Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002307

Physical Location & Seq

Genomic Coordinates Reverse (-)

10622891 .. 10624868

Gene Structure 1978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1075000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGTGCATTTCTCCGGCCACCAATGGAGGAGTTCGGATCCAACAGAGCCGTCGGCTGCCGGATTTCCTGCAGACTGTGAACTTGAAGTATGTGAAATTGGGTTACCATTACTTGATAACCCATCTCCTGACTCTCTGTTTAGTTCCTCTAATGGCGGTCGTCGTCATCGAAGCCTCCCAGATGAACCCGGATGACATTCACCAGCTCTGGCTCCAGCTCCAGTACAATCTCGTCAGTGTCATTATTTTCTCTGCTATGGTTGTTTTTGGATCCACCGTTTACATTATGACCCGCCCGAGATCCGTTTACCTTGTGGACTATTCGTGTTACAAGCCGCCGTCGCATTTGCAAGTGAGATACCAGCAGTTTATGGAGCATTCGAAGCTGACAGGGGACTTCGATGAGTCCTCGCTTGAGTTCCAGCGCAAGATTCTCGAGCGCTCTGGCCTCGGAGAGGAGACTTATGTCCCTGAAGCAATGCATTACATTCCGCCGAGGCCTTCAATGGCGGCGGCTCGCGAGGAGGCAGAGCAGGTGATTTTTGGTGCATTGGACAATCTGTTTGCTAATACGAATGTTAAGCCCAAGGACATTGGTATTCTTGTTGTGAACTGTAGTTTGTTTAATCCAACACCTTCACTGTCTGCTATGATTGTTAATAAGTACAAATTGAGGGGGAATATTAGGAGTTTTAATTTGGGGGGTATGGGGTGTAGTGCTGGAGTTATAGCTGTTGATCTTGCTAAGGATATGTTGCAAATTCATAGGAATACGTACGCGGTTGTTGTTAGTACTGAGAATATTACTCAGAATTGGTACTTTGGGAACAAGAAATCCATGTTGATACCCAACTGTTTGTTCCGTGTCGGTGGGTCAGCAGTTTTGCTTTCGAATAAGTCCATGGATTGGCGTCGGGCAAAGTATAAGCTTGTCCACGTTGTGAGGACTCATTGTGGCGCTGATGATAAGGCATTTAGGTGTGTTTATCAAGAGCAGGATGATGCCGGGAAAACTGGGGTTTCTTTGTCCAAGGATCTCATGGCAATTGCCGGTGGGGCTCTTAAGACTAACATCACAACATTGGGTCCGCTTGTCCTGCCCTTAAGTGAGCAGCTTCTCTTCTTTGTTACTTTGGTTGCCAAGAAGTTGTTCAACGCAAAAGTGAAGCCTTATATACCAGATTTCAAGCTTGCTTTTGACCATTTTTGCATACACGCGGGAGGAAGGGCCGTGATTGATGAGCTTGAGAAGAATTTGCAGCTTTTACCAGTTCATGTTGAAGCGTCTCGGATGACACTCCACAGGTTCGGTAACACCTCGTCTAGTTCGATTTGGTATGAGTTGGCTTATACAGAGGCAAAGGGGAGGATGCAAAAGGGGAACCGTGTCTGGCAGATTGCTTTTGGTAGCGGTTTCAAGTGTAACAGTGCAGTGTGGGAGGCTCTTCAGAGTGTAAAACCTTCTCCTCATAGTCCATGGGAAGATTGCATTCGCGGGTATCCGGTGGAGACCGTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009611 GO:0009628 GO:0009698 GO:0009699 GO:0009922 GO:0009987 GO:0010345 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

507

Amino Acids

56.76

Weight (kDa)

9.0

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	94 - 383	2.4e-146	FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C	PF08541	400 - 480	2.7e-11	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C	PF02797	402 - 474	5e-09	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16280 AT4G34510
