Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039741.1

Orthogroup ID

OG0004631

Physical Location & Seq

Genomic Coordinates Forward (+)

1196 .. 1848

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039741.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atggaatcgcctgcacatgttaatcttactgcccttgattctttgagctctttatacgctttggctggaatttgcgtagggcggtgcgtgttgatggcttcgcagattctggctgcggcggcggggaggacggcagcggcggcgaggcggcaagcggtgagcttgacggatgcggcggcttctagaatacggcagctgctagagcagcgccagcggtcgtatctgaagctcggggttaaggcgcgtggctgcaacggcttgtcgtacactctcaattacgcagatgataagggaaagttcgatgagttggttgaagataaaggcgtgaagatattgattgatccaaaggctctgatgcatgttattggaaccaagatggattttgtggatgacaaactcaggttagcctcctctcctcagttcatttggggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

144

Amino Acids

15.55

Weight (kDa)

9.27

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16710 AT2G16710 AT2G16710
fragaria_vesca	FvH4_6g18590
malus_domestica	MD12G1035500.v1.1 MD14G1022300.v1.1
prunus_persica	Prupe.7G111000_v2.0.a1
pyrus_communis	pycom12g02330 pycom14g02130
rosa_chinensis	RchiOBHm_Chr3g0473171 RchiOBHm_Chr6g0270521
rosa_laevigata	RLG00000024023
rosa_multiflora	Rmu_sc0004171.1_g000005 Rmu_sc0004477.1_g000002 Rmu_sc0039741.1_g000002 Rmu_sc0040292.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408250 Rroxscaffold_7G00197770 Rroxscaffold_7G00197850
rosa_rugosa	Rorug03G0132000 Rorug06G0055200
rosa_samantha	Rh3BG210000 Rh3CG207100 Rh3DG207200 Rh6AG174400 Rh6CG173600
rosa_wichuraiana	Rw0G008110 Rw0G019030 Rw6G014830 Rw6G014860 Rw7G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	244
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	314
AluBI	AGCT	4 cut(s)	48, 162, 196, 229
AluI	AGCT	4 cut(s)	48, 162, 196, 229
Alw21I	GWGCWC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	335
AlwNI	CAGNNNCTG	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	230
ApeKI	GCWGC	6 cut(s)	113, 134, 193, 196, 205, 249
ApoI	RAATTY	1 cut(s)	69
AspLEI	GCGC	2 cut(s)	210, 244
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	6 cut(s)	100, 146, 183, 205, 217, 236
BccI	CCATC	2 cut(s)	88, 370
BceAI	ACGGC	3 cut(s)	147, 206, 271
BfaI	CTAG	2 cut(s)	183, 200
BfoI	RGCGCY	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	370
BmsI	GCATC	2 cut(s)	160, 345
BseGI	GGATG	2 cut(s)	175, 394
BseMII	CTCAG	2 cut(s)	412, 431
BseRI	GAGGAG	2 cut(s)	400, 405
BseXI	GCAGC	6 cut(s)	100, 146, 183, 205, 217, 236
Bsh1236I	CGCG	1 cut(s)	244
Bsh1285I	CGRYCG	1 cut(s)	218
BsiEI	CGRYCG	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	340
BspCNI	CTCAG	2 cut(s)	411, 430
BspFNI	CGCG	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	335
BssMI	GATC	1 cut(s)	340
BstC8I	GCNNGC	3 cut(s)	12, 153, 212
BstDEI	CTNAG	2 cut(s)	398, 417
BstF5I	GGATG	2 cut(s)	175, 394
BstFNI	CGCG	1 cut(s)	244
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	210, 244
BstKTI	GATC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	340
BstMCI	CGRYCG	1 cut(s)	218
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 140, 202, 205, 211, 255
BstNSI	RCATGY	2 cut(s)	20, 362
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	6 cut(s)	100, 146, 183, 205, 217, 236
BtsCI	GGATG	2 cut(s)	175, 394
Cac8I	GCNNGC	3 cut(s)	12, 153, 212
CaiI	CAGNNNCTG	1 cut(s)	109
CfoI	GCGC	2 cut(s)	210, 244
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	17, 359
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	398, 417
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Ecl136II	GAGCTC	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	50
FaeI	CATG	2 cut(s)	20, 362
FaiI	YATR	3 cut(s)	18, 55, 360
FatI	CATG	2 cut(s)	16, 358
FauI	CCCGC	1 cut(s)	115
FokI	GGATG	2 cut(s)	182, 401
FriOI	GRGCYC	1 cut(s)	50
FspBI	CTAG	2 cut(s)	183, 200
GlaI	GCGC	2 cut(s)	209, 243
HaeII	RGCGCY	1 cut(s)	211
HhaI	GCGC	2 cut(s)	210, 244
Hin1II	CATG	2 cut(s)	20, 362
Hin6I	GCGC	2 cut(s)	208, 242
HinP1I	GCGC	2 cut(s)	208, 242
HinfI	GANTC	3 cut(s)	5, 38, 106
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	2 cut(s)	225, 354
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	14, 252, 358
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 140, 202, 205, 211, 255
HpyF3I	CTNAG	2 cut(s)	398, 417
Hsp92II	CATG	2 cut(s)	20, 362
HspAI	GCGC	2 cut(s)	208, 242
Kzo9I	GATC	1 cut(s)	340
LpnPI	CCDG	5 cut(s)	24, 51, 95, 224, 385
Lsp1109I	GCAGC	6 cut(s)	100, 146, 183, 205, 217, 236
LweI	GCATC	2 cut(s)	160, 345
MaeI	CTAG	2 cut(s)	183, 200
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	2 cut(s)	326, 340
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	2 cut(s)	69, 274
MnlI	CCTC	5 cut(s)	120, 138, 418, 421, 426
Mph1103I	ATGCAT	1 cut(s)	360
MseI	TTAA	2 cut(s)	21, 237
MspA1I	CMGCKG	3 cut(s)	137, 196, 214
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	6 cut(s)	119, 140, 202, 205, 211, 255
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	2 cut(s)	20, 362
NlaIV	GGNNCC	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	360
NspI	RCATGY	2 cut(s)	20, 362
PciI	ACATGT	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	5, 38, 106
PscI	ACATGT	1 cut(s)	16
Psp124BI	GAGCTC	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	370
PstNI	CAGNNNCTG	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	21, 237
Sau3AI	GATC	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	5 cut(s)	50, 164, 198, 231, 404
SfaNI	GCATC	2 cut(s)	160, 345
Sse9I	AATT	2 cut(s)	69, 274
SspMI	CTAG	2 cut(s)	183, 200
SstI	GAGCTC	1 cut(s)	50
TaqI	TCGA	1 cut(s)	300
TasI	AATT	2 cut(s)	69, 274
TauI	GCSGC	7 cut(s)	119, 122, 140, 143, 151, 176, 179
TfiI	GAWTC	3 cut(s)	5, 38, 106
Tru1I	TTAA	2 cut(s)	21, 237
Tru9I	TTAA	2 cut(s)	21, 237
TseI	GCWGC	6 cut(s)	113, 134, 193, 196, 205, 249
TspDTI	ATGAA	1 cut(s)	412
TspGWI	ACGGA	1 cut(s)	182
XapI	RAATTY	1 cut(s)	69
XbaI	TCTAGA	1 cut(s)	182
XceI	RCATGY	2 cut(s)	20, 362
XspI	CTAG	2 cut(s)	183, 200
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.