Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002307

Physical Location & Seq

Genomic Coordinates Forward (+)

47151557 .. 47152999

Gene Structure 1443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014100

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAAGTATGTGAAGTTGGCTTCCCATTTCTTGACACCCAACCTCTTGATAATCTTGTTAATTTTTGTAATAACAGTCATTGTAATTGAAGCCTCTCAGATGAATCTAGATCACATTCATCAGCTCCAACTCCAACTCCATTACAATCTGGTTAGTGTCATCACTAGCTCTGCTATTCTTGTTTTGGCTTCCACCATTTACATTATGACTCGACCTAGATCCATTTACCTCGTAGACTTCTCGTGCTATAAGCCCCCTAACAATTTGAAAATGAAATACCAGAAGTTTATTAATCAGTCTAGATTGACCGGGGCCTTTGATGAGTCCTCGCTCGAGTTTCAGCGCAAGATTCTTGAGCGGTCTGGCCTTGGAGAGGAGACCTATCTCCCTGAAGCAATGCATTCCATTCCGCCGAGGCTGTCAATGGCGGCAGCGCGTGAAGAGGTGGAGCAGGTGATTTTTAGCTCGTTGGATAATCTATTTGCAAATACTAATGTCAATCCTAAGGACATTGGGATTCTTGTTATGAATTCTAGTCTGTTTAGTCCAATTCCTTCATTATCTTCTATGATTGTTAATAAGTATAAATTGAGGGGAAGTATTAAGAGTTATAATTTGGGAGGTATGGGTTGTAGTGCTGGAGTTATAGCTATAGATCTTGCTAAGGACCTGTCTAAGTACAAGCTTGTGCATATCGTGAGGACTCATATAGGCTCTAATGATAAAGCATATAGGTGTGCTTATCAAGAGGAGGACGATGCCGGCAAAGCTGGGGTTTCGTTGTCAAAGGAGCTCATGGCTATTGCTGGTGTAGCACTCAAGACTAATATCACAGCTTTTCTCGGTCCTCTTGTCCTACCTATAAGTGACCAGCTTCTCTTCATTGCTATTGTCCTTGCAAACAAGTTGTTCAATGCGAAAGTCAAGCCTTACATTCCGAATTTCAAACTCGTTTTCGATCATTTCTGCATCCATGCTGGTGGAAGGTCTGTGATTGATGAGCTAGAGAAGAATTTGCAGCTTCTACCAGTTCATGTTGAGGCATCACGGATGACACTCTACAGGTTTGGTAACACGTCCTCCAGCTCGATTTGGTATGAGTTGGCTTACACCGAGGCAAAGGGGAGGATACAAAAGGGGAACCGTGTGTGGCAGATTGCGTTCGGAAGCGGATTCAAGTGTAACAGTGTAGTCTGGGAGGCTCTCCGGAAAGCGAAACCTTCTCCCAGTAGCCCTTGGGAAGATTGCATTCATAGGTATCCAGTGCAGACTGTGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009611 GO:0009628 GO:0009698 GO:0009699 GO:0009922 GO:0009987 GO:0010345 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

427

Amino Acids

47.65

Weight (kDa)