fragaria_vesca	FvH4_2g08940 FvH4_2g08940
malus_domestica	MD05G1065300.v1.1 MD10G1075000.v1.1
prunus_persica	Prupe.8G096100_v2.0.a1
pyrus_communis	pycom05g05670 pycom10g05860
rosa_chinensis	RchiOBHm_Chr2g0164781 RchiOBHm_Chr6g0264551 RchiOBHm_Chr6g0266411 RchiOBHm_Chr6g0266471 RchiOBHm_Chr6g0266501
rosa_laevigata	RLG00000014100 RLG00000014245
rosa_multiflora	Rmu_co8165060.1_g000001 Rmu_sc0000578.1_g000014 Rmu_sc0000946.1_g000023 Rmu_sc0002235.1_g000037 Rmu_sc0003605.1_g000018 Rmu_sc0003859.1_g000044 Rmu_sc0008317.1_g000012
rosa_roxburghii	Rroxscaffold_175G00431910 Rroxscaffold_7G00201710
rosa_rugosa	Rorug06G0015600
rosa_samantha	Rh2BG589600 Rh2CG560200 Rh6AG133300 Rh6AG145800 Rh6AG146600 Rh6BG130800 Rh6BG146200 Rh6BG146600 Rh6CG129000 Rh6CG142700 Rh6DG116200 Rh6DG130800 Rh6DG131300
rosa_wichuraiana	Rw0G009730 Rw2G048020 Rw6G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	523
AccB7I	CCANNNNNTGG	1 cut(s)	906
AccII	CGCG	4 cut(s)	519, 779, 1217, 1494
AclWI	GGATC	6 cut(s)	31, 44, 264, 277, 294, 1041
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	759, 1252
AcuI	CTGAAG	2 cut(s)	492, 1430
AcyI	GRCGYC	1 cut(s)	910
AdeI	CACNNNGTG	1 cut(s)	940
AfaI	GTAC	5 cut(s)	224, 665, 776, 793, 818
AfeI	AGCGCT	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	454, 906
AflII	CTTAAG	2 cut(s)	1061, 1102
AgsI	TTSAA	6 cut(s)	85, 504, 1153, 1186, 1280, 1417
AjuI	GAANNNNNNNTTGG	4 cut(s)	842, 874, 1133, 1165
AloI	GAACNNNNNNTCC	2 cut(s)	818, 850
AluBI	AGCT	9 cut(s)	205, 217, 385, 731, 928, 1114, 1189, 1243, 1261
AluI	AGCT	9 cut(s)	205, 217, 385, 731, 928, 1114, 1189, 1243, 1261
Alw26I	GTCTC	3 cut(s)	452, 1290, 1502
AlwI	GGATC	6 cut(s)	31, 44, 264, 277, 294, 1041
Ama87I	CYCGRG	2 cut(s)	295, 434
Aor51HI	AGCGCT	1 cut(s)	440
AoxI	GGCC	4 cut(s)	15, 445, 497, 1227
ApeKI	GCWGC	3 cut(s)	55, 1111, 1258
ApoI	RAATTY	2 cut(s)	759, 1252
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
Asp700I	GAANNNNTTC	1 cut(s)	1148
AspLEI	GCGC	3 cut(s)	426, 441, 959
AspS9I	GGNCC	2 cut(s)	1085, 1227
AsuC2I	CCSGG	2 cut(s)	188, 1006
AsuHPI	GGTGA	2 cut(s)	191, 547
AsuII	TTCGAA	2 cut(s)	380, 890
AvaI	CYCGRG	2 cut(s)	295, 434
AvaII	GGWCC	1 cut(s)	1085
BamHI	GGATCC	2 cut(s)	36, 269
BanII	GRGCYC	1 cut(s)	1060
