Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Forward (+)

90935239 .. 90937050

Gene Structure 1812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCCCAATCTGAATGAAGAGCTAACCCCGCCTTCTGAGTCCTCCAGAGATGAAGATAATGGATGCAGTTTGCAGCAGGCTGTGGAGGCAGATAATGATGCTGCGTCTCATGATATGGTGAAGAATGACCTAGCAAGATCACGTGGTAGTGGTGATTCACAGACCTGGACTCGTGGGATTACTGGAGATGTCCCTGCTGTGATTCCCGGGCAGAAATTTGCAGGAAGAGGAAAAGGAAACACAAATGAAGAGACCCATGATTGTGACAGCACCCTGATAAATGAGCCACCATTGCAAAATGGTTCTTGTTGCTTGGACGAGAACTTTGAGCACTGTGTGAAAATAATCAGGTGGCTGGAATGCGAGGGTCACCTTACAGAGGAATTCAGATTGAAGTTGCTAACATGGTTCAGTTTGAGATCAACTGAGCAGGAACGTAGGGTGGTGAAACACCTTTCTTCAAACTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

157

Amino Acids

17.58

Weight (kDa)

4.78

Isoelectric Point (pI)

57.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIN3_C	PF23380	106 - 150	4.7e-23	VIN3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AcsI	RAATTY	2 cut(s)	215, 383
AcvI	CACGTG	1 cut(s)	143
AdeI	CACNNNGTG	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	394, 462
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	111, 245
Ama87I	CYCGRG	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	73, 101
ApoI	RAATTY	2 cut(s)	215, 383
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AsuC2I	CCSGG	2 cut(s)	207, 208
AsuHPI	GGTGA	4 cut(s)	130, 164, 362, 457
AvaI	CYCGRG	1 cut(s)	206
BauI	CACGAG	1 cut(s)	171
BbrPI	CACGTG	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	85, 88
BciT130I	CCWGG	1 cut(s)	166
BcnI	CCSGG	2 cut(s)	207, 208
BcoDI	GTCTC	2 cut(s)	111, 245
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	2 cut(s)	74, 102
BlsI	GCNGC	2 cut(s)	75, 103
Bme1390I	CCNGG	3 cut(s)	166, 207, 208
BmeT110I	CYCGRG	1 cut(s)	206
BmrFI	CCNGG	3 cut(s)	166, 207, 208
BmsI	GCATC	2 cut(s)	53, 88
BpmI	CTGGAG	2 cut(s)	28, 204
BpuMI	CCSGG	2 cut(s)	207, 208
BsaAI	YACGTR	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	27, 417
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	85, 88
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	2 cut(s)	111, 245
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	365
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	137, 419
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	28, 418
BspHI	TCATGA	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	137, 419
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	3 cut(s)	12, 220, 243
BstBAI	YACGTR	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	36, 426
BstEII	GGTNACC	1 cut(s)	368
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	140, 422
BstMAI	GTCTC	2 cut(s)	111, 245
BstMBI	GATC	2 cut(s)	137, 419
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 86, 292
BstNI	CCWGG	1 cut(s)	166
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	164, 205, 206
BstV1I	GCAGC	2 cut(s)	85, 88
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	109
Cfr9I	CCCGGG	1 cut(s)	206
CseI	GACGC	1 cut(s)	93
CviAII	CATG	3 cut(s)	110, 257, 405
CviJI	RGCY	4 cut(s)	22, 80, 286, 355
CviKI_1	RGCY	4 cut(s)	22, 80, 286, 355
DdeI	CTNAG	2 cut(s)	36, 426
DpnI	GATC	2 cut(s)	139, 421
DpnII	GATC	2 cut(s)	137, 419
DraIII	CACNNNGTG	1 cut(s)	337
Eam1104I	CTCTTC	3 cut(s)	12, 220, 243
EarI	CTCTTC	3 cut(s)	12, 220, 243
Eco31I	GGTCTC	1 cut(s)	245
Eco72I	CACGTG	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	206
Eco91I	GGTNACC	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	3 cut(s)	113, 260, 408
FaiI	YATR	5 cut(s)	111, 116, 258, 406, 468
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	109, 256, 404
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	74, 102
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	74, 102
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	2 cut(s)	74, 102
GsuI	CTGGAG	2 cut(s)	28, 204
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	113, 260, 408
HinfI	GANTC	4 cut(s)	38, 155, 169, 202
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	4 cut(s)	130, 164, 362, 457
Hpy188I	TCNGA	3 cut(s)	12, 37, 389
Hpy188III	TCNNGA	2 cut(s)	45, 110
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	2 cut(s)	142, 436
HpyCH4V	TGCA	4 cut(s)	66, 73, 221, 295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 86, 292
HpyF3I	CTNAG	2 cut(s)	36, 426
HpySE526I	ACGT	2 cut(s)	142, 436
Hsp92II	CATG	3 cut(s)	113, 260, 408
Kzo9I	GATC	2 cut(s)	137, 419
LguI	GCTCTTC	1 cut(s)	12
Lsp1109I	GCAGC	2 cut(s)	85, 88
LweI	GCATC	2 cut(s)	53, 88
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	2 cut(s)	142, 436
MaeIII	GTNAC	2 cut(s)	263, 368
MalI	GATC	2 cut(s)	139, 421
MboI	GATC	2 cut(s)	137, 419
MboII	GAAGA	6 cut(s)	29, 65, 133, 237, 260, 450
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	2 cut(s)	215, 383
MlyI	GAGTC	2 cut(s)	47, 163
MnlI	CCTC	5 cut(s)	52, 79, 221, 358, 373
MslI	CAYNNNNRTG	1 cut(s)	261
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	3 cut(s)	166, 207, 208
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	3 cut(s)	28, 86, 292
NciI	CCSGG	2 cut(s)	207, 208
NdeII	GATC	2 cut(s)	137, 419
NlaIII	CATG	3 cut(s)	113, 260, 408
NmuCI	GTSAC	2 cut(s)	263, 368
PagI	TCATGA	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	12
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	155, 202
PkrI	GCNGC	2 cut(s)	75, 103
PleI	GAGTC	2 cut(s)	46, 163
PmaCI	CACGTG	1 cut(s)	143
PmlI	CACGTG	1 cut(s)	143
PpsI	GAGTC	2 cut(s)	46, 163
Ppu21I	YACGTR	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	164
PspCI	CACGTG	1 cut(s)	143
PspEI	GGTNACC	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	12
SatI	GCNGC	2 cut(s)	74, 102
Sau3AI	GATC	2 cut(s)	137, 419
SchI	GAGTC	2 cut(s)	47, 163
ScrFI	CCNGG	3 cut(s)	166, 207, 208
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	8 cut(s)	24, 132, 145, 167, 353, 375, 439, 456
SfaNI	GCATC	2 cut(s)	53, 88
SmaI	CCCGGG	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	2 cut(s)	215, 383
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	3 cut(s)	164, 205, 206
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	2 cut(s)	145, 439
TasI	AATT	2 cut(s)	215, 383
TfiI	GAWTC	2 cut(s)	155, 202
TscAI	CASTG	1 cut(s)	338
TseFI	GTSAC	2 cut(s)	263, 368
TseI	GCWGC	2 cut(s)	73, 101
Tsp45I	GTSAC	2 cut(s)	263, 368
TspDTI	ATGAA	3 cut(s)	30, 66, 261
TspMI	CCCGGG	1 cut(s)	206
TspRI	CASTG	1 cut(s)	338
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	2 cut(s)	215, 383
XmaI	CCCGGG	1 cut(s)	206
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.