Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004631

Physical Location & Seq

Genomic Coordinates Forward (+)

13819464 .. 13821628

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G111000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTTCGCAGTTTCTGGCGGCGGCAGCCGAGAGGATCGGACCGGCAGCGAGGCGTCAAGCCGTCAGCTTAACTGACGCGGCGGCGAGTCGTATACGGCAGCTTCTGGAGCAGCGCCGGCGGCCCTATCTCAAGCTCGGCGTCAAGGCTCGTGGCTGCAACGGCTTGTCGTACACTCTCAATTACGCAGATGATAAAGGGAAGTTCGACGAGTTGGTTGAGGACAAGGGTGTGAAGATATTGATCGATCCAAAGGCGCTCATGCACGTTATAGGAACCAAAATGGATTTTGTAGATGACAAACTCAGGTCTGAGTTTGTATTTATCAATCCCAACTCTAAAGGACAGTGTGGTTGTGGAGAATCTTTCATGACAACAGGTGTTAGTGGAGCTACTAAGAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

136

Amino Acids

14.74

Weight (kDa)

9.51

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16710 AT2G16710 AT2G16710
fragaria_vesca	FvH4_6g18590
malus_domestica	MD12G1035500.v1.1 MD14G1022300.v1.1
prunus_persica	Prupe.7G111000_v2.0.a1
pyrus_communis	pycom12g02330 pycom14g02130
rosa_chinensis	RchiOBHm_Chr3g0473171 RchiOBHm_Chr6g0270521
rosa_laevigata	RLG00000024023
rosa_multiflora	Rmu_sc0004171.1_g000005 Rmu_sc0004477.1_g000002 Rmu_sc0039741.1_g000002 Rmu_sc0040292.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408250 Rroxscaffold_7G00197770 Rroxscaffold_7G00197850
rosa_rugosa	Rorug03G0132000 Rorug06G0055200
rosa_samantha	Rh3BG210000 Rh3CG207100 Rh3DG207200 Rh6AG174400 Rh6CG173600
rosa_wichuraiana	Rw0G008110 Rw0G019030 Rw6G014830 Rw6G014860 Rw7G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	94
AccII	CGCG	1 cut(s)	80
AciI	CCGC	5 cut(s)	20, 23, 80, 83, 121
AclWI	GGATC	2 cut(s)	44, 242
AcyI	GRCGYC	2 cut(s)	55, 141
AfaI	GTAC	1 cut(s)	173
AluBI	AGCT	4 cut(s)	69, 103, 136, 392
AluI	AGCT	4 cut(s)	69, 103, 136, 392
AlwI	GGATC	2 cut(s)	44, 242
AlwNI	CAGNNNCTG	2 cut(s)	16, 106
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	5 cut(s)	26, 47, 100, 112, 156
AspLEI	GCGC	2 cut(s)	117, 259
AspS9I	GGNCC	2 cut(s)	41, 123
AvaII	GGWCC	1 cut(s)	41
BauI	CACGAG	1 cut(s)	150
BbvI	GCAGC	5 cut(s)	38, 59, 112, 124, 143
BceAI	ACGGC	3 cut(s)	47, 113, 178
BfoI	RGCGCY	2 cut(s)	118, 260
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	41, 123
BmiI	GGNNCC	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	116
Bsa29I	ATCGAT	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	242
BsaHI	GRCGYC	2 cut(s)	55, 141
Bse118I	RCCGGY	2 cut(s)	43, 117
Bse8I	GATNNNNATC	1 cut(s)	242
BseCI	ATCGAT	1 cut(s)	246
BseJI	GATNNNNATC	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	303, 319
BseXI	GCAGC	5 cut(s)	38, 59, 112, 124, 143
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	124
BshVI	ATCGAT	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	44, 118
BsnI	GGCC	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	36, 243, 247
BspACI	CCGC	5 cut(s)	20, 23, 80, 83, 121
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	2 cut(s)	304, 318
BspDI	ATCGAT	1 cut(s)	246
BspFNI	CGCG	1 cut(s)	80
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	44, 242
BsrFI	RCCGGY	2 cut(s)	43, 117
BssAI	RCCGGY	2 cut(s)	43, 117
BssMI	GATC	3 cut(s)	36, 243, 247
BssNAI	GTATAC	1 cut(s)	95
BssNI	GRCGYC	2 cut(s)	55, 141
BssSI	CACGAG	1 cut(s)	150
Bst1107I	GTATAC	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	348
BstACI	GRCGYC	2 cut(s)	55, 141
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	305, 312, 396
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	2 cut(s)	118, 260
BstHHI	GCGC	2 cut(s)	117, 259
BstKTI	GATC	3 cut(s)	39, 246, 250
BstMBI	GATC	3 cut(s)	36, 243, 247
