Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004631

Physical Location & Seq

Genomic Coordinates Reverse (-)

2022108 .. 2024060

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTTCGCAAATTCTGGCGGCGGCAGCCGAGAGGGTCGGACCGGTGGCGAGGCGACAGGCCGTGAGCTTGACAGACGCGGCGGCGAATCGTATACGGCAGCTCCTAGAGCAGCGCCGGCGGCCATATCTCAAGCTCGGAGTCAAGGCCCGCGGCTGCAACGGCTTGTCCTACACTCTCAATTACGCAGATGACAAGGGGAAGTTCGACGAATTGGTGGAGGATAAAGGTGTGAAGGTTTTGATTGATCCGAAGGCTCTGATGCACGTCATAGGAACGAAGATGGATTTTATAGATGATAAACTCAGGTCTGAGTTCGTATTCATCAATCCCAACTCTAAAGGACAGTGTGGCTGTGGGGAATCTTTCATGACAACAGACGGTAGCGGAGCTACCAAGAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

136

Amino Acids

14.76

Weight (kDa)

9.37

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16710 AT2G16710 AT2G16710
fragaria_vesca	FvH4_6g18590
malus_domestica	MD12G1035500.v1.1 MD14G1022300.v1.1
prunus_persica	Prupe.7G111000_v2.0.a1
pyrus_communis	pycom12g02330 pycom14g02130
rosa_chinensis	RchiOBHm_Chr3g0473171 RchiOBHm_Chr6g0270521
rosa_laevigata	RLG00000024023
rosa_multiflora	Rmu_sc0004171.1_g000005 Rmu_sc0004477.1_g000002 Rmu_sc0039741.1_g000002 Rmu_sc0040292.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408250 Rroxscaffold_7G00197770 Rroxscaffold_7G00197850
rosa_rugosa	Rorug03G0132000 Rorug06G0055200
rosa_samantha	Rh3BG210000 Rh3CG207100 Rh3DG207200 Rh6AG174400 Rh6CG173600
rosa_wichuraiana	Rw0G008110 Rw0G019030 Rw6G014830 Rw6G014860 Rw7G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	94
AccII	CGCG	2 cut(s)	80, 153
AciI	CCGC	8 cut(s)	20, 23, 80, 83, 121, 151, 153, 387
AclWI	GGATC	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	12
AgeI	ACCGGT	1 cut(s)	43
AjiI	CACGTC	1 cut(s)	268
AluBI	AGCT	4 cut(s)	69, 103, 136, 392
AluI	AGCT	4 cut(s)	69, 103, 136, 392
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	3 cut(s)	60, 122, 147
ApeKI	GCWGC	4 cut(s)	26, 100, 112, 156
ApoI	RAATTY	1 cut(s)	12
AsiGI	ACCGGT	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	41, 148
AvaII	GGWCC	1 cut(s)	41
BbvI	GCAGC	4 cut(s)	38, 112, 124, 143
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	3 cut(s)	47, 113, 178
BfaI	CTAG	1 cut(s)	107
BfoI	RGCGCY	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	41
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	41, 148
BmsI	GCATC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bse118I	RCCGGY	2 cut(s)	43, 117
BseDI	CCNNGG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	303, 319
BseXI	GCAGC	4 cut(s)	38, 112, 124, 143
Bsh1236I	CGCG	2 cut(s)	80, 153
BshFI	GGCC	3 cut(s)	62, 124, 149
BshTI	ACCGGT	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	44, 118
BsnI	GGCC	3 cut(s)	62, 124, 149
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	8 cut(s)	20, 23, 80, 83, 121, 151, 153, 387
BspANI	GGCC	3 cut(s)	62, 124, 149
BspCNI	CTCAG	2 cut(s)	304, 318
BspFNI	CGCG	2 cut(s)	80, 153
BspHI	TCATGA	1 cut(s)	369
BspPI	GGATC	1 cut(s)	242
BsrFI	RCCGGY	2 cut(s)	43, 117
BssAI	RCCGGY	2 cut(s)	43, 117
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	247
BssNAI	GTATAC	1 cut(s)	95
Bst1107I	GTATAC	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	348, 383
BstC8I	GCNNGC	2 cut(s)	119, 151
BstDEI	CTNAG	2 cut(s)	305, 312
BstDSI	CCRYGG	1 cut(s)	151
BstFNI	CGCG	2 cut(s)	80, 153
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 109, 118, 121, 162
BstUI	CGCG	2 cut(s)	80, 153
