Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004631

Physical Location & Seq

Genomic Coordinates Reverse (-)

30950515 .. 30952194

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024023

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTTCGCAGATTCTGGCTGCAGCGGCGGGGAGGACGGCAGCGGCGGCGAGGCGGCAAGCGGTGAGCTTGACGGATTCGGCGGCTTCTAGAATACGGCAGCTGCTGGAGCAGCGCCAGCGGTCGTATCTGAAGCTCGGGGTTAAGGCGCGTGGCTGCAACGGCTTGTCGTACACTCTCAATTACGCAGATGATAAGGGAAAGTTCGATGAGTTGGTTGAAGATAAAGGCGTGAAGATATTGATCGATCCAAAGGCTCTGATGCATGTTATTGGAACCAAGATGGATTTTGTGGATGACAAACTCAGGTCTGAGTTTATATTTATCAATCCCAACTCAAAAGGACAATGCGGCTGTGGTGAATCTTTTATGACAACAGGTAGTACTGGAGCTACTAAGCAAAGCAGCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

138

Amino Acids

14.78

Weight (kDa)

9.4

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-S_biosyn	PF01521	22 - 121	7e-19	Iron-sulphur cluster biosynthesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16710 AT2G16710 AT2G16710
fragaria_vesca	FvH4_6g18590
malus_domestica	MD12G1035500.v1.1 MD14G1022300.v1.1
prunus_persica	Prupe.7G111000_v2.0.a1
pyrus_communis	pycom12g02330 pycom14g02130
rosa_chinensis	RchiOBHm_Chr3g0473171 RchiOBHm_Chr6g0270521
rosa_laevigata	RLG00000024023
rosa_multiflora	Rmu_sc0004171.1_g000005 Rmu_sc0004477.1_g000002 Rmu_sc0039741.1_g000002 Rmu_sc0040292.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408250 Rroxscaffold_7G00197770 Rroxscaffold_7G00197850
rosa_rugosa	Rorug03G0132000 Rorug06G0055200
rosa_samantha	Rh3BG210000 Rh3CG207100 Rh3DG207200 Rh6AG174400 Rh6CG173600
rosa_wichuraiana	Rw0G008110 Rw0G019030 Rw6G014830 Rw6G014860 Rw7G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	151
AciI	CCGC	9 cut(s)	26, 29, 44, 47, 55, 62, 83, 121, 351
AclWI	GGATC	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	2 cut(s)	173, 385
AgsI	TTSAA	1 cut(s)	221
AluBI	AGCT	4 cut(s)	69, 103, 136, 392
AluI	AGCT	4 cut(s)	69, 103, 136, 392
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	2 cut(s)	16, 106
Ama87I	CYCGRG	1 cut(s)	137
ApeKI	GCWGC	8 cut(s)	20, 23, 41, 100, 103, 112, 156, 405
AspLEI	GCGC	2 cut(s)	117, 151
AsuHPI	GGTGA	2 cut(s)	76, 371
AvaI	CYCGRG	1 cut(s)	137
BbvI	GCAGC	7 cut(s)	7, 35, 53, 90, 112, 124, 143
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	3 cut(s)	54, 113, 178
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	118
BmcAI	AGTACT	1 cut(s)	385
BmeT110I	CYCGRG	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	277
BmsI	GCATC	1 cut(s)	252
BpmI	CTGGAG	2 cut(s)	128, 408
Bsa29I	ATCGAT	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	391
Bse8I	GATNNNNATC	1 cut(s)	242
BseCI	ATCGAT	1 cut(s)	246
BseGI	GGATG	1 cut(s)	301
BseJI	GATNNNNATC	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	303, 319
BseNI	ACTGG	1 cut(s)	391
BseXI	GCAGC	7 cut(s)	7, 35, 53, 90, 112, 124, 143
Bsh1236I	CGCG	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	246
BsiEI	CGRYCG	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	243, 247
BspACI	CCGC	9 cut(s)	26, 29, 44, 47, 55, 62, 83, 121, 351
BspCNI	CTCAG	2 cut(s)	304, 318
BspDI	ATCGAT	1 cut(s)	246
BspFNI	CGCG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	25
BspPI	GGATC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	391
BssMI	GATC	2 cut(s)	243, 247
BstC8I	GCNNGC	2 cut(s)	60, 119
BstDEI	CTNAG	3 cut(s)	305, 312, 396
