G1075000.v1.1
prunus_persica	Prupe.8G096100_v2.0.a1
pyrus_communis	pycom05g05670 pycom10g05860
rosa_chinensis	RchiOBHm_Chr2g0164781 RchiOBHm_Chr6g0264551 RchiOBHm_Chr6g0266411 RchiOBHm_Chr6g0266471 RchiOBHm_Chr6g0266501
rosa_laevigata	RLG00000014100 RLG00000014245
rosa_multiflora	Rmu_co8165060.1_g000001 Rmu_sc0000578.1_g000014 Rmu_sc0000946.1_g000023 Rmu_sc0002235.1_g000037 Rmu_sc0003605.1_g000018 Rmu_sc0003859.1_g000044 Rmu_sc0008317.1_g000012
rosa_roxburghii	Rroxscaffold_175G00431910 Rroxscaffold_7G00201710
rosa_rugosa	Rorug06G0015600
rosa_samantha	Rh2BG589600 Rh2CG560200 Rh6AG133300 Rh6AG145800 Rh6AG146600 Rh6BG130800 Rh6BG146200 Rh6BG146600 Rh6CG129000 Rh6CG142700 Rh6DG116200 Rh6DG130800 Rh6DG131300
rosa_wichuraiana	Rw0G009730 Rw2G048020 Rw6G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AarI	CACCTGC	1 cut(s)	442
Acc36I	ACCTGC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	436
AciI	CCGC	2 cut(s)	358, 428
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	2 cut(s)	373, 411
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	49, 89
AluBI	AGCT	2 cut(s)	124, 168
AluI	AGCT	2 cut(s)	124, 168
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	2 cut(s)	312, 364
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	529
AseI	ATTAAT	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	466
AvaI	CYCGRG	1 cut(s)	332
AxyI	CCTNAGG	1 cut(s)	504
BauI	CACGAG	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	3 cut(s)	107, 165, 534
BfrI	CTTAAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	442
BisI	GCNGC	2 cut(s)	429, 432
BlsI	GCNGC	2 cut(s)	430, 433
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	2 cut(s)	313, 466
BpiI	GAAGAC	1 cut(s)	555
BpmI	CTGGAG	1 cut(s)	283
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	367, 410, 468
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 411
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	402
BseDI	CCNNGG	3 cut(s)	367, 410, 468
BseGI	GGATG	1 cut(s)	635
BseLI	CCNNNNNNNGG	2 cut(s)	373, 411
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	436
BshFI	GGCC	2 cut(s)	314, 366
BsiHKCI	CYCGRG	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	373, 411
BsmAI	GTCTC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	314, 366
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	332
Bsp143I	GATC	2 cut(s)	218, 306
BspACI	CCGC	2 cut(s)	358, 428
BspANI	GGCC	2 cut(s)	314, 366
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	313, 466
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	213
BspTI	CTTAAG	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	402
BssECI	CCNNGG	3 cut(s)	367, 410, 468
BssMI	GATC	2 cut(s)	218, 306
BssSI	CACGAG	1 cut(s)	241
BssT1I	CCWWGG	2 cut(s)	367, 468
Bst2BI	CACGAG	1 cut(s)	241
BstAFI	CTTAAG	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	96, 504
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	635
BstFNI	CGCG	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	2 cut(s)	221, 309
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	2 cut(s)	218, 306
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	443
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	314, 366
BtsCI	GGATG	1 cut(s)	635
BveI	ACCTGC	1 cut(s)	442
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	1 cut(s)	346