9.21

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	67 - 224	1.3e-68	FAE1/Type III polyketide synthase-like protein
FAE1_CUT1_RppA	PF08392	225 - 302	4e-27	FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C	PF08541	320 - 400	4.6e-11	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C	PF02797	322 - 399	1.3e-08	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16280 AT4G34510
fragaria_vesca	FvH4_2g08940 FvH4_2g08940
malus_domestica	MD05G1065300.v1.1 MD10G1075000.v1.1
prunus_persica	Prupe.8G096100_v2.0.a1
pyrus_communis	pycom05g05670 pycom10g05860
rosa_chinensis	RchiOBHm_Chr2g0164781 RchiOBHm_Chr6g0264551 RchiOBHm_Chr6g0266411 RchiOBHm_Chr6g0266471 RchiOBHm_Chr6g0266501
rosa_laevigata	RLG00000014100 RLG00000014245
rosa_multiflora	Rmu_co8165060.1_g000001 Rmu_sc0000578.1_g000014 Rmu_sc0000946.1_g000023 Rmu_sc0002235.1_g000037 Rmu_sc0003605.1_g000018 Rmu_sc0003859.1_g000044 Rmu_sc0008317.1_g000012
rosa_roxburghii	Rroxscaffold_175G00431910 Rroxscaffold_7G00201710
rosa_rugosa	Rorug06G0015600
rosa_samantha	Rh2BG589600 Rh2CG560200 Rh6AG133300 Rh6AG145800 Rh6AG146600 Rh6BG130800 Rh6BG146200 Rh6BG146600 Rh6CG129000 Rh6CG142700 Rh6DG116200 Rh6DG130800 Rh6DG131300
rosa_wichuraiana	Rw0G009730 Rw2G048020 Rw6G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AarI	CACCTGC	1 cut(s)	442
Acc36I	ACCTGC	1 cut(s)	442
AccBSI	CCGCTC	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	436
AccIII	TCCGGA	1 cut(s)	1206
AciI	CCGC	4 cut(s)	358, 410, 428, 1170
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	3 cut(s)	529, 940, 1012
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflIII	ACRYGT	1 cut(s)	1074
AgsI	TTSAA	5 cut(s)	89, 268, 913, 946, 1177
AjiI	CACGTC	1 cut(s)	1077
Alw21I	GWGCWC	2 cut(s)	795, 1278
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	332
Aor13HI	TCCGGA	1 cut(s)	1206
AoxI	GGCC	2 cut(s)	312, 364
ApeKI	GCWGC	2 cut(s)	431, 1018
ApoI	RAATTY	3 cut(s)	529, 940, 1012
AseI	ATTAAT	1 cut(s)	291
AspLEI	GCGC	2 cut(s)	345, 436
AspS9I	GGNCC	3 cut(s)	312, 667, 845
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	466
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	667, 845
AxyI	CCTNAGG	1 cut(s)	504
BanII	GRGCYC	1 cut(s)	795
BauI	CACGAG	1 cut(s)	241
Bbv12I	GWGCWC	2 cut(s)	795, 1278
BbvI	GCAGC	2 cut(s)	443, 1030
BciVI	GTATCC	2 cut(s)	1122, 1269
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	7 cut(s)	107, 165, 216, 300, 534, 1004, 1279
BfmI	CTRYAG	2 cut(s)	651, 1060
BfuAI	ACCTGC	1 cut(s)	442
BfuI	GTATCC	2 cut(s)	1122, 1269
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	3 cut(s)	429, 432, 1019
BlsI	GCNGC	3 cut(s)	430, 433, 1020
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	2 cut(s)	667, 845
BmeT110I	CYCGRG	1 cut(s)	332
BmgBI	CACGTC	1 cut(s)	1077
BmgT120I	GGNCC	3 cut(s)	312, 667, 845
BmiI	GGNNCC	2 cut(s)	313, 1142
BmrFI	CCNGG	1 cut(s)	310
BmrI	ACTGGG	1 cut(s)	1221
BmsI	GCATC	3 cut(s)	748, 978, 1052