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	1 cut(s)	151
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	117, 151
BstKTI	GATC	2 cut(s)	246, 250
BstMBI	GATC	2 cut(s)	243, 247
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 47, 109, 112, 118, 162
BstNSI	RCATGY	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	21
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	7 cut(s)	7, 35, 53, 90, 112, 124, 143
Bsu15I	ATCGAT	1 cut(s)	246
BsuTUI	ATCGAT	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	60, 119
CaiI	CAGNNNCTG	2 cut(s)	16, 106
CfoI	GCGC	2 cut(s)	117, 151
ClaI	ATCGAT	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	172, 384
CviAII	CATG	1 cut(s)	266
CviQI	GTAC	2 cut(s)	172, 384
DdeI	CTNAG	3 cut(s)	305, 312, 396
DpnI	GATC	2 cut(s)	245, 249
DpnII	GATC	2 cut(s)	243, 247
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	267
FaeI	CATG	1 cut(s)	269
FaiI	YATR	3 cut(s)	267, 320, 371
FatI	CATG	1 cut(s)	265
FauI	CCCGC	1 cut(s)	22
FokI	GGATG	1 cut(s)	308
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	2 cut(s)	116, 150
GsuI	CTGGAG	2 cut(s)	128, 408
HaeII	RGCGCY	1 cut(s)	118
HhaI	GCGC	2 cut(s)	117, 151
Hin1II	CATG	1 cut(s)	269
Hin6I	GCGC	2 cut(s)	115, 149
HinP1I	GCGC	2 cut(s)	115, 149
HinfI	GANTC	3 cut(s)	13, 77, 362
HphI	GGTGA	2 cut(s)	76, 371
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	3 cut(s)	132, 261, 313
Hpy188III	TCNNGA	1 cut(s)	90
Hpy8I	GTNNAC	1 cut(s)	174
HpyCH4V	TGCA	3 cut(s)	23, 159, 265
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 47, 109, 112, 118, 162
HpyF3I	CTNAG	3 cut(s)	305, 312, 396
Hsp92II	CATG	1 cut(s)	269
HspAI	GCGC	2 cut(s)	115, 149
Kzo9I	GATC	2 cut(s)	243, 247
LmnI	GCTCC	2 cut(s)	109, 389
LpnPI	CCDG	6 cut(s)	2, 92, 131, 292, 363, 372
Lsp1109I	GCAGC	7 cut(s)	7, 35, 53, 90, 112, 124, 143
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	1 cut(s)	90
MalI	GATC	2 cut(s)	245, 249
MboI	GATC	2 cut(s)	243, 247
MboII	GAAGA	2 cut(s)	233, 247
MluCI	AATT	1 cut(s)	181
MnlI	CCTC	2 cut(s)	27, 45
Mph1103I	ATGCAT	1 cut(s)	267
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	4 cut(s)	26, 44, 103, 121
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	6 cut(s)	26, 47, 109, 112, 118, 162
NdeII	GATC	2 cut(s)	243, 247
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	267
NspI	RCATGY	1 cut(s)	269
PfeI	GAWTC	3 cut(s)	13, 77, 362
PspN4I	GGNNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	25
PstNI	CAGNNNCTG	2 cut(s)	16, 106
PvuII	CAGCTG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	173, 385
RsaNI	GTAC	2 cut(s)	172, 384
SaqAI	TTAA	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	243, 247
ScaI	AGTACT	1 cut(s)	385
SetI	ASST	6 cut(s)	71, 105, 138, 311, 382, 394
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	21
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	9 cut(s)	26, 29, 44, 47, 55, 62, 83, 121, 351
SspMI	CTAG	1 cut(s)	90
TaqI	TCGA	2 cut(s)	207, 246
TasI	AATT	1 cut(s)	181
TatI	WGTACW	1 cut(s)	383
TauI	GCSGC	6 cut(s)	29, 47, 50, 58, 86, 354
TfiI	GAWTC	3 cut(s)	13, 77, 362
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	8 cut(s)	20, 23, 41, 100, 103, 112, 156, 405
TspGWI	ACGGA	1 cut(s)	89
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	1 cut(s)	269
XspI	CTAG	1 cut(s)	90
ZrmI	AGTACT	1 cut(s)	385
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.