Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002307

Physical Location & Seq

Genomic Coordinates Forward (+)

49429567 .. 49430910

Gene Structure 1344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00201710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGAATCTAGATCACATTCATCAGCTCCAACTCCAACTCCATTACAATCTGGTTAGTGTCATCACTAGCTCTGCTATTCTTGTTTTGGCTTCCACCATTTACATTATGACTCGACCTAGATCCATTTACCTCGTAGACTACTCGTGCTATAAGCCCCCTAACAATTTGAAAATGAAATACCAAAAGTTTATTAATCAGTCTAGATTGACCGGGGCCTTTGATGAGTCCTCGCTCGAGTTTCAGCGCAAGATTCTTGAGCGGTCTGGCCTTGGAGAGGAGACCTATCTCCCTGAAGCAATGCATTCCATTCCGCCGAGGCTGTCAATGGCGGCGGCGCGTGAGGAGGCGGAGCAGGTGATTTTTAGCTCGTTGGATAATCTATTTGCAAATACTAATGTCAATCCTAAGGACATTGGGATTCTTGTTATGAATTCTAGTCTGTTTAGTCCAATTCCTTCATTATCTTCTATGATTGTTAATAAGTACAAATTGAGGGGAAGTATTAAGAGTTATAATTTGGGAGGTATGGGATGTAGTGCTGGAGTTATAGCTATAGATCTTGCTAAGGACCTGTTGCAAGTTCAAAAGAACACTTATGCAGTTGTTGTTAGCACTGAGAATATTACTAAAAATGGGTACCTTGGGAACAAGAAATCCATGTTGGTACAAAATTGTTTGTTTCGTATGGGTGGGTCAGCGGTTTTGCTCTCAAACAAGTTATCTGATAGGAGTAGGGCTAAGTACAAGCTTGTGCATATCGTGAGGACTCATATAGGCTCTAACGATAAAGCATATAGGTGTGCTTATCAAGAGGAGGACGATGCCGGCAAAGCTGGGGTTTCGTTGTCAAAGGAGCTCATGGCTATTGCTGGTGTAGCACTCAAGACTAATATCACAGCTTTTCTCGGTCCTCTTGTCCTACCTATAAGTGACCAGCTTCTCTTCATTGCTATTGTCCTCGCAAACAAGTTGTTCAATGCGAAAGTCAAGCCTTACATTCCGAATTTCAAACTCGTTTTCGATCATTTCTGCATCCATGCTGGTGGAAGGTCTGTGATTGATGAGCTTGAGAAGAATTTGCAGCTTCTACCAGTTCATGTTGAGGCATCAAGGATGACACTCTACAGGTTTGGTAACACCTCCTCCAGCTCGATTTGGTATGAGTTGGCTTACACCGAGGCAAAGGGGAGGATACAAAAGGGGAACCGTGTGTGGCAGATTGCGTTCGGAAGCGGATTCAAGTGTAACAGTGTAGTCTGGGAGGCTCTCCGGAAAGCGAAACCTTCTCCCAGTAGCCCTTGGGAAGATTGCATTCATACGTATCCAGTGCAGACTGTGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009611 GO:0009628 GO:0009698 GO:0009699 GO:0009922 GO:0009987 GO:0010345 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

447

Amino Acids

49.8

Weight (kDa)