BbvI	GCAGC	3 cut(s)	42, 1123, 1270
BccI	CCATC	1 cut(s)	129
BceAI	ACGGC	3 cut(s)	33, 322, 1214
BcgI	CGANNNNNNTGC	2 cut(s)	415, 449
BciVI	GTATCC	1 cut(s)	1509
BcnI	CCSGG	2 cut(s)	188, 1006
BcoDI	GTCTC	3 cut(s)	452, 1290, 1502
BfaI	CTAG	2 cut(s)	1323, 1519
BfmI	CTRYAG	2 cut(s)	68, 613
BfoI	RGCGCY	2 cut(s)	442, 960
BfrI	CTTAAG	2 cut(s)	1061, 1102
BfuAI	ACCTGC	1 cut(s)	523
BfuI	GTATCC	1 cut(s)	1509
BglI	GCCNNNNNGGC	1 cut(s)	1055
BisI	GCNGC	6 cut(s)	56, 335, 510, 513, 1112, 1259
BlsI	GCNGC	6 cut(s)	57, 336, 511, 514, 1113, 1260
BmcAI	AGTACT	1 cut(s)	793
Bme1390I	CCNGG	2 cut(s)	188, 1006
Bme18I	GGWCC	1 cut(s)	1085
BmeT110I	CYCGRG	2 cut(s)	295, 434
BmgT120I	GGNCC	2 cut(s)	1085, 1227
BmiI	GGNNCC	5 cut(s)	38, 212, 271, 1086, 1382
BmrFI	CCNGG	2 cut(s)	188, 1006
BmrI	ACTGGG	1 cut(s)	1023
BmsI	GCATC	2 cut(s)	991, 1359
BmuI	ACTGGG	1 cut(s)	1023
BoxI	GACNNNNGTC	2 cut(s)	464, 1514
BpmI	CTGGAG	3 cut(s)	197, 203, 741
Bpu10I	CCTNAGC	1 cut(s)	744
Bpu14I	TTCGAA	2 cut(s)	380, 890
BpuEI	CTTGAG	2 cut(s)	434, 1265
BpuMI	CCSGG	2 cut(s)	188, 1006
BsaAI	YACGTR	1 cut(s)	774
BsaHI	GRCGYC	1 cut(s)	910
BsaI	GGTCTC	1 cut(s)	1502
BsaJI	CCNNGG	6 cut(s)	448, 494, 585, 900, 1029, 1475
BsaWI	WCCGGW	1 cut(s)	1501
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 906
Bse118I	RCCGGY	1 cut(s)	1049
Bse1I	ACTGG	3 cut(s)	220, 1018, 1268
Bse3DI	GCAATG	1 cut(s)	483
BseDI	CCNNGG	6 cut(s)	448, 494, 585, 900, 1029, 1475
BseGI	GGATG	4 cut(s)	196, 1003, 1296, 1374
BseLI	CCNNNNNNNGG	2 cut(s)	454, 906
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	2 cut(s)	786, 821
BseNI	ACTGG	3 cut(s)	220, 1018, 1268
BseRI	GAGGAG	4 cut(s)	42, 470, 536, 1455
BseXI	GCAGC	3 cut(s)	42, 1123, 1270
BsgI	GTGCAG	1 cut(s)	1449
Bsh1236I	CGCG	4 cut(s)	519, 779, 1217, 1494
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	4 cut(s)	17, 447, 499, 1229
BsiEI	CGRYCG	1 cut(s)	159
BsiHKCI	CYCGRG	2 cut(s)	295, 434
BsiSI	CCGG	6 cut(s)	14, 59, 188, 1005, 1050, 1502
BsiWI	CGTACG	1 cut(s)	774
BslFI	GGGAC	2 cut(s)	407, 452
BslI	CCNNNNNNNGG	2 cut(s)	454, 906
BsmAI	GTCTC	3 cut(s)	452, 1290, 1502
BsmBI	CGTCTC	1 cut(s)	1290
BsmFI	GGGAC	2 cut(s)	407, 452
BsmI	GAATGC	2 cut(s)	376, 1488
BsnI	GGCC	4 cut(s)	17, 447, 499, 1229
Bso31I	GGTCTC	1 cut(s)	1502
BsoBI	CYCGRG	2 cut(s)	295, 434
