Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004631

Physical Location & Seq

Genomic Coordinates Forward (+)

7248138 .. 7250308

Gene Structure 2171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G16710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAAGCTTCTCAAATTTTGGCGGCTGCAGCGGCGAGGGTTGGACCGGCGTTAAGGAAGCAAGTATTAACCTTAACGGACGAAGCTGCTTCTAGGGTTCATCATCTCTTGCAACAGCGTCAAAAACCTTTTCTCCGATTAGGCGTTAAGGCTCGTGGCTGCAACGGCTTGTCGTACACTCTCAATTACGCCGATGAGAAAGGTAAATTTGACGAGTTGGTAGAAGAGAAAGGTGTGAGGATCCTTGTTGAACCAAAGGCCTTAATGCATGTGATTGGAACAAAGATGGATTTTGTAGATGATAAACTCAGATCAGAGTTTGTGTTTATCAATCCTAACTCACAAGGACAATGCGGGTGTGGTGAATCGTTTATGACAACATCTACCTCTAGTGCTAAGCAGAGTGCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

137

Amino Acids

14.99

Weight (kDa)

9.27

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-S_biosyn	PF01521	23 - 122	7.2e-19	Iron-sulphur cluster biosynthesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16710 AT2G16710 AT2G16710
fragaria_vesca	FvH4_6g18590
malus_domestica	MD12G1035500.v1.1 MD14G1022300.v1.1
prunus_persica	Prupe.7G111000_v2.0.a1
pyrus_communis	pycom12g02330 pycom14g02130
rosa_chinensis	RchiOBHm_Chr3g0473171 RchiOBHm_Chr6g0270521
rosa_laevigata	RLG00000024023
rosa_multiflora	Rmu_sc0004171.1_g000005 Rmu_sc0004477.1_g000002 Rmu_sc0039741.1_g000002 Rmu_sc0040292.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408250 Rroxscaffold_7G00197770 Rroxscaffold_7G00197850
rosa_rugosa	Rorug03G0132000 Rorug06G0055200
rosa_samantha	Rh3BG210000 Rh3CG207100 Rh3DG207200 Rh6AG174400 Rh6CG173600
rosa_wichuraiana	Rw0G008110 Rw0G019030 Rw6G014830 Rw6G014860 Rw7G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	23, 32, 354
AclWI	GGATC	2 cut(s)	235, 248
AcsI	RAATTY	2 cut(s)	15, 206
AfaI	GTAC	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	251
AluBI	AGCT	2 cut(s)	8, 86
AluI	AGCT	2 cut(s)	8, 86
AlwI	GGATC	2 cut(s)	235, 248
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	4 cut(s)	26, 29, 86, 159
ApoI	RAATTY	2 cut(s)	15, 206
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	44
BamHI	GGATCC	1 cut(s)	240
BauI	CACGAG	1 cut(s)	153
BbvI	GCAGC	4 cut(s)	13, 41, 73, 146
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	181
BfaI	CTAG	3 cut(s)	93, 390, 408
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	6 cut(s)	24, 27, 30, 33, 87, 160
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	6 cut(s)	25, 28, 31, 34, 88, 161
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	242
Bpu1102I	GCTNAGC	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bse118I	RCCGGY	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	322
BseXI	GCAGC	4 cut(s)	13, 41, 73, 146
BshFI	GGCC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	47
BsnI	GGCC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	240, 311
Bsp1720I	GCTNAGC	1 cut(s)	396
BspACI	CCGC	3 cut(s)	23, 32, 354
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	242
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	2 cut(s)	235, 248
BsrFI	RCCGGY	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	46
BssMI	GATC	2 cut(s)	240, 311
BssSI	CACGAG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	308, 396
BstKTI	GATC	2 cut(s)	243, 314
BstMBI	GATC	2 cut(s)	240, 311
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 32, 165
BstNSI	RCATGY	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	4 cut(s)	13, 41, 73, 146
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	7 cut(s)	8, 26, 86, 152, 159, 168, 260
CviKI_1	RGCY	7 cut(s)	8, 26, 86, 152, 159, 168, 260
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	308, 396
DpnI	GATC	2 cut(s)	242, 313
DpnII	GATC	2 cut(s)	240, 311
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	44
EcoT22I	ATGCAT	1 cut(s)	270
FaeI	CATG	1 cut(s)	272
FaiI	YATR	2 cut(s)	270, 374
FatI	CATG	1 cut(s)	268
FauI	CCCGC	1 cut(s)	347
Fnu4HI	GCNGC	6 cut(s)	24, 27, 30, 33, 87, 160
Fsp4HI	GCNGC	6 cut(s)	24, 27, 30, 33, 87, 160
FspBI	CTAG	3 cut(s)	93, 390, 408
GluI	GCNGC	6 cut(s)	24, 27, 30, 33, 87, 160
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	272
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	3 cut(s)	137, 311, 316
Hpy8I	GTNNAC	1 cut(s)	177
HpyCH4V	TGCA	4 cut(s)	29, 112, 162, 268
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 32, 165
HpyF3I	CTNAG	2 cut(s)	308, 396
Hsp92II	CATG	1 cut(s)	272
Kzo9I	GATC	2 cut(s)	240, 311
LpnPI	CCDG	1 cut(s)	60
Lsp1109I	GCAGC	4 cut(s)	13, 41, 73, 146
MaeI	CTAG	3 cut(s)	93, 390, 408
MalI	GATC	2 cut(s)	242, 313
MboI	GATC	2 cut(s)	240, 311
MboII	GAAGA	1 cut(s)	236
MflI	RGATCY	1 cut(s)	240
MluCI	AATT	3 cut(s)	15, 184, 206
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	3 cut(s)	30, 231, 397
Mph1103I	ATGCAT	1 cut(s)	270
MseI	TTAA	6 cut(s)	53, 68, 74, 147, 263, 412
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	29, 32, 165
NdeII	GATC	2 cut(s)	240, 311
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	242
NsiI	ATGCAT	1 cut(s)	270
NspI	RCATGY	1 cut(s)	272
PceI	AGGCCT	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	6 cut(s)	25, 28, 31, 34, 88, 161
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	240
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	6 cut(s)	53, 68, 74, 147, 263, 412
SatI	GCNGC	6 cut(s)	24, 27, 30, 33, 87, 160
Sau3AI	GATC	2 cut(s)	240, 311
Sau96I	GGNCC	1 cut(s)	44
SetI	ASST	7 cut(s)	10, 74, 88, 130, 205, 235, 389
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	44
Sse9I	AATT	3 cut(s)	15, 184, 206
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	3 cut(s)	23, 32, 354
SspMI	CTAG	3 cut(s)	93, 390, 408
StuI	AGGCCT	1 cut(s)	260
TasI	AATT	3 cut(s)	15, 184, 206
TauI	GCSGC	2 cut(s)	26, 35
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	6 cut(s)	53, 68, 74, 147, 263, 412
Tru9I	TTAA	6 cut(s)	53, 68, 74, 147, 263, 412
TseI	GCWGC	4 cut(s)	26, 29, 86, 159
TspDTI	ATGAA	2 cut(s)	17, 89
TspGWI	ACGGA	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	15, 206
XceI	RCATGY	1 cut(s)	272
XspI	CTAG	3 cut(s)	93, 390, 408
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.