Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005283

Physical Location & Seq

Genomic Coordinates Forward (+)

1610755 .. 1611443

Gene Structure 689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG020200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTTGGCCAATGTTTGTAGTGCAGATCCAAGAAGAGAGGGTTCACTTCCAGCTGCCTGCATGTTTCTCTTGGAGGAAGTAACACCTTCATCTGTTGTGATTATAATGATCGGACTGTCTAATGCATCATCTGATGACATCAAGGGCTACAAGCTCTGGTATTACAAGAGCAGAGAAGAATCACACACAAAAGAGCCTAATTGTACCTTTTCAAGATCTCAGAGAAGAATTTTGATCTCCAATTTGCAGCCTTGCACAGAGTATACATTTAGGATAATGTCTGATACTGAGGCTGGTGATTTGGGTCACTCTGAGGGAAAGTGTTTCACCAAGAGTGTTGAGATAATTCACAAAAACCCGGATTCACCGGTCTGCAGGAATCTCTTTCGAATCCCGTCATTGAGGCAAATTCTGGTGCCACGAGGGAGTCTGAAACTACGACAGCAGTTGTGCCTTCTTCCAAATTTAAAGTTTGTGATCTTGGGAAGATACTTCGTCTGGCTCAGGCTTAACAGAGAGGCTCCTAAGAGGGCTTTTGTAGTGCCAACAGAGAAAAATGTTGTGGTCACCGAAAAAATGACCACATATAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

198

Amino Acids

22.66

Weight (kDa)

9.49

Isoelectric Point (pI)