Bsp119I	TTCGAA	2 cut(s)	380, 890
Bsp1286I	GDGCHC	1 cut(s)	1060
Bsp143I	GATC	5 cut(s)	36, 269, 299, 736, 1033
Bsp19I	CCATGG	2 cut(s)	900, 1475
Bsp68I	TCGCGA	1 cut(s)	519
BspANI	GGCC	4 cut(s)	17, 447, 499, 1229
BspCNI	CTCAG	2 cut(s)	787, 820
BspFNI	CGCG	4 cut(s)	519, 779, 1217, 1494
BspLI	GGNNCC	5 cut(s)	38, 212, 271, 1086, 1382
BspMAI	CTGCAG	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	6 cut(s)	31, 44, 264, 277, 294, 1041
BspQI	GCTCTTC	1 cut(s)	1449
BspT104I	TTCGAA	2 cut(s)	380, 890
BspTI	CTTAAG	2 cut(s)	1061, 1102
BspTNI	GGTCTC	1 cut(s)	1502
BsrDI	GCAATG	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	1049
BsrI	ACTGG	3 cut(s)	220, 1018, 1268
BssAI	RCCGGY	1 cut(s)	1049
BssECI	CCNNGG	6 cut(s)	448, 494, 585, 900, 1029, 1475
BssMI	GATC	5 cut(s)	36, 269, 299, 736, 1033
BssNI	GRCGYC	1 cut(s)	910
BssT1I	CCWWGG	4 cut(s)	585, 900, 1029, 1475
Bst4CI	ACNGT	8 cut(s)	76, 277, 614, 642, 854, 1385, 1427, 1513
Bst6I	CTCTTC	2 cut(s)	1124, 1449
BstACI	GRCGYC	1 cut(s)	910
BstAFI	CTTAAG	2 cut(s)	1061, 1102
BstBAI	YACGTR	1 cut(s)	774
BstBI	TTCGAA	2 cut(s)	380, 890
BstC8I	GCNNGC	2 cut(s)	517, 1191
BstDEI	CTNAG	3 cut(s)	744, 795, 807
BstDSI	CCRYGG	2 cut(s)	900, 1475
BstEII	GGTNACC	1 cut(s)	101
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	4 cut(s)	196, 1003, 1296, 1374
BstFNI	CGCG	4 cut(s)	519, 779, 1217, 1494
BstH2I	RGCGCY	2 cut(s)	442, 960
BstHHI	GCGC	3 cut(s)	426, 441, 959
BstKTI	GATC	5 cut(s)	39, 272, 302, 739, 1036
BstMAI	GTCTC	3 cut(s)	452, 1290, 1502
BstMBI	GATC	5 cut(s)	36, 269, 299, 736, 1033
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	4 cut(s)	340, 382, 1055, 1096
BstPAI	GACNNNNGTC	2 cut(s)	464, 1514
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	186, 1004
BstSFI	CTRYAG	2 cut(s)	68, 613
BstSNI	TACGTA	1 cut(s)	774
BstUI	CGCG	4 cut(s)	519, 779, 1217, 1494
BstV1I	GCAGC	3 cut(s)	42, 1123, 1270
BstX2I	RGATCY	4 cut(s)	36, 269, 299, 1033
BstYI	RGATCY	4 cut(s)	36, 269, 299, 1033
BsuI	GTATCC	1 cut(s)	1509
BsuRI	GGCC	4 cut(s)	17, 447, 499, 1229
BtgI	CCRYGG	2 cut(s)	900, 1475
BtsCI	GGATG	4 cut(s)	196, 1003, 1296, 1374
BtsI	GCAGTG	1 cut(s)	1437
BtsIMutI	CAGTG	4 cut(s)	241, 638, 1432, 1437
BtuMI	TCGCGA	1 cut(s)	519
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	2 cut(s)	517, 1191
CfoI	GCGC	3 cut(s)	426, 441, 959