9.35

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	34 - 323	3.3e-135	FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C	PF08541	341 - 421	5e-11	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C	PF02797	343 - 420	1.4e-08	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16280 AT4G34510
fragaria_vesca	FvH4_2g08940 FvH4_2g08940
malus_domestica	MD05G1065300.v1.1 MD10G1075000.v1.1
prunus_persica	Prupe.8G096100_v2.0.a1
pyrus_communis	pycom05g05670 pycom10g05860
rosa_chinensis	RchiOBHm_Chr2g0164781 RchiOBHm_Chr6g0264551 RchiOBHm_Chr6g0266411 RchiOBHm_Chr6g0266471 RchiOBHm_Chr6g0266501
rosa_laevigata	RLG00000014100 RLG00000014245
rosa_multiflora	Rmu_co8165060.1_g000001 Rmu_sc0000578.1_g000014 Rmu_sc0000946.1_g000023 Rmu_sc0002235.1_g000037 Rmu_sc0003605.1_g000018 Rmu_sc0003859.1_g000044 Rmu_sc0008317.1_g000012
rosa_roxburghii	Rroxscaffold_175G00431910 Rroxscaffold_7G00201710
rosa_rugosa	Rorug06G0015600
rosa_samantha	Rh2BG589600 Rh2CG560200 Rh6AG133300 Rh6AG145800 Rh6AG146600 Rh6BG130800 Rh6BG146200 Rh6BG146600 Rh6CG129000 Rh6CG142700 Rh6DG116200 Rh6DG130800 Rh6DG131300
rosa_wichuraiana	Rw0G009730 Rw2G048020 Rw6G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AarI	CACCTGC	1 cut(s)	343
Acc36I	ACCTGC	1 cut(s)	343
Acc65I	GGTACC	1 cut(s)	636
AccB1I	GGYRCC	1 cut(s)	636
AccBSI	CCGCTC	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	337
AccIII	TCCGGA	1 cut(s)	1269
AciI	CCGC	7 cut(s)	259, 311, 329, 332, 347, 698, 1233
AclWI	GGATC	1 cut(s)	114
AcsI	RAATTY	3 cut(s)	430, 1003, 1075
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	4 cut(s)	485, 638, 666, 743
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	5 cut(s)	169, 584, 976, 1009, 1240
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AloI	GAACNNNNNNTCC	2 cut(s)	638, 670
Alw21I	GWGCWC	2 cut(s)	858, 1341
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	1269
AoxI	GGCC	2 cut(s)	213, 265
ApeKI	GCWGC	1 cut(s)	1081
ApoI	RAATTY	3 cut(s)	430, 1003, 1075
AseI	ATTAAT	1 cut(s)	192
Asp718I	GGTACC	1 cut(s)	636
AspLEI	GCGC	2 cut(s)	246, 337
AspS9I	GGNCC	3 cut(s)	213, 568, 908
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	568, 908
AxyI	CCTNAGG	1 cut(s)	405
BanI	GGYRCC	1 cut(s)	636
BanII	GRGCYC	1 cut(s)	858
BauI	CACGAG	1 cut(s)	142
Bbv12I	GWGCWC	2 cut(s)	858, 1341
BbvI	GCAGC	1 cut(s)	1093
BciVI	GTATCC	2 cut(s)	1185, 1332
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	6 cut(s)	8, 66, 117, 201, 435, 1342
BfmI	CTRYAG	2 cut(s)	552, 1123
BfuAI	ACCTGC	1 cut(s)	343
BfuI	GTATCC	2 cut(s)	1185, 1332
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	3 cut(s)	330, 333, 1082
BlsI	GCNGC	3 cut(s)	331, 334, 1083
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	2 cut(s)	568, 908
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	3 cut(s)	213, 568, 908
BmiI	GGNNCC	3 cut(s)	214, 638, 1205
BmrFI	CCNGG	1 cut(s)	211
BmrI	ACTGGG	1 cut(s)	1284
BmsI	GCATC	3 cut(s)	811, 1041, 1115
BmuI	ACTGGG	1 cut(s)	1284
BpmI	CTGGAG	2 cut(s)	561, 1129
Bpu10I	CCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	3 cut(s)	275, 866, 1088
