Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Forward (+)

8167471 .. 8168668

Gene Structure 1198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCCTCTTCTCTCGACGTCTTTTGTCAAAAAAAAAAGCTATTGGTGGGTCATTTTACTATTAGCTATTGGTGGGTCATTTTACTTCACGCAGGAGCTGCAAGTAACTCTAATTTGAGTGATGATAAAAAGAAACGAAGGAAAAACCCTAAGCCTCGGCACTTAAGTTCGTATGGGAAGCGTAATAACACTCCAGTTCAACCCTCAGAAACTGAAACCAAGAGCCAAGGCAAAAGAGTTTGCTTCAACAACTCTGATGTAAGACAGATGAAGCAAAACACTTCTTCTAGAGAAAATCAGTTTGGCATAAAAGAAACTGTCTTGGAGAATTTCCCCAACGTCACTCCTCAGTTTATGTCAGACCAAATCAATGGCCATCAAGATAAACCTGAGAAGGCGAAGAAGAATCCGGAAAGCTATGGTTTAGGGCTTGAGCAATGTGTGAAGATCATAAGAAAGCTTGAGTGTTCAGGTTATGTTGAGAGCACTTTTAGACAAAAGTTTTTGACTTGGTTTAGCCTACGAGCTACGAGTCAGGAGAGAAATACTGTCACGACATTCATGAATGCTTTCAATGATGATTCAATGGCTCTGGCTGAGCAGCTCGTTGACACATTCTCTGATTGTATATGGAGCAAGGGTTCTGTGATTGGCGATCGCGATGGAGGTGGCAGTAGTGGTGTCTCATTGTGTTGTATTTTTTTTCTTCCCGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

239

Amino Acids

26.99

Weight (kDa)