BmuI	ACTGGG	1 cut(s)	1221
BpmI	CTGGAG	2 cut(s)	660, 1066
Bpu10I	CCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	2 cut(s)	374, 803
BpuMI	CCSGG	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	5 cut(s)	309, 367, 413, 1113, 1235
BsaWI	WCCGGW	1 cut(s)	1206
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 1064, 1094
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse118I	RCCGGY	1 cut(s)	761
Bse1I	ACTGG	3 cut(s)	1028, 1227, 1262
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	2 cut(s)	402, 882
BseAI	TCCGGA	1 cut(s)	1206
BseDI	CCNNGG	5 cut(s)	309, 367, 413, 1113, 1235
BseGI	GGATG	2 cut(s)	969, 1056
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	2 cut(s)	402, 882
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	3 cut(s)	1028, 1227, 1262
BseRI	GAGGAG	2 cut(s)	389, 764
BseXI	GCAGC	2 cut(s)	443, 1030
BseYI	CCCAGC	1 cut(s)	770
Bsh1236I	CGCG	1 cut(s)	436
BshFI	GGCC	2 cut(s)	314, 366
BsiHKAI	GWGCWC	2 cut(s)	795, 1278
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	3 cut(s)	309, 762, 1207
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	371
BsmI	GAATGC	2 cut(s)	400, 1248
BsnI	GGCC	2 cut(s)	314, 366
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	2 cut(s)	795, 1278
Bsp13I	TCCGGA	1 cut(s)	1206
Bsp143I	GATC	4 cut(s)	109, 218, 655, 958
BspACI	CCGC	4 cut(s)	358, 410, 428, 1170
BspANI	GGCC	2 cut(s)	314, 366
BspCNI	CTCAG	1 cut(s)	109
BspEI	TCCGGA	1 cut(s)	1206
BspFNI	CGCG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	313, 1142
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	213
BspTNI	GGTCTC	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	358
BsrDI	GCAATG	2 cut(s)	402, 882
BsrFI	RCCGGY	1 cut(s)	761
BsrI	ACTGG	3 cut(s)	1028, 1227, 1262
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	5 cut(s)	309, 367, 413, 1113, 1235
BssMI	GATC	4 cut(s)	109, 218, 655, 958
BssSI	CACGAG	1 cut(s)	241
BssT1I	CCWWGG	2 cut(s)	367, 1235
Bst2BI	CACGAG	1 cut(s)	241
Bst4CI	ACNGT	4 cut(s)	76, 1145, 1187, 1273
Bst6I	CTCTTC	2 cut(s)	435, 884
BstAPI	GCANNNNNTGC	1 cut(s)	1273
BstC8I	GCNNGC	1 cut(s)	763
BstDEI	CTNAG	4 cut(s)	96, 504, 663, 675
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	969, 1056
BstFNI	CGCG	1 cut(s)	436
BstHHI	GCGC	2 cut(s)	345, 436
BstKTI	GATC	4 cut(s)	112, 221, 658, 961
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	4 cut(s)	109, 218, 655, 958
BstMWI	GCNNNNNNNGC	3 cut(s)	767, 812, 1273
BstSCI	CCNGG	1 cut(s)	308
BstSFI	CTRYAG	2 cut(s)	651, 1060
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	443, 1030
BstX2I	RGATCY	2 cut(s)	218, 655
BstXI	CCANNNNNNTGG	1 cut(s)	980
BstYI	RGATCY	2 cut(s)	218, 655
Bsu36I	CCTNAGG	1 cut(s)	504
BsuI	GTATCC	2 cut(s)	1122, 1269
BsuRI	GGCC	2 cut(s)	314, 366
BtrI	CACGTC	1 cut(s)	1077
BtsCI	GGATG	2 cut(s)	969, 1056
BtsIMutI	CAGTG	2 cut(s)	1192, 1269
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	763
CfoI	GCGC	2 cut(s)	345, 436