Cfr10I	RCCGGY	1 cut(s)	1049
Cfr13I	GGNCC	2 cut(s)	1085, 1227
CseI	GACGC	2 cut(s)	899, 1272
Csp6I	GTAC	5 cut(s)	223, 664, 775, 792, 817
CviAII	CATG	5 cut(s)	838, 901, 1039, 1274, 1476
CviQI	GTAC	5 cut(s)	223, 664, 775, 792, 817
DdeI	CTNAG	3 cut(s)	744, 795, 807
DpnI	GATC	5 cut(s)	38, 271, 301, 738, 1035
DpnII	GATC	5 cut(s)	36, 269, 299, 736, 1033
DraIII	CACNNNGTG	1 cut(s)	940
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	1124, 1449
EarI	CTCTTC	2 cut(s)	1124, 1449
EciI	GGCGGA	1 cut(s)	480
Eco105I	TACGTA	1 cut(s)	774
Eco130I	CCWWGG	4 cut(s)	585, 900, 1029, 1475
Eco147I	AGGCCT	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	1060
Eco31I	GGTCTC	1 cut(s)	1502
Eco47I	GGWCC	1 cut(s)	1085
Eco47III	AGCGCT	1 cut(s)	440
Eco57I	CTGAAG	2 cut(s)	492, 1430
Eco88I	CYCGRG	2 cut(s)	295, 434
Eco91I	GGTNACC	1 cut(s)	101
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoO65I	GGTNACC	1 cut(s)	101
EcoT14I	CCWWGG	4 cut(s)	585, 900, 1029, 1475
EcoT22I	ATGCAT	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	1060
ErhI	CCWWGG	4 cut(s)	585, 900, 1029, 1475
Esp3I	CGTCTC	1 cut(s)	1290
FaeI	CATG	5 cut(s)	841, 904, 1042, 1277, 1479
FaqI	GGGAC	2 cut(s)	407, 452
FatI	CATG	5 cut(s)	837, 900, 1038, 1273, 1475
FauI	CCCGC	3 cut(s)	299, 1210, 1487
Fnu4HI	GCNGC	6 cut(s)	56, 335, 510, 513, 1112, 1259
FokI	GGATG	4 cut(s)	203, 1010, 1303, 1381
FriOI	GRGCYC	1 cut(s)	1060
Fsp4HI	GCNGC	6 cut(s)	56, 335, 510, 513, 1112, 1259
FspBI	CTAG	2 cut(s)	1323, 1519
GlaI	GCGC	3 cut(s)	425, 440, 958
GluI	GCNGC	6 cut(s)	56, 335, 510, 513, 1112, 1259
GsuI	CTGGAG	3 cut(s)	197, 203, 741
HaeII	RGCGCY	2 cut(s)	442, 960
HaeIII	GGCC	4 cut(s)	17, 447, 499, 1229
HapII	CCGG	6 cut(s)	14, 59, 188, 1005, 1050, 1502
HgaI	GACGC	2 cut(s)	899, 1272
HhaI	GCGC	3 cut(s)	426, 441, 959
Hin1I	GRCGYC	1 cut(s)	910
Hin1II	CATG	5 cut(s)	841, 904, 1042, 1277, 1479
Hin6I	GCGC	3 cut(s)	424, 439, 957
HinP1I	GCGC	3 cut(s)	424, 439, 957
HindIII	AAGCTT	2 cut(s)	926, 1187
HinfI	GANTC	4 cut(s)	130, 404, 430, 946
HpaII	CCGG	6 cut(s)	14, 59, 188, 1005, 1050, 1502
HphI	GGTGA	2 cut(s)	191, 547
Hpy166II	GTNNAC	6 cut(s)	79, 280, 307, 316, 610, 934
Hpy188I	TCNGA	5 cut(s)	36, 452, 810, 1290, 1449
Hpy188III	TCNNGA	4 cut(s)	127, 434, 518, 989
Hpy8I	GTNNAC	6 cut(s)	79, 280, 307, 316, 610, 934