BstV1I	GCAGC	4 cut(s)	38, 112, 124, 143
BstZ17I	GTATAC	1 cut(s)	95
BsuRI	GGCC	3 cut(s)	62, 124, 149
BtgI	CCRYGG	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	2 cut(s)	119, 151
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	1 cut(s)	117
Cfr10I	RCCGGY	2 cut(s)	43, 117
Cfr13I	GGNCC	2 cut(s)	41, 148
Cfr42I	CCGCGG	1 cut(s)	154
CpoI	CGGWCCG	1 cut(s)	41
CseI	GACGC	1 cut(s)	86
CspAI	ACCGGT	1 cut(s)	43
CspI	CGGWCCG	1 cut(s)	41
CviAII	CATG	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	305, 312
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	41
FaeI	CATG	1 cut(s)	373
FaiI	YATR	6 cut(s)	95, 127, 272, 293, 371, 406
FatI	CATG	1 cut(s)	369
FauI	CCCGC	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	94
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	3 cut(s)	62, 124, 149
HapII	CCGG	2 cut(s)	44, 118
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	3 cut(s)	88, 141, 362
HpaII	CCGG	2 cut(s)	44, 118
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	5 cut(s)	41, 140, 252, 261, 313
Hpy188III	TCNNGA	1 cut(s)	370
Hpy8I	GTNNAC	1 cut(s)	95
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	3 cut(s)	229, 247, 394
HpyCH4III	ACNGT	2 cut(s)	348, 383
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	159, 265
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 109, 118, 121, 162
HpyF3I	CTNAG	2 cut(s)	305, 312
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	373
HspAI	GCGC	1 cut(s)	115
KroI	GCCGGC	1 cut(s)	117
KroNI	GCCGGC	1 cut(s)	119
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	2 cut(s)	108, 389
LpnPI	CCDG	5 cut(s)	2, 44, 57, 131, 292
Lsp1109I	GCAGC	4 cut(s)	38, 112, 124, 143
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	267
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	1 cut(s)	292
MluCI	AATT	3 cut(s)	12, 181, 212
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	3 cut(s)	27, 45, 214
MreI	CGCCGGCG	1 cut(s)	117
MroNI	GCCGGC	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	2 cut(s)	44, 118
MvnI	CGCG	2 cut(s)	80, 153
MwoI	GCNNNNNNNGC	5 cut(s)	26, 109, 118, 121, 162
NaeI	GCCGGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	247
NgoMIV	GCCGGC	1 cut(s)	117
NlaIII	CATG	1 cut(s)	373
NmeAIII	GCCGAG	1 cut(s)	55
PagI	TCATGA	1 cut(s)	369
PdiI	GCCGGC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	88, 362
PinAI	ACCGGT	1 cut(s)	43
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PspPI	GGNCC	2 cut(s)	41, 148
Rsr2I	CGGWCCG	1 cut(s)	41
RsrII	CGGWCCG	1 cut(s)	41
SacII	CCGCGG	1 cut(s)	154
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	2 cut(s)	41, 148
SchI	GAGTC	1 cut(s)	150
SetI	ASST	9 cut(s)	71, 105, 138, 232, 240, 270, 311, 394, 405
SfaNI	GCATC	1 cut(s)	252
Sfr303I	CCGCGG	1 cut(s)	154
SgrAI	CRCCGGYG	1 cut(s)	117
SgrBI	CCGCGG	1 cut(s)	154
SinI	GGWCC	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	12, 181, 212
SsiI	CCGC	8 cut(s)	20, 23, 80, 83, 121, 151, 153, 387
SspMI	CTAG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	348, 383
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	207
TasI	AATT	3 cut(s)	12, 181, 212
TauI	GCSGC	6 cut(s)	23, 26, 83, 86, 124, 156
TfiI	GAWTC	2 cut(s)	88, 362
TscAI	CASTG	1 cut(s)	353
TseI	GCWGC	4 cut(s)	26, 100, 112, 156
TspDTI	ATGAA	2 cut(s)	313, 358
TspRI	CASTG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	94
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.