BpuMI	CCSGG	1 cut(s)	211
BsaAI	YACGTR	1 cut(s)	1320
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	6 cut(s)	210, 268, 314, 640, 1176, 1298
BsaWI	WCCGGW	1 cut(s)	1269
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 1127, 1157
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	824
Bse1I	ACTGG	3 cut(s)	1091, 1290, 1325
Bse21I	CCTNAGG	1 cut(s)	405
Bse3DI	GCAATG	2 cut(s)	303, 945
BseAI	TCCGGA	1 cut(s)	1269
BseDI	CCNNGG	6 cut(s)	210, 268, 314, 640, 1176, 1298
BseGI	GGATG	3 cut(s)	536, 1032, 1119
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	2 cut(s)	303, 945
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	3 cut(s)	1091, 1290, 1325
BseRI	GAGGAG	4 cut(s)	290, 356, 827, 1132
BseXI	GCAGC	1 cut(s)	1093
BseYI	CCCAGC	1 cut(s)	833
Bsh1236I	CGCG	1 cut(s)	337
BshFI	GGCC	2 cut(s)	215, 267
BshNI	GGYRCC	1 cut(s)	636
BsiHKAI	GWGCWC	2 cut(s)	858, 1341
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	3 cut(s)	210, 825, 1270
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	272
BsmI	GAATGC	2 cut(s)	301, 1311
BsnI	GGCC	2 cut(s)	215, 267
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	858, 1341
Bsp13I	TCCGGA	1 cut(s)	1269
Bsp143I	GATC	4 cut(s)	10, 119, 556, 1021
BspACI	CCGC	7 cut(s)	259, 311, 329, 332, 347, 698, 1233
BspANI	GGCC	2 cut(s)	215, 267
BspCNI	CTCAG	1 cut(s)	607
BspEI	TCCGGA	1 cut(s)	1269
BspFNI	CGCG	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	214, 638, 1205
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	636
BspTNI	GGTCTC	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	2 cut(s)	303, 945
BsrFI	RCCGGY	1 cut(s)	824
BsrI	ACTGG	3 cut(s)	1091, 1290, 1325
BssAI	RCCGGY	1 cut(s)	824
BssECI	CCNNGG	6 cut(s)	210, 268, 314, 640, 1176, 1298
BssMI	GATC	4 cut(s)	10, 119, 556, 1021
BssSI	CACGAG	1 cut(s)	142
BssT1I	CCWWGG	3 cut(s)	268, 640, 1298
Bst2BI	CACGAG	1 cut(s)	142
Bst4CI	ACNGT	3 cut(s)	1208, 1250, 1336
Bst6I	CTCTTC	1 cut(s)	947
BstAPI	GCANNNNNTGC	1 cut(s)	1336
BstBAI	YACGTR	1 cut(s)	1320
BstC8I	GCNNGC	1 cut(s)	826
BstDEI	CTNAG	4 cut(s)	405, 564, 615, 738
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstF5I	GGATG	3 cut(s)	536, 1032, 1119
BstFNI	CGCG	1 cut(s)	337
BstHHI	GCGC	2 cut(s)	246, 337
BstKTI	GATC	4 cut(s)	13, 122, 559, 1024
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	4 cut(s)	10, 119, 556, 1021
BstMWI	GCNNNNNNNGC	3 cut(s)	830, 875, 1336
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	2 cut(s)	552, 1123
BstSNI	TACGTA	1 cut(s)	1320
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	1093
BstX2I	RGATCY	2 cut(s)	119, 556
BstXI	CCANNNNNNTGG	1 cut(s)	1043
BstYI	RGATCY	2 cut(s)	119, 556
Bsu36I	CCTNAGG	1 cut(s)	405
BsuI	GTATCC	2 cut(s)	1185, 1332
BsuRI	GGCC	2 cut(s)	215, 267
BtsCI	GGATG	3 cut(s)	536, 1032, 1119
BtsIMutI	CAGTG	3 cut(s)	612, 1255, 1332
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	826
CfoI	GCGC	2 cut(s)	246, 337
Cfr10I	RCCGGY	1 cut(s)	824
Cfr13I	GGNCC	3 cut(s)	213, 568, 908
Csp6I	GTAC	4 cut(s)	484, 637, 665, 742
CviAII	CATG	4 cut(s)	658, 859, 1037, 1097