Hpy99I	CGWCG	4 cut(s)	54, 164, 343, 915
HpyAV	CCTTC	4 cut(s)	510, 645, 1218, 1470
HpyCH4III	ACNGT	8 cut(s)	76, 277, 614, 642, 854, 1385, 1427, 1513
HpyCH4IV	ACGT	2 cut(s)	773, 936
HpyF10VI	GCNNNNNNNGC	4 cut(s)	340, 382, 1055, 1096
HpyF3I	CTNAG	3 cut(s)	744, 795, 807
HpySE526I	ACGT	2 cut(s)	773, 936
Hsp92I	GRCGYC	1 cut(s)	910
Hsp92II	CATG	5 cut(s)	841, 904, 1042, 1277, 1479
HspAI	GCGC	3 cut(s)	424, 439, 957
Kzo9I	GATC	5 cut(s)	36, 269, 299, 736, 1033
LguI	GCTCTTC	1 cut(s)	1449
LmnI	GCTCC	3 cut(s)	216, 222, 373
Lsp1109I	GCAGC	3 cut(s)	42, 1123, 1270
LweI	GCATC	2 cut(s)	991, 1359
MaeI	CTAG	2 cut(s)	1323, 1519
MaeII	ACGT	2 cut(s)	773, 936
MaeIII	GTNAC	5 cut(s)	101, 326, 1126, 1310, 1421
MalI	GATC	5 cut(s)	38, 271, 301, 738, 1035
MboI	GATC	5 cut(s)	36, 269, 299, 736, 1033
MboII	GAAGA	4 cut(s)	1111, 1261, 1436, 1493
MfeI	CAATTG	1 cut(s)	1044
MflI	RGATCY	4 cut(s)	36, 269, 299, 1033
MhlI	GDGCHC	1 cut(s)	1060
MluCI	AATT	7 cut(s)	95, 668, 694, 759, 811, 1044, 1252
MlyI	GAGTC	3 cut(s)	124, 413, 940
MmeI	TCCRAC	2 cut(s)	64, 653
Mph1103I	ATGCAT	1 cut(s)	483
MroXI	GAANNNNTTC	1 cut(s)	1148
MseI	TTAA	6 cut(s)	579, 624, 657, 693, 1062, 1103
MslI	CAYNNNNRTG	1 cut(s)	976
MspCI	CTTAAG	2 cut(s)	1061, 1102
MspI	CCGG	6 cut(s)	14, 59, 188, 1005, 1050, 1502
MspR9I	CCNGG	2 cut(s)	188, 1006
MunI	CAATTG	1 cut(s)	1044
Mva1269I	GAATGC	2 cut(s)	376, 1488
MvnI	CGCG	4 cut(s)	519, 779, 1217, 1494
MwoI	GCNNNNNNNGC	4 cut(s)	340, 382, 1055, 1096
NciI	CCSGG	2 cut(s)	188, 1006
NcoI	CCATGG	2 cut(s)	900, 1475
NdeII	GATC	5 cut(s)	36, 269, 299, 736, 1033
NlaIII	CATG	5 cut(s)	841, 904, 1042, 1277, 1479
NlaIV	GGNNCC	5 cut(s)	38, 212, 271, 1086, 1382
NmeAIII	GCCGAG	1 cut(s)	519
NruI	TCGCGA	1 cut(s)	519
NsiI	ATGCAT	1 cut(s)	483
NspV	TTCGAA	2 cut(s)	380, 890
PaeR7I	CTCGAG	1 cut(s)	434
PaqCI	CACCTGC	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	499
PciSI	GCTCTTC	1 cut(s)	1449
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 1325
PctI	GAATGC	2 cut(s)	376, 1488
PdmI	GAANNNNTTC	1 cut(s)	1148
PfeI	GAWTC	1 cut(s)	430
Pfl23II	CGTACG	1 cut(s)	774
PflMI	CCANNNNNTGG	1 cut(s)	906
PkrI	GCNGC	6 cut(s)	57, 336, 511, 514, 1113, 1260
PleI	GAGTC	3 cut(s)	124, 412, 940
PpsI	GAGTC	3 cut(s)	124, 412, 940
Ppu21I	YACGTR	1 cut(s)	774
PshAI	GACNNNNGTC	2 cut(s)	464, 1514