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 109, 118, 121, 162
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	5 cut(s)	38, 59, 112, 124, 143
BstZ17I	GTATAC	1 cut(s)	95
Bsu15I	ATCGAT	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	124
BsuTUI	ATCGAT	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	119
CaiI	CAGNNNCTG	2 cut(s)	16, 106
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	2 cut(s)	117, 259
Cfr10I	RCCGGY	2 cut(s)	43, 117
Cfr13I	GGNCC	2 cut(s)	41, 123
ClaI	ATCGAT	1 cut(s)	246
CpoI	CGGWCCG	1 cut(s)	41
CseI	GACGC	3 cut(s)	44, 86, 130
Csp6I	GTAC	1 cut(s)	172
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CspI	CGGWCCG	1 cut(s)	41
CviAII	CATG	2 cut(s)	262, 370
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	3 cut(s)	305, 312, 396
DpnI	GATC	3 cut(s)	38, 245, 249
DpnII	GATC	3 cut(s)	36, 243, 247
Eco47I	GGWCC	1 cut(s)	41
FaeI	CATG	2 cut(s)	265, 373
FaiI	YATR	4 cut(s)	95, 263, 272, 371
FatI	CATG	2 cut(s)	261, 369
FblI	GTMKAC	1 cut(s)	94
GlaI	GCGC	2 cut(s)	116, 258
GsuI	CTGGAG	1 cut(s)	128
HaeII	RGCGCY	2 cut(s)	118, 260
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	2 cut(s)	44, 118
HgaI	GACGC	3 cut(s)	44, 86, 130
HhaI	GCGC	2 cut(s)	117, 259
Hin1I	GRCGYC	2 cut(s)	55, 141
Hin1II	CATG	2 cut(s)	265, 373
Hin6I	GCGC	2 cut(s)	115, 257
HinP1I	GCGC	2 cut(s)	115, 257
HinfI	GANTC	2 cut(s)	88, 362
HpaII	CCGG	2 cut(s)	44, 118
Hpy166II	GTNNAC	2 cut(s)	95, 174
Hpy188I	TCNGA	2 cut(s)	41, 313
Hpy188III	TCNNGA	2 cut(s)	107, 370
Hpy8I	GTNNAC	2 cut(s)	95, 174
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	159, 265
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 109, 118, 121, 162
HpyF3I	CTNAG	3 cut(s)	305, 312, 396
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	2 cut(s)	55, 141
Hsp92II	CATG	2 cut(s)	265, 373
HspAI	GCGC	2 cut(s)	115, 257
KroI	GCCGGC	1 cut(s)	117
KroNI	GCCGGC	1 cut(s)	119
Kzo9I	GATC	3 cut(s)	36, 243, 247
LmnI	GCTCC	2 cut(s)	109, 389
LpnPI	CCDG	6 cut(s)	2, 57, 92, 131, 292, 363
Lsp1109I	GCAGC	5 cut(s)	38, 59, 112, 124, 143
MaeII	ACGT	1 cut(s)	267
MalI	GATC	3 cut(s)	38, 245, 249
MboI	GATC	3 cut(s)	36, 243, 247
MboII	GAAGA	1 cut(s)	247
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	27, 45, 214
MreI	CGCCGGCG	1 cut(s)	117
MroNI	GCCGGC	1 cut(s)	117
MseI	TTAA	2 cut(s)	71, 406
MspI	CCGG	2 cut(s)	44, 118
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	5 cut(s)	26, 109, 118, 121, 162
NaeI	GCCGGC	1 cut(s)	119
NdeII	GATC	3 cut(s)	36, 243, 247
NgoMIV	GCCGGC	1 cut(s)	117
NlaIII	CATG	2 cut(s)	265, 373
NlaIV	GGNNCC	1 cut(s)	277
NmeAIII	GCCGAG	2 cut(s)	55, 117
PagI	TCATGA	1 cut(s)	369
PdiI	GCCGGC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	362
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	41, 123
PstNI	CAGNNNCTG	2 cut(s)	16, 106
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
Rsr2I	CGGWCCG	1 cut(s)	41
RsrII	CGGWCCG	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	71, 406
Sau3AI	GATC	3 cut(s)	36, 243, 247
Sau96I	GGNCC	2 cut(s)	41, 123
SchI	GAGTC	1 cut(s)	97
SetI	ASST	8 cut(s)	71, 105, 138, 270, 311, 382, 394, 405
SgrAI	CRCCGGYG	1 cut(s)	117
SinI	GGWCC	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	5 cut(s)	20, 23, 80, 83, 121
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	207, 246
TasI	AATT	1 cut(s)	181
TauI	GCSGC	5 cut(s)	23, 26, 83, 86, 124
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	2 cut(s)	71, 406
Tru9I	TTAA	2 cut(s)	71, 406
TscAI	CASTG	1 cut(s)	353
TseI	GCWGC	5 cut(s)	26, 47, 100, 112, 156
TspDTI	ATGAA	1 cut(s)	358
TspRI	CASTG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.