CviQI	GTAC	4 cut(s)	484, 637, 665, 742
DdeI	CTNAG	4 cut(s)	405, 564, 615, 738
DpnI	GATC	4 cut(s)	12, 121, 558, 1023
DpnII	GATC	4 cut(s)	10, 119, 556, 1021
Eam1104I	CTCTTC	1 cut(s)	947
EarI	CTCTTC	1 cut(s)	947
EciI	GGCGGA	2 cut(s)	300, 362
Ecl136II	GAGCTC	1 cut(s)	856
Eco105I	TACGTA	1 cut(s)	1320
Eco130I	CCWWGG	3 cut(s)	268, 640, 1298
Eco24I	GRGCYC	1 cut(s)	858
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	568, 908
Eco53kI	GAGCTC	1 cut(s)	856
Eco57I	CTGAAG	1 cut(s)	312
Eco81I	CCTNAGG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	856
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoO109I	RGGNCCY	2 cut(s)	213, 568
EcoRI	GAATTC	1 cut(s)	430
EcoT14I	CCWWGG	3 cut(s)	268, 640, 1298
EcoT22I	ATGCAT	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	858
ErhI	CCWWGG	3 cut(s)	268, 640, 1298
FaeI	CATG	4 cut(s)	661, 862, 1040, 1100
FatI	CATG	4 cut(s)	657, 858, 1036, 1096
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	330, 333, 1082
FokI	GGATG	3 cut(s)	543, 1019, 1126
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	3 cut(s)	330, 333, 1082
FspBI	CTAG	6 cut(s)	8, 66, 117, 201, 435, 1342
GlaI	GCGC	2 cut(s)	245, 336
GluI	GCNGC	3 cut(s)	330, 333, 1082
GsaI	CCCAGC	1 cut(s)	837
GsuI	CTGGAG	2 cut(s)	561, 1129
HaeIII	GGCC	2 cut(s)	215, 267
HapII	CCGG	3 cut(s)	210, 825, 1270
HhaI	GCGC	2 cut(s)	246, 337
Hin1II	CATG	4 cut(s)	661, 862, 1040, 1100
Hin6I	GCGC	2 cut(s)	244, 335
HinP1I	GCGC	2 cut(s)	244, 335
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	7 cut(s)	4, 109, 224, 250, 418, 766, 1236
HpaII	CCGG	3 cut(s)	210, 825, 1270
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	3 cut(s)	724, 1002, 1229
Hpy188III	TCNNGA	7 cut(s)	8, 201, 254, 760, 809, 883, 1270
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	465, 1041, 1293
HpyCH4III	ACNGT	3 cut(s)	1208, 1250, 1336
HpyCH4IV	ACGT	1 cut(s)	1319
HpyCH4V	TGCA	9 cut(s)	301, 386, 577, 599, 754, 1032, 1081, 1311, 1330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	830, 875, 1336
HpyF3I	CTNAG	4 cut(s)	405, 564, 615, 738
HpySE526I	ACGT	1 cut(s)	1319
Hsp92II	CATG	4 cut(s)	661, 862, 1040, 1100
HspAI	GCGC	2 cut(s)	244, 335
Kpn2I	TCCGGA	1 cut(s)	1269
KpnI	GGTACC	1 cut(s)	640
KroI	GCCGGC	1 cut(s)	824
KroNI	GCCGGC	1 cut(s)	826
Kzo9I	GATC	4 cut(s)	10, 119, 556, 1021
LmnI	GCTCC	3 cut(s)	30, 349, 853
Lsp1109I	GCAGC	1 cut(s)	1093
LweI	GCATC	3 cut(s)	811, 1041, 1115
MaeI	CTAG	6 cut(s)	8, 66, 117, 201, 435, 1342
MaeII	ACGT	1 cut(s)	1319
MaeIII	GTNAC	3 cut(s)	929, 1133, 1244
MalI	GATC	4 cut(s)	12, 121, 558, 1023
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	4 cut(s)	10, 119, 556, 1021
MboII	GAAGA	4 cut(s)	456, 934, 1084, 1316
MflI	RGATCY	2 cut(s)	119, 556
MhlI	GDGCHC	2 cut(s)	858, 1341
MluCI	AATT	8 cut(s)	163, 430, 450, 488, 514, 670, 1003, 1075
MlyI	GAGTC	3 cut(s)	103, 233, 760
MmeI	TCCRAC	3 cut(s)	52, 58, 351
Mph1103I	ATGCAT	1 cut(s)	303
MroI	TCCGGA	1 cut(s)	1269
MroNI	GCCGGC	1 cut(s)	824
MseI	TTAA	3 cut(s)	192, 477, 504
MslI	CAYNNNNRTG	2 cut(s)	796, 1041