PspEI	GGTNACC	1 cut(s)	101
PspLI	CGTACG	1 cut(s)	774
PspN4I	GGNNCC	5 cut(s)	38, 212, 271, 1086, 1382
PspPI	GGNCC	2 cut(s)	1085, 1227
PstI	CTGCAG	1 cut(s)	72
PsuI	RGATCY	4 cut(s)	36, 269, 299, 1033
RruI	TCGCGA	1 cut(s)	519
RsaI	GTAC	5 cut(s)	224, 665, 776, 793, 818
RsaNI	GTAC	5 cut(s)	223, 664, 775, 792, 817
RseI	CAYNNNNRTG	1 cut(s)	976
SapI	GCTCTTC	1 cut(s)	1449
SaqAI	TTAA	6 cut(s)	579, 624, 657, 693, 1062, 1103
SatI	GCNGC	6 cut(s)	56, 335, 510, 513, 1112, 1259
Sau3AI	GATC	5 cut(s)	36, 269, 299, 736, 1033
Sau96I	GGNCC	2 cut(s)	1085, 1227
ScaI	AGTACT	1 cut(s)	793
SchI	GAGTC	3 cut(s)	124, 413, 940
ScrFI	CCNGG	2 cut(s)	188, 1006
SduI	GDGCHC	1 cut(s)	1060
SfaNI	GCATC	2 cut(s)	991, 1359
SfcI	CTRYAG	2 cut(s)	68, 613
Sfr274I	CTCGAG	1 cut(s)	434
SfuI	TTCGAA	2 cut(s)	380, 890
SinI	GGWCC	1 cut(s)	1085
SlaI	CTCGAG	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	976
SmlI	CTYRAG	5 cut(s)	413, 434, 1061, 1102, 1244
SmoI	CTYRAG	5 cut(s)	413, 434, 1061, 1102, 1244
SnaBI	TACGTA	1 cut(s)	774
Sse9I	AATT	7 cut(s)	95, 668, 694, 759, 811, 1044, 1252
SseBI	AGGCCT	1 cut(s)	499
SspI	AATATT	2 cut(s)	682, 802
SspMI	CTAG	2 cut(s)	1323, 1519
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	2 cut(s)	186, 1004
StyI	CCWWGG	4 cut(s)	585, 900, 1029, 1475
TaaI	ACNGT	8 cut(s)	76, 277, 614, 642, 854, 1385, 1427, 1513
TaiI	ACGT	2 cut(s)	776, 939
TaqI	TCGA	6 cut(s)	168, 380, 399, 435, 890, 1328
TasI	AATT	7 cut(s)	95, 668, 694, 759, 811, 1044, 1252
TatI	WGTACW	3 cut(s)	222, 663, 791
TauI	GCSGC	3 cut(s)	337, 512, 515
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	6 cut(s)	579, 624, 657, 693, 1062, 1103
Tru9I	TTAA	6 cut(s)	579, 624, 657, 693, 1062, 1103
TscAI	CASTG	4 cut(s)	241, 645, 1432, 1437
TseI	GCWGC	3 cut(s)	55, 1111, 1258
TspDTI	ATGAA	3 cut(s)	197, 752, 1262
TspGWI	ACGGA	2 cut(s)	292, 851
TspRI	CASTG	4 cut(s)	241, 645, 1432, 1437
Van91I	CCANNNNNTGG	1 cut(s)	906
Vha464I	CTTAAG	2 cut(s)	1061, 1102
VpaK11BI	GGWCC	1 cut(s)	1085
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	2 cut(s)	759, 1252
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1036
XhoI	CTCGAG	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	1148
XspI	CTAG	2 cut(s)	1323, 1519
ZrmI	AGTACT	1 cut(s)	793
Zsp2I	ATGCAT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.