Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Forward (+)

1440719 .. 1441125

Gene Structure 407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG020600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTTGGCCAATGTTTCTAGTGCAGATCCAAGAAGAGAGGGTTCACTTCCAGCTGCCTGCATGTTTCTCTCGGAGGAAGTAACACCTTCATCTGTTGTGATTATAATGATCGGACTGTCTAATGCATCGTCTGATGACATCAAGGGCTACAAGCTCTGGTATTACAAGAGCAGAGAAGAATCACACACAAAAGAGCCTAATTGTACCTTTTCAAGATCTCAGAGAAGAATTTTGATCTCCAATTTGCAGCCTTGCACAGAGTATACATTTAGGATAATATCTGATACTGAGGCTGGTGATTTGGGTCACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

104

Amino Acids

11.61

Weight (kDa)

5.62

Isoelectric Point (pI)

74.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fn3_VIN3	PF23376	25 - 104	3e-27	VIN3-like, fibronectin type-III domain
fn3	PF00041	27 - 100	3.2e-06	Fibronectin type III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	228
AfaI	GTAC	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	213
AluBI	AGCT	2 cut(s)	53, 154
AluI	AGCT	2 cut(s)	53, 154
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	53, 247
ApoI	RAATTY	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	308
BalI	TGGCCA	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	40, 259
BfaI	CTAG	1 cut(s)	18
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	2 cut(s)	54, 248
BlsI	GCNGC	2 cut(s)	55, 249
BmsI	GCATC	1 cut(s)	134
BseMII	CTCAG	2 cut(s)	233, 279
BseXI	GCAGC	2 cut(s)	40, 259
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	25, 108, 215, 234
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	232, 280
BspPI	GGATC	1 cut(s)	20
BssMI	GATC	4 cut(s)	25, 108, 215, 234
BssNAI	GTATAC	1 cut(s)	264
Bst1107I	GTATAC	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	3 cut(s)	219, 288, 312
BstKTI	GATC	4 cut(s)	28, 111, 218, 237
BstMBI	GATC	4 cut(s)	25, 108, 215, 234
BstNSI	RCATGY	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	40, 259
BstX2I	RGATCY	2 cut(s)	25, 215
BstYI	RGATCY	2 cut(s)	25, 215
BstZ17I	GTATAC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	7 cut(s)	8, 53, 147, 154, 196, 250, 293
CviKI_1	RGCY	7 cut(s)	8, 53, 147, 154, 196, 250, 293
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	3 cut(s)	219, 288, 312
DpnI	GATC	4 cut(s)	27, 110, 217, 236
DpnII	GATC	4 cut(s)	25, 108, 215, 234
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	127
FaeI	CATG	1 cut(s)	64
FaiI	YATR	3 cut(s)	62, 104, 264
FatI	CATG	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	54, 248
Fsp4HI	GCNGC	2 cut(s)	54, 248
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	2 cut(s)	54, 248
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	1 cut(s)	179
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	44, 264
Hpy188I	TCNGA	5 cut(s)	73, 113, 133, 222, 283
Hpy188III	TCNNGA	1 cut(s)	213
Hpy8I	GTNNAC	2 cut(s)	44, 264
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	117
HpyCH4V	TGCA	5 cut(s)	23, 60, 125, 247, 255
HpyF3I	CTNAG	3 cut(s)	219, 288, 312
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	25, 108, 215, 234
LpnPI	CCDG	4 cut(s)	63, 70, 142, 279
Lsp1109I	GCAGC	2 cut(s)	40, 259
LweI	GCATC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	79, 305
MalI	GATC	4 cut(s)	27, 110, 217, 236
MboI	GATC	4 cut(s)	25, 108, 215, 234
MboII	GAAGA	3 cut(s)	45, 188, 237
MflI	RGATCY	2 cut(s)	25, 215
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	3 cut(s)	199, 228, 241
MluNI	TGGCCA	1 cut(s)	8
MnlI	CCTC	3 cut(s)	31, 67, 283
Mox20I	TGGCCA	1 cut(s)	8
Mph1103I	ATGCAT	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	8
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	53
NdeII	GATC	4 cut(s)	25, 108, 215, 234
NlaIII	CATG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	127
NspI	RCATGY	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	55, 249
PsiI	TTATAA	1 cut(s)	104
PsuI	RGATCY	2 cut(s)	25, 215
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SatI	GCNGC	2 cut(s)	54, 248
Sau3AI	GATC	4 cut(s)	25, 108, 215, 234
SetI	ASST	4 cut(s)	55, 88, 156, 209
SfaNI	GCATC	1 cut(s)	134
Sse9I	AATT	3 cut(s)	199, 228, 241
SspMI	CTAG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	117
TasI	AATT	3 cut(s)	199, 228, 241
TfiI	GAWTC	1 cut(s)	179
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	2 cut(s)	53, 247
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	78
XapI	RAATTY	1 cut(s)	228
XceI	RCATGY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	263
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.