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	3 cut(s)	312, 667, 845
Csp6I	GTAC	1 cut(s)	679
CviAII	CATG	3 cut(s)	796, 974, 1034
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	4 cut(s)	96, 504, 663, 675
DpnI	GATC	4 cut(s)	111, 220, 657, 960
DpnII	GATC	4 cut(s)	109, 218, 655, 958
Eam1104I	CTCTTC	2 cut(s)	435, 884
EarI	CTCTTC	2 cut(s)	435, 884
EciI	GGCGGA	1 cut(s)	399
Ecl136II	GAGCTC	1 cut(s)	793
Eco130I	CCWWGG	2 cut(s)	367, 1235
Eco24I	GRGCYC	1 cut(s)	795
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	667, 845
Eco53kI	GAGCTC	1 cut(s)	793
Eco57I	CTGAAG	1 cut(s)	411
Eco81I	CCTNAGG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	793
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoO109I	RGGNCCY	2 cut(s)	312, 667
EcoRI	GAATTC	1 cut(s)	529
EcoT14I	CCWWGG	2 cut(s)	367, 1235
EcoT22I	ATGCAT	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	795
ErhI	CCWWGG	2 cut(s)	367, 1235
FaeI	CATG	3 cut(s)	799, 977, 1037
FatI	CATG	3 cut(s)	795, 973, 1033
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	429, 432, 1019
FokI	GGATG	2 cut(s)	956, 1063
FriOI	GRGCYC	1 cut(s)	795
Fsp4HI	GCNGC	3 cut(s)	429, 432, 1019
FspBI	CTAG	7 cut(s)	107, 165, 216, 300, 534, 1004, 1279
GlaI	GCGC	2 cut(s)	344, 435
GluI	GCNGC	3 cut(s)	429, 432, 1019
GsaI	CCCAGC	1 cut(s)	774
GsuI	CTGGAG	2 cut(s)	660, 1066
HaeIII	GGCC	2 cut(s)	314, 366
HapII	CCGG	3 cut(s)	309, 762, 1207
HhaI	GCGC	2 cut(s)	345, 436
Hin1II	CATG	3 cut(s)	799, 977, 1037
Hin6I	GCGC	2 cut(s)	343, 434
HinP1I	GCGC	2 cut(s)	343, 434
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	7 cut(s)	103, 208, 323, 349, 517, 703, 1173
HpaII	CCGG	3 cut(s)	309, 762, 1207
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	99, 939, 1166
Hpy188III	TCNNGA	9 cut(s)	31, 46, 107, 300, 353, 697, 746, 820, 1207
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	564, 978, 1230
HpyCH4III	ACNGT	4 cut(s)	76, 1145, 1187, 1273
HpyCH4IV	ACGT	1 cut(s)	1076
HpyCH4V	TGCA	8 cut(s)	400, 485, 691, 899, 969, 1018, 1248, 1267
HpyF10VI	GCNNNNNNNGC	3 cut(s)	767, 812, 1273
HpyF3I	CTNAG	4 cut(s)	96, 504, 663, 675
HpySE526I	ACGT	1 cut(s)	1076
Hsp92II	CATG	3 cut(s)	799, 977, 1037
HspAI	GCGC	2 cut(s)	343, 434
Kpn2I	TCCGGA	1 cut(s)	1206
KroI	GCCGGC	1 cut(s)	761
KroNI	GCCGGC	1 cut(s)	763
Kzo9I	GATC	4 cut(s)	109, 218, 655, 958
LmnI	GCTCC	3 cut(s)	129, 448, 790
Lsp1109I	GCAGC	2 cut(s)	443, 1030
LweI	GCATC	3 cut(s)	748, 978, 1052
MaeI	CTAG	7 cut(s)	107, 165, 216, 300, 534, 1004, 1279
MaeII	ACGT	1 cut(s)	1076
MaeIII	GTNAC	3 cut(s)	866, 1070, 1181
MalI	GATC	4 cut(s)	111, 220, 657, 960
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	4 cut(s)	109, 218, 655, 958
MboII	GAAGA	5 cut(s)	452, 555, 871, 1021, 1253
MflI	RGATCY	2 cut(s)	218, 655
MhlI	GDGCHC	2 cut(s)	795, 1278
MluCI	AATT	9 cut(s)	60, 84, 262, 529, 549, 587, 613, 940, 1012
MlyI	GAGTC	3 cut(s)	202, 332, 697
MmeI	TCCRAC	3 cut(s)	151, 157, 450
Mph1103I	ATGCAT	1 cut(s)	402
MroI	TCCGGA	1 cut(s)	1206
MroNI	GCCGGC	1 cut(s)	761