9.07

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIN3_C	PF23380	144 - 213	1.2e-33	VIN3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	21
AccII	CGCG	1 cut(s)	660
AccIII	TCCGGA	1 cut(s)	409
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	18
AflII	CTTAAG	1 cut(s)	163
AgsI	TTSAA	4 cut(s)	200, 247, 574, 585
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AloI	GAACNNNNNNTCC	2 cut(s)	625, 657
AluBI	AGCT	7 cut(s)	40, 66, 98, 417, 460, 527, 604
AluI	AGCT	7 cut(s)	40, 66, 98, 417, 460, 527, 604
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	1 cut(s)	688
AlwNI	CAGNNNCTG	2 cut(s)	98, 212
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	2 cut(s)	3, 373
ApeKI	GCWGC	2 cut(s)	98, 601
ApoI	RAATTY	1 cut(s)	328
AsiSI	GCGATCGC	1 cut(s)	658
Asp700I	GAANNNNTTC	1 cut(s)	569
BalI	TGGCCA	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	488
BbvI	GCAGC	2 cut(s)	85, 613
BccI	CCATC	2 cut(s)	384, 656
BcoDI	GTCTC	1 cut(s)	688
BfaI	CTAG	1 cut(s)	288
BfrI	CTTAAG	1 cut(s)	163
BisI	GCNGC	2 cut(s)	99, 602
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	2 cut(s)	100, 603
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	2 cut(s)	452, 482
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	155, 226
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	625, 655
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	443
BseAI	TCCGGA	1 cut(s)	409
BseDI	CCNNGG	2 cut(s)	155, 226
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	4 cut(s)	219, 362, 381, 588
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	85, 613
Bsh1236I	CGCG	1 cut(s)	660
Bsh1285I	CGRYCG	1 cut(s)	658
BshFI	GGCC	2 cut(s)	5, 375
BsiEI	CGRYCG	1 cut(s)	658
BsiHKAI	GWGCWC	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	688
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	2 cut(s)	5, 375
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	447, 655
Bsp1720I	GCTNAGC	1 cut(s)	597
Bsp68I	TCGCGA	1 cut(s)	660
BspANI	GGCC	2 cut(s)	5, 375
BspCNI	CTCAG	4 cut(s)	218, 361, 382, 589
BspEI	TCCGGA	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	660
BspHI	TCATGA	1 cut(s)	561
BspTI	CTTAAG	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	155, 226
BssMI	GATC	2 cut(s)	447, 655
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	319, 550
Bst6I	CTCTTC	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	18
BstAFI	CTTAAG	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstDEI	CTNAG	5 cut(s)	150, 205, 348, 390, 597
BstFNI	CGCG	1 cut(s)	660
BstKTI	GATC	2 cut(s)	450, 658
BstMAI	GTCTC	1 cut(s)	688
BstMBI	GATC	2 cut(s)	447, 655
BstMCI	CGRYCG	1 cut(s)	658
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	2 cut(s)	85, 613
BstXI	CCANNNNNNTGG	1 cut(s)	371
BsuRI	GGCC	2 cut(s)	5, 375
BtgZI	GCGATG	1 cut(s)	675
BtuMI	TCGCGA	1 cut(s)	660
CaiI	CAGNNNCTG	2 cut(s)	98, 212
CciI	TCATGA	1 cut(s)	561
CviAII	CATG	1 cut(s)	562
DdeI	CTNAG	5 cut(s)	150, 205, 348, 390, 597
DpnI	GATC	2 cut(s)	449, 657
DpnII	GATC	2 cut(s)	447, 655
EaeI	YGGCCR	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	1 cut(s)	565
FaiI	YATR	9 cut(s)	174, 308, 356, 420, 452, 477, 563, 629, 631
FatI	CATG	1 cut(s)	561
Fnu4HI	GCNGC	2 cut(s)	99, 602
Fsp4HI	GCNGC	2 cut(s)	99, 602
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	2 cut(s)	99, 602
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	5, 375
HapII	CCGG	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	1 cut(s)	565
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	3 cut(s)	406, 532, 581
HpaII	CCGG	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	4 cut(s)	208, 256, 361, 622
Hpy188III	TCNNGA	9 cut(s)	14, 288, 380, 410, 536, 553, 562, 659, 710
Hpy8I	GTNNAC	1 cut(s)	610
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	132, 388
HpyCH4III	ACNGT	2 cut(s)	319, 550
HpyCH4IV	ACGT	2 cut(s)	18, 339
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	5 cut(s)	150, 205, 348, 390, 597
HpySE526I	ACGT	2 cut(s)	18, 339
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	565
Kpn2I	TCCGGA	1 cut(s)	409
Kzo9I	GATC	2 cut(s)	447, 655
LmnI	GCTCC	2 cut(s)	95, 633
LpnPI	CCDG	7 cut(s)	78, 207, 402, 423, 456, 521, 578
Lsp1109I	GCAGC	2 cut(s)	85, 613
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	2 cut(s)	18, 339
MaeIII	GTNAC	3 cut(s)	104, 340, 550
MalI	GATC	2 cut(s)	449, 657
MboI	GATC	2 cut(s)	447, 655
MboII	GAAGA	5 cut(s)	276, 412, 415, 457, 698
MhlI	GDGCHC	1 cut(s)	488
MlsI	TGGCCA	1 cut(s)	375
MluCI	AATT	2 cut(s)	112, 328
MluNI	TGGCCA	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	541
MnlI	CCTC	5 cut(s)	16, 165, 214, 357, 659
Mox20I	TGGCCA	1 cut(s)	375
MroI	TCCGGA	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	569
MscI	TGGCCA	1 cut(s)	375
MseI	TTAA	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	375
MspCI	CTTAAG	1 cut(s)	163
MspI	CCGG	1 cut(s)	410
Mva1269I	GAATGC	1 cut(s)	571
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	2 cut(s)	447, 655
NlaIII	CATG	1 cut(s)	565
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	2 cut(s)	340, 550
NruI	TCGCGA	1 cut(s)	660
PagI	TCATGA	1 cut(s)	561
PctI	GAATGC	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	569
PfeI	GAWTC	2 cut(s)	406, 581
PkrI	GCNGC	2 cut(s)	100, 603
Ple19I	CGATCG	1 cut(s)	658
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
PstNI	CAGNNNCTG	2 cut(s)	98, 212
PvuI	CGATCG	1 cut(s)	658
RgaI	GCGATCGC	1 cut(s)	658
RruI	TCGCGA	1 cut(s)	660
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	2 cut(s)	99, 602
Sau3AI	GATC	2 cut(s)	447, 655
SchI	GAGTC	1 cut(s)	541
SduI	GDGCHC	1 cut(s)	488
SfaAI	GCGATCGC	1 cut(s)	658
SgfI	GCGATCGC	1 cut(s)	658
SmlI	CTYRAG	3 cut(s)	163, 431, 461
SmoI	CTYRAG	3 cut(s)	163, 431, 461
Sse9I	AATT	2 cut(s)	112, 328
SspMI	CTAG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	319, 550
TaiI	ACGT	2 cut(s)	21, 342
TaqI	TCGA	1 cut(s)	15
TasI	AATT	2 cut(s)	112, 328
TfiI	GAWTC	2 cut(s)	406, 581
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TseFI	GTSAC	2 cut(s)	340, 550
TseI	GCWGC	2 cut(s)	98, 601
Tsp45I	GTSAC	2 cut(s)	340, 550
TspDTI	ATGAA	3 cut(s)	284, 550, 578
Vha464I	CTTAAG	1 cut(s)	163
XapI	RAATTY	1 cut(s)	328
XbaI	TCTAGA	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	569
XspI	CTAG	1 cut(s)	288
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.