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	2 cut(s)	96, 504
DpnI	GATC	2 cut(s)	220, 308
DpnII	GATC	2 cut(s)	218, 306
Eco130I	CCWWGG	2 cut(s)	367, 468
Eco31I	GGTCTC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	411
Eco81I	CCTNAGG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	332
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	312
EcoRI	GAATTC	1 cut(s)	529
EcoT14I	CCWWGG	2 cut(s)	367, 468
ErhI	CCWWGG	2 cut(s)	367, 468
FaeI	CATG	1 cut(s)	349
FaiI	YATR	8 cut(s)	9, 206, 249, 347, 527, 569, 612, 626
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	429, 432
Fsp4HI	GCNGC	2 cut(s)	429, 432
FspBI	CTAG	3 cut(s)	107, 165, 534
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	2 cut(s)	429, 432
GsuI	CTGGAG	1 cut(s)	283
HaeIII	GGCC	2 cut(s)	314, 366
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HinfI	GANTC	6 cut(s)	103, 129, 208, 323, 349, 517
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	3 cut(s)	112, 226, 235
Hpy188I	TCNGA	3 cut(s)	99, 128, 414
Hpy188III	TCNNGA	3 cut(s)	31, 46, 300
Hpy8I	GTNNAC	3 cut(s)	112, 226, 235
HpyAV	CCTTC	1 cut(s)	564
HpyCH4V	TGCA	1 cut(s)	485
HpyF3I	CTNAG	2 cut(s)	96, 504
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	1 cut(s)	434
Kzo9I	GATC	2 cut(s)	218, 306
LmnI	GCTCC	2 cut(s)	129, 464
Lsp1109I	GCAGC	1 cut(s)	443
MaeI	CTAG	3 cut(s)	107, 165, 534
MalI	GATC	2 cut(s)	220, 308
MboI	GATC	2 cut(s)	218, 306
MboII	GAAGA	1 cut(s)	555
MfeI	CAATTG	1 cut(s)	262
MflI	RGATCY	1 cut(s)	218
MluCI	AATT	6 cut(s)	60, 84, 262, 529, 587, 613
MlyI	GAGTC	3 cut(s)	123, 202, 332
MmeI	TCCRAC	3 cut(s)	151, 157, 572
MseI	TTAA	6 cut(s)	59, 291, 354, 543, 576, 603
MspCI	CTTAAG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	436
NdeII	GATC	2 cut(s)	218, 306
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	2 cut(s)	313, 466
PaeR7I	CTCGAG	1 cut(s)	332
PaqCI	CACCTGC	1 cut(s)	442
PfeI	GAWTC	3 cut(s)	103, 349, 517
PkrI	GCNGC	2 cut(s)	430, 433
PleI	GAGTC	3 cut(s)	123, 202, 331
PpsI	GAGTC	3 cut(s)	123, 202, 331
PshBI	ATTAAT	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	612
PspN4I	GGNNCC	2 cut(s)	313, 466
PspPI	GGNCC	1 cut(s)	312
PspXI	VCTCGAGB	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
SaqAI	TTAA	6 cut(s)	59, 291, 354, 543, 576, 603
SatI	GCNGC	2 cut(s)	429, 432
Sau3AI	GATC	2 cut(s)	218, 306
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	3 cut(s)	123, 202, 332
SetI	ASST	7 cut(s)	45, 126, 170, 231, 383, 456, 625
Sfr274I	CTCGAG	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	332
SmlI	CTYRAG	2 cut(s)	332, 353
SmoI	CTYRAG	2 cut(s)	332, 353
Sse9I	AATT	6 cut(s)	60, 84, 262, 529, 587, 613
SsiI	CCGC	2 cut(s)	358, 428
SspMI	CTAG	3 cut(s)	107, 165, 534
StyI	CCWWGG	2 cut(s)	367, 468
TaqI	TCGA	2 cut(s)	211, 333
TasI	AATT	6 cut(s)	60, 84, 262, 529, 587, 613
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	3 cut(s)	103, 349, 517
Tru1I	TTAA	6 cut(s)	59, 291, 354, 543, 576, 603
Tru9I	TTAA	6 cut(s)	59, 291, 354, 543, 576, 603
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	5 cut(s)	17, 107, 116, 542, 546
TspGWI	ACGGA	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	353
VspI	ATTAAT	1 cut(s)	291
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	3 cut(s)	107, 165, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.