MseI	TTAA	4 cut(s)	59, 291, 576, 603
MslI	CAYNNNNRTG	2 cut(s)	733, 978
MspI	CCGG	3 cut(s)	309, 762, 1207
MspR9I	CCNGG	1 cut(s)	310
Mva1269I	GAATGC	2 cut(s)	400, 1248
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	3 cut(s)	767, 812, 1273
NaeI	GCCGGC	1 cut(s)	763
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	4 cut(s)	109, 218, 655, 958
NgoMIV	GCCGGC	1 cut(s)	761
NlaIII	CATG	3 cut(s)	799, 977, 1037
NlaIV	GGNNCC	2 cut(s)	313, 1142
NmeAIII	GCCGAG	1 cut(s)	438
NmuCI	GTSAC	1 cut(s)	866
NsiI	ATGCAT	1 cut(s)	402
PaeR7I	CTCGAG	1 cut(s)	332
PaqCI	CACCTGC	1 cut(s)	442
PctI	GAATGC	2 cut(s)	400, 1248
PdiI	GCCGGC	1 cut(s)	763
PfeI	GAWTC	4 cut(s)	103, 349, 517, 1173
PkrI	GCNGC	3 cut(s)	430, 433, 1020
PleI	GAGTC	3 cut(s)	202, 331, 697
PpsI	GAGTC	3 cut(s)	202, 331, 697
PpuMI	RGGWCCY	1 cut(s)	667
PshBI	ATTAAT	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	795
Psp5II	RGGWCCY	1 cut(s)	667
PspFI	CCCAGC	1 cut(s)	770
PspN4I	GGNNCC	2 cut(s)	313, 1142
PspPI	GGNCC	3 cut(s)	312, 667, 845
PspPPI	RGGWCCY	1 cut(s)	667
PspXI	VCTCGAGB	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	218, 655
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
RseI	CAYNNNNRTG	2 cut(s)	733, 978
SacI	GAGCTC	1 cut(s)	795
SaqAI	TTAA	4 cut(s)	59, 291, 576, 603
SatI	GCNGC	3 cut(s)	429, 432, 1019
Sau3AI	GATC	4 cut(s)	109, 218, 655, 958
Sau96I	GGNCC	3 cut(s)	312, 667, 845
SchI	GAGTC	3 cut(s)	202, 332, 697
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	2 cut(s)	795, 1278
SfaNI	GCATC	3 cut(s)	748, 978, 1052
SfcI	CTRYAG	2 cut(s)	651, 1060
Sfr274I	CTCGAG	1 cut(s)	332
SinI	GGWCC	2 cut(s)	667, 845
SlaI	CTCGAG	1 cut(s)	332
SmiMI	CAYNNNNRTG	2 cut(s)	733, 978
SmlI	CTYRAG	3 cut(s)	332, 353, 818
SmoI	CTYRAG	3 cut(s)	332, 353, 818
Sse9I	AATT	9 cut(s)	60, 84, 262, 529, 549, 587, 613, 940, 1012
SsiI	CCGC	4 cut(s)	358, 410, 428, 1170
SspMI	CTAG	7 cut(s)	107, 165, 216, 300, 534, 1004, 1279
SstI	GAGCTC	1 cut(s)	795
StyD4I	CCNGG	1 cut(s)	308
StyI	CCWWGG	2 cut(s)	367, 1235
TaaI	ACNGT	4 cut(s)	76, 1145, 1187, 1273
TaiI	ACGT	1 cut(s)	1079
TaqI	TCGA	4 cut(s)	211, 333, 957, 1088
TaqII	GACCGA	1 cut(s)	833
TasI	AATT	9 cut(s)	60, 84, 262, 529, 549, 587, 613, 940, 1012
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	4 cut(s)	103, 349, 517, 1173
Tru1I	TTAA	4 cut(s)	59, 291, 576, 603
Tru9I	TTAA	4 cut(s)	59, 291, 576, 603
TscAI	CASTG	2 cut(s)	1192, 1269
TseFI	GTSAC	1 cut(s)	866
TseI	GCWGC	2 cut(s)	431, 1018
Tsp45I	GTSAC	1 cut(s)	866
TspDTI	ATGAA	9 cut(s)	17, 107, 116, 287, 542, 546, 871, 1022, 1241
TspGWI	ACGGA	1 cut(s)	1063
TspRI	CASTG	2 cut(s)	1192, 1269
VpaK11BI	GGWCC	2 cut(s)	667, 845
VspI	ATTAAT	1 cut(s)	291
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	3 cut(s)	529, 940, 1012
XbaI	TCTAGA	2 cut(s)	106, 299
XhoI	CTCGAG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	7 cut(s)	107, 165, 216, 300, 534, 1004, 1279
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.