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	3 cut(s)	210, 825, 1270
MspR9I	CCNGG	1 cut(s)	211
Mva1269I	GAATGC	2 cut(s)	301, 1311
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	3 cut(s)	830, 875, 1336
NaeI	GCCGGC	1 cut(s)	826
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	4 cut(s)	10, 119, 556, 1021
NgoMIV	GCCGGC	1 cut(s)	824
NlaIII	CATG	4 cut(s)	661, 862, 1040, 1100
NlaIV	GGNNCC	3 cut(s)	214, 638, 1205
NmeAIII	GCCGAG	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	929
NsiI	ATGCAT	1 cut(s)	303
PaeR7I	CTCGAG	1 cut(s)	233
PaqCI	CACCTGC	1 cut(s)	343
PctI	GAATGC	2 cut(s)	301, 1311
PdiI	GCCGGC	1 cut(s)	826
PfeI	GAWTC	4 cut(s)	4, 250, 418, 1236
PkrI	GCNGC	3 cut(s)	331, 334, 1083
PleI	GAGTC	3 cut(s)	103, 232, 760
PpsI	GAGTC	3 cut(s)	103, 232, 760
Ppu21I	YACGTR	1 cut(s)	1320
PpuMI	RGGWCCY	1 cut(s)	568
PshBI	ATTAAT	1 cut(s)	192
PsiI	TTATAA	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	858
Psp5II	RGGWCCY	1 cut(s)	568
PspFI	CCCAGC	1 cut(s)	833
PspN4I	GGNNCC	3 cut(s)	214, 638, 1205
PspPI	GGNCC	3 cut(s)	213, 568, 908
PspPPI	RGGWCCY	1 cut(s)	568
PspXI	VCTCGAGB	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	119, 556
RsaI	GTAC	4 cut(s)	485, 638, 666, 743
RsaNI	GTAC	4 cut(s)	484, 637, 665, 742
RseI	CAYNNNNRTG	2 cut(s)	796, 1041
SacI	GAGCTC	1 cut(s)	858
SaqAI	TTAA	3 cut(s)	192, 477, 504
SatI	GCNGC	3 cut(s)	330, 333, 1082
Sau3AI	GATC	4 cut(s)	10, 119, 556, 1021
Sau96I	GGNCC	3 cut(s)	213, 568, 908
SchI	GAGTC	3 cut(s)	103, 233, 760
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	2 cut(s)	858, 1341
SfaNI	GCATC	3 cut(s)	811, 1041, 1115
SfcI	CTRYAG	2 cut(s)	552, 1123
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	2 cut(s)	568, 908
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	796, 1041
SmlI	CTYRAG	4 cut(s)	233, 254, 881, 1067
SmoI	CTYRAG	4 cut(s)	233, 254, 881, 1067
SnaBI	TACGTA	1 cut(s)	1320
Sse9I	AATT	8 cut(s)	163, 430, 450, 488, 514, 670, 1003, 1075
SsiI	CCGC	7 cut(s)	259, 311, 329, 332, 347, 698, 1233
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	6 cut(s)	8, 66, 117, 201, 435, 1342
SstI	GAGCTC	1 cut(s)	858
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	3 cut(s)	268, 640, 1298
TaaI	ACNGT	3 cut(s)	1208, 1250, 1336
TaiI	ACGT	1 cut(s)	1322
TaqI	TCGA	4 cut(s)	112, 234, 1020, 1151
TaqII	GACCGA	1 cut(s)	896
TasI	AATT	8 cut(s)	163, 430, 450, 488, 514, 670, 1003, 1075
TatI	WGTACW	2 cut(s)	483, 741
TauI	GCSGC	2 cut(s)	332, 335
TfiI	GAWTC	4 cut(s)	4, 250, 418, 1236
Tru1I	TTAA	3 cut(s)	192, 477, 504
Tru9I	TTAA	3 cut(s)	192, 477, 504
TscAI	CASTG	3 cut(s)	619, 1255, 1332
TseFI	GTSAC	1 cut(s)	929
TseI	GCWGC	1 cut(s)	1081
Tsp45I	GTSAC	1 cut(s)	929
TspDTI	ATGAA	8 cut(s)	8, 17, 188, 443, 447, 934, 1085, 1304
TspRI	CASTG	3 cut(s)	619, 1255, 1332
VpaK11BI	GGWCC	2 cut(s)	568, 908
VspI	ATTAAT	1 cut(s)	192
XagI	CCTNNNNNAGG	1 cut(s)	272
XapI	RAATTY	3 cut(s)	430, 1003, 1075
XbaI	TCTAGA	2 cut(s)	7, 200
XhoI	CTCGAG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	6 cut(s)	8, 66, 117, 201, 435, 1342
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.