Rh3DG207200

Iron-sulfur assembly protein IscA-like 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004631
Physical Location & Seq
Forward (+)
18931913 .. 18934497
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG207200.1

Sequence Viewer

Length: 414 bp
ATGGCTTCGCAGATTCTGGCTGCGGCGGCGGGGAGGACGGCAGCGGCGGCGAGGCGGCAAGCGGTGAGCTTGACGGATGCGGCGGCTTCTAGAATACGGCAGCTGCTAGAGCAGCGCCAGCGGTCGTATCTGAAGCTCGGGGTTAAGGCGCGTGGCTGCAACGGCTTGTCGTACACTCTCAATTACGCAGATGATAAGGGAAAGTTCGATGAGTTGGTTGAAGATAAAGGCGTGAAGATATTGATTGATCCAAAGGCTCTGATGCATGTTATTGGAACCAAGATGGATTTTGTGGATGACAAACTCAGGTCTGAGTTTATATTTATCAATCCCAACTCAAAAGGACAATGCGGCTGTGGTGAATCTTTTATGACAACAGGTAGTAATGGAGCTACTAAGCAAAGCAGCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fe-S_biosyn

Protein Analysis

137

Amino Acids

14.77

Weight (kDa)

9.4

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fe-S_biosyn PF01521 22 - 121 5.5e-19 Iron-sulphur cluster biosynthesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 151
AclWI GGATC 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 1 cut(s) 173
AgsI TTSAA 1 cut(s) 221
AluBI AGCT 4 cut(s) 69, 103, 136, 392
AluI AGCT 4 cut(s) 69, 103, 136, 392
AlwI GGATC 1 cut(s) 242
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 137
ApeKI GCWGC 7 cut(s) 20, 41, 100, 103, 112, 156, 405
AspLEI GCGC 2 cut(s) 117, 151
AsuHPI GGTGA 2 cut(s) 76, 371
AvaI CYCGRG 1 cut(s) 137
BbvI GCAGC 6 cut(s) 7, 53, 90, 112, 124, 143
BccI CCATC 1 cut(s) 277
BceAI ACGGC 3 cut(s) 54, 113, 178
BfaI CTAG 2 cut(s) 90, 107
BfoI RGCGCY 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 277
BmsI GCATC 2 cut(s) 67, 252
BseGI GGATG 2 cut(s) 82, 301
BseMII CTCAG 2 cut(s) 303, 319
BseXI GCAGC 6 cut(s) 7, 53, 90, 112, 124, 143
Bsh1236I CGCG 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 137
Bsp143I GATC 1 cut(s) 247
BspCNI CTCAG 2 cut(s) 304, 318
BspFNI CGCG 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 277
BspPI GGATC 1 cut(s) 242
BssMI GATC 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 60, 119
BstDEI CTNAG 3 cut(s) 305, 312, 396
BstF5I GGATG 2 cut(s) 82, 301
BstFNI CGCG 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 2 cut(s) 117, 151
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMCI CGRYCG 1 cut(s) 125
BstMWI GCNNNNNNNGC 6 cut(s) 26, 47, 109, 112, 118, 162
BstNSI RCATGY 1 cut(s) 269
BstUI CGCG 1 cut(s) 151
BstV1I GCAGC 6 cut(s) 7, 53, 90, 112, 124, 143
BtsCI GGATG 2 cut(s) 82, 301
Cac8I GCNNGC 2 cut(s) 60, 119
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 2 cut(s) 117, 151
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 266
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 3 cut(s) 305, 312, 396
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 137
EcoT22I ATGCAT 1 cut(s) 267
FaeI CATG 1 cut(s) 269
FaiI YATR 3 cut(s) 267, 320, 371
FatI CATG 1 cut(s) 265
FauI CCCGC 1 cut(s) 22
FokI GGATG 2 cut(s) 89, 308
FspBI CTAG 2 cut(s) 90, 107
GlaI GCGC 2 cut(s) 116, 150
HaeII RGCGCY 1 cut(s) 118
HhaI GCGC 2 cut(s) 117, 151
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 2 cut(s) 115, 149
HinP1I GCGC 2 cut(s) 115, 149
HinfI GANTC 2 cut(s) 13, 362
HphI GGTGA 2 cut(s) 76, 371
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 3 cut(s) 132, 261, 313
Hpy188III TCNNGA 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 159, 265
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 47, 109, 112, 118, 162
HpyF3I CTNAG 3 cut(s) 305, 312, 396
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 2 cut(s) 115, 149
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 389
LpnPI CCDG 4 cut(s) 2, 131, 292, 363
Lsp1109I GCAGC 6 cut(s) 7, 53, 90, 112, 124, 143
LweI GCATC 2 cut(s) 67, 252
MaeI CTAG 2 cut(s) 90, 107
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 2 cut(s) 233, 247
MluCI AATT 1 cut(s) 181
MnlI CCTC 2 cut(s) 27, 45
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 1 cut(s) 144
MspA1I CMGCKG 3 cut(s) 44, 103, 121
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 6 cut(s) 26, 47, 109, 112, 118, 162
NdeII GATC 1 cut(s) 247
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 277
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 1 cut(s) 269
PfeI GAWTC 2 cut(s) 13, 362
PspN4I GGNNCC 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 103
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 1 cut(s) 247
SetI ASST 6 cut(s) 71, 105, 138, 311, 382, 394
SfaNI GCATC 2 cut(s) 67, 252
Sse9I AATT 1 cut(s) 181
SspMI CTAG 2 cut(s) 90, 107
TaqI TCGA 1 cut(s) 207
TasI AATT 1 cut(s) 181
TauI GCSGC 8 cut(s) 26, 29, 47, 50, 58, 83, 86, 354
TfiI GAWTC 2 cut(s) 13, 362
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 7 cut(s) 20, 41, 100, 103, 112, 156, 405
TspGWI ACGGA 1 cut(s) 89
XbaI TCTAGA 1 cut(s) 89
XceI RCATGY 1 cut(s) 269
XspI CTAG 2 cut(s) 90, 107
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.