67.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fn3_VIN3	PF23376	23 - 110	1.1e-28	VIN3-like, fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18870 AT3G24440 AT3G24440
fragaria_vesca	FvH4_1g05280
malus_domestica	MD02G1056200.v1.1 MD15G1189100.v1.1
pyrus_communis	pycom02g04520 pycom02g04530 pycom15g16940 pycom15g16950
rosa_chinensis	RchiOBHm_Chr2g0091001
rosa_laevigata	RLG00000015776 RLG00000016165
rosa_multiflora	Rmu_sc0003305.1_g000004 Rmu_sc0004626.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150700 Rroxscaffold_2G00154300 Rroxscaffold_2G00154540
rosa_rugosa	Rorug01G0468700 Rorug01G0468800 Rorug02G0011400
rosa_samantha	Rh2BG020600 Rh2BG056000 Rh2CG020200 Rh2CG020500 Rh2CG021200 Rh2CG058300 Rh2DG057400
rosa_wichuraiana	Rw2G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	3 cut(s)	228, 408, 463
AfaI	GTAC	1 cut(s)	205
AgeI	ACCGGT	1 cut(s)	367
AgsI	TTSAA	1 cut(s)	213
AluBI	AGCT	2 cut(s)	53, 154
AluI	AGCT	2 cut(s)	53, 154
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	53, 247
ApoI	RAATTY	3 cut(s)	228, 408, 463
AsiGI	ACCGGT	1 cut(s)	367
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	4 cut(s)	308, 319, 357, 559
AsuII	TTCGAA	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	415
BauI	CACGAG	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	40, 259
BcnI	CCSGG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	373
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	2 cut(s)	54, 248
BlsI	GCNGC	2 cut(s)	55, 249
Bme1390I	CCNGG	1 cut(s)	359
BmiI	GGNNCC	2 cut(s)	417, 522
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	134
Bpu10I	CCTNAGC	1 cut(s)	503
Bpu14I	TTCGAA	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	359
BsaWI	WCCGGW	1 cut(s)	367
Bse118I	RCCGGY	1 cut(s)	367
BseMII	CTCAG	4 cut(s)	233, 279, 303, 517
BseXI	GCAGC	2 cut(s)	40, 259
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	415
BshTI	ACCGGT	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	359, 368
BsnI	GGCC	1 cut(s)	8
Bsp119I	TTCGAA	1 cut(s)	388
Bsp143I	GATC	5 cut(s)	25, 108, 215, 234, 477
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	4 cut(s)	232, 280, 304, 516
BspLI	GGNNCC	2 cut(s)	417, 522
BspMAI	CTGCAG	1 cut(s)	377
BspPI	GGATC	1 cut(s)	20
BspT104I	TTCGAA	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	367
BssMI	GATC	5 cut(s)	25, 108, 215, 234, 477
BssNAI	GTATAC	1 cut(s)	264
BssSI	CACGAG	1 cut(s)	420
Bst1107I	GTATAC	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	5 cut(s)	219, 288, 312, 503, 525
BstEII	GGTNACC	1 cut(s)	565
BstKTI	GATC	5 cut(s)	28, 111, 218, 237, 480
BstMBI	GATC	5 cut(s)	25, 108, 215, 234, 477
BstNSI	RCATGY	1 cut(s)	64
BstPI	GGTNACC	1 cut(s)	565
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	40, 259
BstX2I	RGATCY	2 cut(s)	25, 215
BstYI	RGATCY	2 cut(s)	25, 215
BstZ17I	GTATAC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	204
CspAI	ACCGGT	1 cut(s)	367
CviAII	CATG	1 cut(s)	61
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	5 cut(s)	219, 288, 312, 503, 525
DpnI	GATC	5 cut(s)	27, 110, 217, 236, 479
DpnII	GATC	5 cut(s)	25, 108, 215, 234, 477
DraI	TTTAAA	1 cut(s)	468
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco91I	GGTNACC	1 cut(s)	565
EcoO65I	GGTNACC	1 cut(s)	565
EcoT22I	ATGCAT	1 cut(s)	127
FaeI	CATG	1 cut(s)	64
FaiI	YATR	5 cut(s)	62, 104, 264, 586, 588
FatI	CATG	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	54, 248
Fsp4HI	GCNGC	2 cut(s)	54, 248
GluI	GCNGC	2 cut(s)	54, 248
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	2 cut(s)	359, 368
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	5 cut(s)	179, 362, 379, 390, 427
HpaII	CCGG	2 cut(s)	359, 368
HphI	GGTGA	4 cut(s)	308, 319, 357, 559
Hpy166II	GTNNAC	2 cut(s)	44, 264
Hpy188I	TCNGA	6 cut(s)	113, 133, 222, 283, 313, 432
Hpy188III	TCNNGA	1 cut(s)	213
Hpy8I	GTNNAC	2 cut(s)	44, 264
HpyAV	CCTTC	2 cut(s)	96, 464
HpyCH4III	ACNGT	1 cut(s)	117
HpyCH4V	TGCA	6 cut(s)	23, 60, 125, 247, 255, 375
HpyF3I	CTNAG	5 cut(s)	219, 288, 312, 503, 525
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	5 cut(s)	25, 108, 215, 234, 477
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	2 cut(s)	40, 259
LweI	GCATC	1 cut(s)	134
MaeIII	GTNAC	3 cut(s)	79, 305, 565
MalI	GATC	5 cut(s)	27, 110, 217, 236, 479
MboI	GATC	5 cut(s)	25, 108, 215, 234, 477
MboII	GAAGA	5 cut(s)	45, 188, 237, 449, 498
MflI	RGATCY	2 cut(s)	25, 215
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	6 cut(s)	199, 228, 241, 345, 408, 463
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	436
MnlI	CCTC	8 cut(s)	31, 67, 283, 307, 396, 416, 511, 522
Mox20I	TGGCCA	1 cut(s)	8
Mph1103I	ATGCAT	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	2 cut(s)	467, 510
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	359, 368
MspR9I	CCNGG	1 cut(s)	359
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	5 cut(s)	25, 108, 215, 234, 477
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	417, 522
NmuCI	GTSAC	2 cut(s)	305, 565
NsiI	ATGCAT	1 cut(s)	127
NspI	RCATGY	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	388
PfeI	GAWTC	4 cut(s)	179, 362, 379, 390
PinAI	ACCGGT	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	55, 249
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
PsiI	TTATAA	1 cut(s)	104
PspEI	GGTNACC	1 cut(s)	565
PspN4I	GGNNCC	2 cut(s)	417, 522
PstI	CTGCAG	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	25, 215
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	467, 510
SatI	GCNGC	2 cut(s)	54, 248
Sau3AI	GATC	5 cut(s)	25, 108, 215, 234, 477
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	359
SetI	ASST	4 cut(s)	55, 88, 156, 209
SfaNI	GCATC	1 cut(s)	134
SfcI	CTRYAG	1 cut(s)	373
SfuI	TTCGAA	1 cut(s)	388
Sse9I	AATT	6 cut(s)	199, 228, 241, 345, 408, 463
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	388
TasI	AATT	6 cut(s)	199, 228, 241, 345, 408, 463
TfiI	GAWTC	4 cut(s)	179, 362, 379, 390
Tru1I	TTAA	2 cut(s)	467, 510
Tru9I	TTAA	2 cut(s)	467, 510
TseFI	GTSAC	2 cut(s)	305, 565
TseI	GCWGC	2 cut(s)	53, 247
Tsp45I	GTSAC	2 cut(s)	305, 565
TspDTI	ATGAA	1 cut(s)	78
XapI	RAATTY	3 cut(s)	228, 408, 463
XceI	RCATGY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.